Skip to main content

Abstract:

Many Marinobacter species are efficient degraders of aliphatic and polycyclic aromatic hydrocarbons as well as acyclic isoprenoid compounds. They are frequently isolated as hydrocarbon-degrading organisms in a wide variety of contaminated marine environments suggesting that they play a key role in mitigation of oil pollution. Studies of their physiology, biochemistry and genomics have enhanced our understanding of the ecophysiological role of Marinobacter spp. in marine contaminated ecosystems and highlighted their biotechnological potential.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 1,499.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 549.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Abed RMM, Zein B, Al-Thukair A, de Beer D (2007) Phylogenetic diversity and activity of aerobic heterotrophic bacteria from a hypersaline oil-polluted microbial mat. Syst Appl Microbiol 30: 319–330.

    Article  PubMed  CAS  Google Scholar 

  • Amin S, Küpper FC, Green DH, Harris WR, Carrano CJ (2007) Boron binding by a siderophore isolated from marine bacteria associated with the toxic dinoflagellate Gymnodinium catenatum. J Am Chem Soc 129: 478–479.

    Article  PubMed  CAS  Google Scholar 

  • Antunes A, França L, Rainey FA, Huber R, Nobre MF, Edwards KJ, da Costal MS (2007) Marinobacter salsuginis sp. nov., isolated from the brine–seawater interface of the Shaban Deep, Red Sea. Int J Syst Evol Microbiol 57: 1035–1040.

    Article  PubMed  CAS  Google Scholar 

  • Barbeau K, Zhang G, Live DH, Butler A (2002) Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus. J Am Chem Soc 124: 378–379.

    Article  PubMed  CAS  Google Scholar 

  • Baumann P, Baumann L (1981) The gram negative eubacteria genus Protobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes. In The prokaryotes: a handbook on habitats, isolation and identification of bacteria. PS Mortimer, et al. (eds.). Berlin: Springer, pp. 1302–1330.

    Google Scholar 

  • Bonin P, Bertrand JC (1999) Involvement of bioemulsifier in heptadecane uptake in Pseudomonas nautical. Chemosphere 38: 1157–1164.

    Article  Google Scholar 

  • Bordenave S, Goñi-Urriza MS, Caumette P, Duran R (2007) Effects of Heavy Fuel Oil on the Bacterial Community Structure of a Pristine Microbial Mat. Appl Environ Microbiol 73: 6089–6097.

    Article  PubMed  CAS  Google Scholar 

  • Bowman JP, McCammon SA, Brown MV, Nichols DS, McMeekin TA (1997) Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63: 3068–3078.

    PubMed  CAS  Google Scholar 

  • Bowman, McMeekin (2005) Marinobacter. In Bergey’s Manual of Systematic Bacteriology, Vol. 2, DJ Brenner, NR Krieg, and JT Staley (eds.). New York: Springer, pp. 459–463.Part B.

    Google Scholar 

  • Brito EMS, Guyoneaud R, Goñi-Urriza MS, Ranchou-Peyruse A, Verbaere A, Crapez MAC, Wasserman JCA, Duran R (2006) Characterization of hydrocarbonoclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil. Res Microbiol 157: 752–762.

    Article  PubMed  CAS  Google Scholar 

  • Cui ZS, Lai QL, Dong CM, Shao ZZ (2008) Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge. Environ Microbiol 10: 2138–2149.

    Article  PubMed  CAS  Google Scholar 

  • Deppe U, Richnow HH, Michaelis W, Antranikian G (2005) Degradation of crude oil by an arctic microbial consortium. Extremophiles 9: 461–470.

    Article  PubMed  Google Scholar 

  • Doumenq P, Aries E, Asia L, Acquaviva M, Artaud J, Gilewicz M, Mille G, Bertrand JC (2001) Influence of n-alkanes and petroleum on fatty acid composition of a hydrocarbon-degrading bacterium: Marinobacter hydrocarbonoclasticus strain 617. Chemosphere 44: 519–528.

    Article  PubMed  CAS  Google Scholar 

  • Edwards KJ, Rogers DR, McCollom TM, Wirsen CO (2003) Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and (-Proteobacteria from the deep sea. Appl Environ Microbiol 69: 2906–2913.

    Article  PubMed  CAS  Google Scholar 

  • Gauthier MJ, Lafay B, Christen R, Fernandez L, Acquaviva M, Bonin P, Bertrand JC (1992) Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new extremely halotolerant, hydrocarbondegrading marine bacterium. Int J Syst Bacteriol 42: 568–576.

    Article  PubMed  CAS  Google Scholar 

  • Gorshkova NM, Ivanova EP, Sergeev AF, Zhukova NV, Alexeeva Y, Wright JP, Nicolau DV, Mikhailov VV, Christen R (2003) Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan. Int J Syst Evol Microbiol 53: 2073–2078.

    Article  PubMed  CAS  Google Scholar 

  • Green DH, Bowman JP, Smith EA, Gutierrez T, Bolch CJS (2006) Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin producing dinoflagellates. Int J Syst Evol Microbiol 56: 523–527.

    Article  PubMed  CAS  Google Scholar 

  • Gu J, Cai H, Yu SL, Qu R, Yin B, Guo YF, Zhao JY, Wu XL (2007) Marinobacter gudaonensis sp. nov., isolated from an oil-polluted saline soil in a Chinese oilfield. Int J Syst Evol Microbiol 57: 250–254.

    Article  PubMed  CAS  Google Scholar 

  • Guo B, Gu J, Ye YG, Tang YQ, Kida K, Wu XL (2007) Marinobacter segnicrescens sp. nov., a moderate halophile isolated from benthic sediment of the South China Sea. Int J Syst Evol Microbiol 57: 1970–1974.

    Article  PubMed  CAS  Google Scholar 

  • Hedlund BP, Geiselbrecht AD, Staley JT (2001) Marinobacter strain NCE312 has a Pseudomonas-like naphthalene dioxygenase. FEMS Microbiol Lett 201: 47–51.

    Article  PubMed  CAS  Google Scholar 

  • Holtzapple E, Schmidt-Dannert C (2007) Biosynthesis of isoprenoid wax ester in Marinobacter hydrocarbonoclasticus DSM 8798: identification and characterization of isoprenoid coenzyme A synthetase and wax ester synthases. J Bacteriol 189: 3804–3812.

    Article  PubMed  CAS  Google Scholar 

  • Kim BY, Weon HY, Yoo SH, Kim JS, Kwon SW, Stackebrandt E, Go SJ (2006) Marinobacter koreensis sp. nov., isolated from sea sand in Korea. Int J Syst Evol Microbiol 56: 2653–2656.

    Article  PubMed  CAS  Google Scholar 

  • Klein B, Grossi V, Bouriat P, Goulas P, Grimaud R (2008) Cytoplasmic wax ester accumulation during biofilm-driven substrate assimilation at the alkane-water interface by Marinobacter hydrocarbonoclasticus SP17. Res Microbiol 159: 137–144.

    Article  PubMed  CAS  Google Scholar 

  • Kodama M, Doucette GJ, Green DH (2006) Relationships between bacteria and harmful algae. In Ecology of Harmful Algae. Ecological Studies: Analysis and Synthesis, vol. 189. E Granéli and JT Turner (eds.). Berlin: Springer, pp. 243–255.

    Chapter  Google Scholar 

  • Lopez MA, Zavala Diaz de la Serna FJ, Roblero JJ, Romero JM, Hernandez-Rodriguez C (2006) Phylogenetic analysis of a biofilm bacterial population in a water pipeline in the Gulf of Mexico. FEMS Microbiol Ecol 58: 145–154.

    Article  PubMed  CAS  Google Scholar 

  • Marquez MC, Ventosa A (2005) Marinobacter hydrocarbonoclasticus Gauthier et al., 1992 and Marinobacter aquaeolei Nguyen et al., 1999 are heterotypic synonyms. Int J Syst Evol Microbiol 55: 1349–1351.

    Article  PubMed  CAS  Google Scholar 

  • Martin S, Marquez MC, Sanchez-Porro C, Mellado E, Arahal DR, Ventosa A (2003) Marinobacter lipolyticus sp. nov., a novel moderate halophile with lipolytic activity. Int J Syst Evol Microbiol 53: 1383–1387.

    Article  PubMed  CAS  Google Scholar 

  • Martinez JS, Butler A (2007) Marine amphiphilic siderophores: Marinobactin structure, uptake, and microbial partitioning. J Inorg Biochem 101: 1692–1698.

    Article  PubMed  CAS  Google Scholar 

  • Martinez JS, Zhang GP, Holt PD, Jung HT, Carrano CJ, Haygood MG, Butler A (2000) Self-assembling amphiphilic siderophores from marine bacteria. Science 287: 1245–1247.

    Article  PubMed  CAS  Google Scholar 

  • McGowan L, Herbert R, Muyzer G (2004) A comparative study of hydrocarbon degradation by Marinobacter sp., Rhodococcus sp. and Corynebacterium sp. isolated from different mat systems. Ophelia 58: 271–281.

    Google Scholar 

  • Mikucki JA, Priscu JC (2007) Bacterial Diversity Associated with Blood Falls, a Subglacial outflow from the Taylor Glacier, Antarctica. Appl Environ Microbiol 73: 4029–4039.

    Article  PubMed  CAS  Google Scholar 

  • Montes MJ, Bozal N, Mercadé E (2008) Marinobacter guineae sp. nov., a novel moderately halophilic bacterium from an Antarctic environment. Int J Syst Evol Microbiol 58: 1346–1349.

    Article  PubMed  CAS  Google Scholar 

  • Nguyen BH, Denner EBM, Dang TCH, Wanner G, Stan-Lotter H (1999) Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Int J Syst Bacteriol 49: 367–375.

    Article  Google Scholar 

  • Romanenko LA, Schumann P, Rohde M, Zhukova NV, Mikhailov VV, Stackebrandt E (2005) Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. Int J Syst Evol Microbiol 55: 143–148.

    Article  PubMed  CAS  Google Scholar 

  • Rontani JF, Bonin P, Volkman JK (1999) Production of wax esters during aerobic growth of marine bacteria on isoprenoid compounds. Appl Environ Microbiol 65: 221–230.

    PubMed  CAS  Google Scholar 

  • Rontani JF, Gilewicz M, Michotey V, Zheng TL, Bonin PC, Bertrand JC (1997) Aerobic and anaerobic metabolism of 6,10,14-trimethylpentadecan-2-one by a denitrifying bacterium isolated from marine sediments. Appl Environ Microbiol 63: 636–643.

    PubMed  CAS  Google Scholar 

  • Rontani JF, Mouzdahir A, Michotey V, Caumette P, Bonin P (2003) Production of a polyunsaturated isoprenoid wax ester during aerobic metabolism of squalene by Marinobacter squalenivorans sp. nov. Appl Environ Microbiol 69: 4167–4176.

    Article  PubMed  CAS  Google Scholar 

  • Shieh WY, Jean WD, Lin YT, Tseng M (2003) Marinobacter lutaoensis sp. nov., a thermotolerant marine bacterium isolated from a coastal hot spring in Lutao, Taiwan. Can. J Microbiol 49: 244–252.

    Article  PubMed  CAS  Google Scholar 

  • Shivaji S, Gupta P, Chaturvedi P, Suresh K, Delille D (2005) Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 55: 1453–1456.

    Article  PubMed  CAS  Google Scholar 

  • Sigalevich P, Baev MV, Teske A, Cohen Y (2000) Sulfate reduction and possible aerobic metabolism of the sulfate-reducing bacterium Desulfovibrio oxyclinae in a chemostat coculture with Marinobacter sp. strain MB under exposure to increasing oxygen concentrations. Appl Environ Microbiol 66: 5013–5018.

    Article  PubMed  CAS  Google Scholar 

  • Sigelvich P, Cohen Y (2000) Oxygen-dependent growth of the sulfate-reducing bacterium Desulfovibrio oxyclinae in coculture with Marinobacter sp. strain MB in an aerated sulfate-depleted chemostat. Appl Environ Microbiol 66: 5019–5023.

    Article  Google Scholar 

  • Sorensen SR, Arbeli Z, Aamand J, Ronen Z (2002) Metabolism of diphenylurea by a Marinobacter sp. isolated from a contaminated ephemeral stream bed in the Negev Desert. FEMS Microbiol Lett 213: 199–204.

    Article  PubMed  CAS  Google Scholar 

  • Spröer C, Lang E, Hobeck P, Burghardt J, Stackebrandt E, Tindall BJ (1998) Transfer of Pseudomonas nautica to Marinobacter hydrocarbonoclasticus. Int J Syst Bacteriol 48: 1445–1448.

    Article  Google Scholar 

  • Takai K, Moyer CL, Miyazaki M, Nogi Y, Hirayama H, Nealson KH, Horikoshi K (2005) Marinobacter alkaliphilus sp. nov., a novel alkaliphilic bacterium isolated from subseafloor alkaline serpentine mud from Ocean Drilling Program Site 1200 at South Chamorro Seamount, Mariana Forearc. Extremophiles 9: 17–27.

    Article  PubMed  CAS  Google Scholar 

  • Ward B, Priscu JC (1997) Detection and characterization of denitrifying bacteria from a permanently ice-covered Antarctic Lake. Hydrobiologia 347: 57–68.

    Article  CAS  Google Scholar 

  • Yakimov MM, Giuliano L, Crisafi E, Chernikova TN, Timmis KN, Golyshin PN (2002) Microbial community of a saline mud volano at San Biagio-Belpasso, Mt. Etna (Italy). Environ Microbiol 4: 249–256.

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Shin DY, Kim IG, Kang KH, Park YH (2003) Marinobacter litoralis sp. nov., a moderately halophilic bacterium isolated from sea water from the East Sea in Korea. Int J Syst Evol Microbiol 53: 563–568.

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Yeo SH, Kim IG, Oh TK (2004) Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54: 1799–1803.

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

Thanks are due to the Genoscope and all researchers involved in the Marinobacter hydrocarbonoclasticus whole-genome sequencing (MarinoScope, coordinator V. Michotey).

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer-Verlag Berlin Heidelberg

About this entry

Cite this entry

Duran, R. (2010). Marinobacter. In: Timmis, K.N. (eds) Handbook of Hydrocarbon and Lipid Microbiology. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-77587-4_122

Download citation

Publish with us

Policies and ethics