Abstract
The class Gammaproteobacteria contains the most important genera and largest diversity of obligate and generalist hydrocarbonoclastic bacteria that are found in the marine environment. With the exception of Planomicrobium alkanoclasticum (a Gram-positive of the Firmicutes), all obligate hydrocarbonoclastic bacteria (OHCB), represented by the genera Alcanivorax, Cycloclasticus, Neptunomonas, Oleibacter, Oleiphilus, Oleispira, and Thalassolituus, are represented within the Gammaproteobacteria. Notably, the OHCB appear to be confined to marine environments where they were initially discovered – alluding to an evolutionary genesis in the ocean – and where they are commonly found to become strongly enriched at oil contaminated sites. Prospecting studies aimed in identifying new taxa of hydrocarbonoclastic bacteria from underexplored biotopes in the ocean have uncovered novel strains of OHCB and generalist hydrocarbon degraders within the Gammaproteobacteria, which has increased the known diversity of hydrocarbonoclastic bacteria that constitute this physiologically and phylogenetically diverse class.
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References
Bælum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman H-Y, Hazen TC, Jansson JK (2012) Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol 14:2405–2416
Chronopoulou P-M, Sanni GO, Silas-Olu DI, van der Meer JR, Timmis KN, Brussaard CPD, McGenity TJ (2015) Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea. Microb Biotechnol 8:434–447
Coulon F, Chronoupolou P-M, Fahy A, Païssé S, Goñi-Urriza MS, Peperzak L, Acuña-Alvarez L, McKew BA, Brussard C, Underwood GJC, Timmis KN, Duran R, McGenity TJ (2012) Central role of dynamic tidal biofilms dominated by aerobic hydrocarbonoclastic bacteria and diatoms in the biodegradation of hydrocarbons in coastal mudflats. Appl Environ Microbiol 78:3638–3648
Dalvi S, Nicholson C, Najar F, Roe BA, Canaan P, Hartson SD, Fathepure BZ (2014) Arhodomonas sp. strain Seminole and its genetic potential to degrade aromatic compounds under high-salinity conditions. Appl Environ Microbiol 80:6664–6676
Dubinsky EA, Conrad ME, Chakraborty R, Bill M, Borglin SE, Hollibaugh JT, Mason OU, Piceno YM, Reid FC, Stringfellow WT, Tom LM, Hazen TC, Andersen GL (2013) Succession of hydrocarbon-degrading bacteria in the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico. Environ Sci Technol 47:10860–10867
Duran R (2010) Marinobacter. In: Timmis KN, de Lorenzo V, van der Meer J-R, McGenity TJ (eds) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, pp 1725–1735
Edlund A, Jansson JK (2008) Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phananthrene-enriched polluted Baltic Sea sediments. FEMS Microbiol Ecol 65:513–525
Garrity GM, Lilburn TG, Cole JR, Harrison SH, Euzéby J, Tindall BJ (2007) Part 5 – The Bacteria: Phylum “Proteobacteria”, Class Gammaproteobacteria. Taxonomic outline of the Bacteria and Archaea; Release 7.7. http://taxonomicoutline.org/content/7/7/
Gutierrez T, Singleton DR, Berry D, Yang T, Aitken MD, Teske A (2013) Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP. ISME J 7:2091–2104
Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney J, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D’haeseleer P, Holman H-YN, Osman S, Lu Z, van Nostrand JD, Deng Y, Zhou J, Mason OU (2010) Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 330:204–208
Head IM, Jones DM, Röling WF (2006) Marine microorganisms make a meal of oil. Nat Rev Microbiol 4:173–182
Janvier M, Grimont PAD (1995) The genus Methylophaga, a new line of descent within phylogenetic branch γ of Proteobacteria. Res Microbiol 146:543–550
Lai Q, Wang L, Liu Y, Fu Y, Zhong H, Wang B, Chen L, Wang J, Sun F, Shao Z (2011) Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium. Int J Syst Evol Microbiol 61:1370–1374
Lanfranconi MP, Bosch R, Nogales B (2010) Short-term changes in the composition of active marine bacterial assemblages in response to diesel oil pollution. Microb Biotechnol 3:607–621
Luo YR, Tian Y, Huang X, Yan CL, Hong HS, Lin GH, Zheng TL (2009) Analysis of community structure of a microbial consortium capable of degrading benzo[a]pyrene by DGGE. Mar Pollut Bull 58:1159–1163
Mason OU, Hazen TC, Borglin S, Chain PSG, Dubinsky EA, Fortney JL, Han J, Holman H-YN, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK (2012) Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J 6:1715–1727
Melcher RJ, Apitz SE, Hemmingsen BB (2002) Impact of irradiation and polycyclic aromatic hydrocarbon spiking on microbial populations in marine sediment for future aging and biodegradability studies. Appl Environ Microbiol 68:2858–2868
Mishamandani S, Gutierrez T, Aitken MD (2014) DNA-based stable isotope probing coupled with cultivation methods implicates Methylophaga in hydrocarbon degradation. Front Microbiol 5:76
Redmond MC, Valentine DL (2012) Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill. Proc Natl Acad Sci U S A 109:20292–20297
Rojo F (2009) Degradation of alkanes by bacteria. Environ Microbiol 11:2477–2490
Rubin-Blum M, Antony CP, Borowski C, Sayavedra L, Pape T, Sahling H, Bohrmann G, Kleiner M, Redmond MC, Valentine DL, Dubilier N (2017) Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. Nat Microbiol 2:17093
Schneiker S, Martins dos Santos VAP, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachan AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Pühler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorhölter FJ, Weidner S, Kaiser O, Golyshin PN (2006) Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nat Biotechnol 24:997–1004
Timmis KN, de Lorenzo V, van der Meer J-R, McGenity TJ (eds) (2010) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin
Valentine DL, Kessler JD, Redmond MC, Mendes SD, Heintz MB, Farwell C, Hu L, Kinnaman FS, Yvon-Lewis S, Du M, Chan EW, Tigreros FG, Villanueva CJ (2010) Propane respiration jump-starts microbial response to a deep oil spill. Science 330:208–211
van Beilen JB, Funhoff EG (2007) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74:13–21
Wang W, Shao Z (2012) Diversity of flavin-binding monooxygenase genes (almA) in marine bacteria capable of degradation long-chain alkanes. FEMS Microbiol Ecol 80:523–533
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261–5267
Yakimov MM, Giuliano L, Gentile G, Crisafi E, Chernikova TN, Abraham W-R, Lünsdorf H, Timmis KN, Golyshin PN (2003) Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water. Int J Syst Evol Microbiol 53:779–785
Yakimov MM, Giuliano L, Denaro R, Crisafi E, Chernikova TN, Abraham W-R, Luensdorf H, Timmis KN, Golyshin PN (2004) Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. Int J Syst Evol Microbiol 54:141–148
Yakimov MM, Timmis KN, Golyshin PN (2007) Obligate oil-degrading marine bacteria. Curr Opin Biotechnol 18:257–266
Yang T, Nigro LM, Gutierrez T, D’Ambrosio L, Joye SB, Highsmith R, Teske A (2016) Pulsed blooms and persistent oil-degrading bacterial populations in the water column during and after the Deepwater Horizon blowout. Deep-Sea Res II Top Stud Oceanogr 129:282–291
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Gutierrez, T. (2019). Marine, Aerobic Hydrocarbon-Degrading Gammaproteobacteria: Overview. In: McGenity, T. (eds) Taxonomy, Genomics and Ecophysiology of Hydrocarbon-Degrading Microbes. Handbook of Hydrocarbon and Lipid Microbiology . Springer, Cham. https://doi.org/10.1007/978-3-030-14796-9_22
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DOI: https://doi.org/10.1007/978-3-030-14796-9_22
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