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Components Subcellular Localization: Identification of Lipoproteins Using Alkyne Fatty Acids and Click Chemistry

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Bacterial Secretion Systems

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2715))

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Abstract

Lipoproteins contain fatty acids at their amino termini through which they are anchored in lipid membranes. Here, we describe the use of alkyne fatty acids and click chemistry to label lipoproteins in bacterial cells. Exogenous fatty acids containing an alkyne group are incorporated in phospholipids and lipoproteins during bacterial growth. Protein precipitation followed by click chemistry renders lipoproteins fluorescent that can be visualized by in-gel fluorography. Alkyne phospholipids that are the acyl donor in the maturation process of lipoproteins can also be isolated from bacterial membranes for further enzymatic and kinetic studies of acyltransferase that use phospholipids as substrate.

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References

  1. Legood S, Boneca IG, Buddelmeijer N (2021) Mode of action of lipoprotein modification enzymes-Novel antibacterial targets. Mol Microbiol 115:356–365

    Article  CAS  PubMed  Google Scholar 

  2. Thiele C, Papan C, Hölper D et al (2012) Tracing fatty acid metabolism by click-chemistry. ACS Chem Biol 7:2004–2011

    Article  CAS  PubMed  Google Scholar 

  3. Hannoush RN (2012) Profiling cellular myristoylation and palmitoylation using omega-alkynyl fatty acids. Methods Mol Biol 800:85–94

    Article  CAS  PubMed  Google Scholar 

  4. Rangan KJ, Yang YY, Charron G, Hang HC (2010) Rapid visualization and large-scale profiling of bacterial lipoproteins with chemical reporters. J Am Chem Soc 132:10628–10629

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Nozeret K, Boucharlat A, Agou F, Buddelmeijer N (2019) A sensitive fluorescence-based assay to monitor enzymatic activity of the essential integral membrane protein apolipoprotein N-acyltransferase (Lnt). Sci Rep 9:15978

    Article  PubMed  PubMed Central  Google Scholar 

  6. Skipski VP, Peterson RF, Barclay M (1964) Quantitative analysis of phospholipids by thin-layer chromatography. Biochem J 159:e61146

    Google Scholar 

  7. Nozeret K, Pernin A, Buddelmeijer N (2020) Click-chemistry based Fluorometric assay for apolipoprotein N-acyltransferase from enzyme characterization to high-throughput screening. J Vis Exp. https://doi.org/10.3791/61146

  8. Schagger H (2006) Tricine-SDS-PAGE. Nat Protoc 1:16–22

    Article  PubMed  Google Scholar 

  9. Holzl G, Dormann P (2021) Thin-layer chromatography. Methods Mol Biol 2295:29–41

    Article  PubMed  Google Scholar 

  10. Hannoush RN, Sun J (2010) The chemical toolbox for monitoring protein fatty acylation and prenylation. Nat Chem Biol 6:498–506

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Nienke Buddelmeijer .

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© 2024 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Nozeret, K., Buddelmeijer, N. (2024). Components Subcellular Localization: Identification of Lipoproteins Using Alkyne Fatty Acids and Click Chemistry. In: Journet, L., Cascales, E. (eds) Bacterial Secretion Systems . Methods in Molecular Biology, vol 2715. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3445-5_5

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  • DOI: https://doi.org/10.1007/978-1-0716-3445-5_5

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3444-8

  • Online ISBN: 978-1-0716-3445-5

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