Volume 291, Issue 2

Search all Molecular Genetics and Genomics articles

April 2016

37 articles in this issue

Unrevealed mosaicism in the next-generation sequencing era
Marzena Gajecka
Review Open access 19 October 2015 Pages: 513 - 530
GDSL esterase/lipase genes in Brassica rapa L.: genome-wide identification and expression analysis
Xiangshu Dong
Hankuil Yi
Yoonkang Hur
Original Article 30 September 2015 Pages: 531 - 542
Genome-wide analysis of the IQD gene family in maize
Ronghao Cai
Congsheng Zhang
Beijiu Cheng
Original Article 09 October 2015 Pages: 543 - 558
Comparison of skeletal muscle miRNA and mRNA profiles among three pig breeds
Xinhua Hou
Yalan Yang
Kui Li
Original Article 12 October 2015 Pages: 559 - 573
De novo transcriptome sequencing of Acer palmatum and comprehensive analysis of differentially expressed genes under salt stress in two contrasting genotypes
Liping Rong
Qianzhong Li
Jing Wen
Original Article 16 October 2015 Pages: 575 - 586
Identification of microRNA-like RNAs from Curvularia lunata associated with maize leaf spot by bioinformation analysis and deep sequencing
Tong Liu
John Hu
Jumei Hou
Original Article 19 October 2015 Pages: 587 - 596
Genome-wide identification and expression analysis of the expansin gene family in tomato
Yongen Lu
Lifeng Liu
Hanxia Li
Original Article 24 October 2015 Pages: 597 - 608
Isolation and characterization of cDNAs and genomic DNAs encoding ADP-glucose pyrophosphorylase large and small subunits from sweet potato
Yu-Xi Zhou
Yu-Xiang Chen
Hai-Yan Wang
Original Article 24 October 2015 Pages: 609 - 620
Genome-wide identification and comparative analysis of grafting-responsive mRNA in watermelon grafted onto bottle gourd and squash rootstocks by high-throughput sequencing
Na Liu
Jinghua Yang
Mingfang Zhang
Original Article 26 October 2015 Pages: 621 - 633
Genome-wide identification and characterization of the apple (Malus domestica) HECT ubiquitin-protein ligase family and expression analysis of their responsiveness to abiotic stresses
Jianing Xu
Shanshan Xing
Xiaoyun Wang
Original Article 28 October 2015 Pages: 635 - 646
De novo assembly and characterization of the Welsh onion (Allium fistulosum L.) transcriptome using Illumina technology
Xiu-Dong Sun
Xin-Hui Yu
Shi-Qi Liu
Original Article 29 October 2015 Pages: 647 - 659
Calcium-dependent protein kinase (CDPK) and CDPK-related kinase (CRK) gene families in tomato: genome-wide identification and functional analyses in disease resistance
Ji-Peng Wang
You-Ping Xu
Xin-Zhong Cai
Original Article 31 October 2015 Pages: 661 - 676
The ABC transporter ABCG29 is involved in H₂O₂ tolerance and biocontrol traits in the fungus Clonostachys rosea
Mukesh Dubey
Dan Funck Jensen
Magnus Karlsson
Original Article 31 October 2015 Pages: 677 - 686
RNA-seq transcriptome analysis of extensor digitorum longus and soleus muscles in large white pigs
Jiayu Zhu
Xin’e Shi
Gongshe Yang
Original Article 31 October 2015 Pages: 687 - 701
Genomic survey and expression analysis of DNA repair genes in the genus Leptospira
Marinalva Martins-Pinheiro
Luciane Schons-Fonseca
Renata M. A. da Costa
Original Article 02 November 2015 Pages: 703 - 722
Correlated expression of retrocopies and parental genes in zebrafish
Zaixuan Zhong
Liandong Yang
Shunping He
Original Article 11 November 2015 Pages: 723 - 737
Evolution of the KCS gene family in plants: the history of gene duplication, sub/neofunctionalization and redundancy
Hai-Song Guo
Yan-Mei Zhang
Jia-Yu Xue
Original Article 12 November 2015 Pages: 739 - 752
Large-scale developing of simple sequence repeat markers and probing its correlation with ramie (Boehmeria nivea L.) fiber quality
Jie Chen
Runqing Yu
Dingxiang Peng
Original Article 14 November 2015 Pages: 753 - 761
Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues
Martin Lewinski
Armin Hallmann
Dorothee Staiger
Original Article 20 November 2015 Pages: 763 - 773
Molecular cytogenetic analysis and genomic organization of major DNA repeats in castor bean (Ricinus communis L.)
O. S. Alexandrov
G. I. Karlov
Original Article 20 November 2015 Pages: 775 - 787
Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis
Min Yao
Weihua Gao
Tinghua Huang
Original Article 20 November 2015 Pages: 789 - 799
The origin of exon 3 skipping of paternal GLOBOSA pre-mRNA in some Nicotiana tabacum lines correlates with a point mutation of the very last nucleotide of the exon
Jaroslav Fulneček
Roman Matyášek
Original Article 25 November 2015 Pages: 801 - 818
Expression of genes involved in the salicylic acid pathway in type h1 thioredoxin transiently silenced pepper plants during a begomovirus compatible interaction
Marianne S. Luna-Rivero
Cecilia Hernández-Zepeda
Oscar A. Moreno-Valenzuela
Original Article 25 November 2015 Pages: 819 - 830
Whole-transcriptome analysis of mouse adipose tissue in response to short-term caloric restriction
Seung-Soo Kim
Kyung-Mi Choi
Cheol-Koo Lee
Original Article 25 November 2015 Pages: 831 - 847
De novo assembly and characterization of the leaf, bud, and fruit transcriptome from the vulnerable tree Juglans mandshurica for the development of 20 new microsatellite markers using Illumina sequencing
Zhuang Hu
Tian Zhang
Peng Zhao
Original Article 27 November 2015 Pages: 849 - 862
Novel mutations in EVC cause aberrant splicing in Ellis–van Creveld syndrome
Lisong Shi
Chunyan Luo
Xiaoqian Ye
Original Article 30 November 2015 Pages: 863 - 872
Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat
Arnaud Cheuk
Mario Houde
Original Article 06 December 2015 Pages: 873 - 890
Genetic variations in the PSMA3, PSMA6 and PSMC6 genes are associated with type 1 diabetes in Latvians and with expression level of number of UPS-related and T1DM-susceptible genes in HapMap individuals
Tatjana Sjakste
Natalia Paramonova
Nikolajs Sjakste
Original Article 12 December 2015 Pages: 891 - 903
Analysis of pan-genome to identify the core genes and essential genes of Brucella spp.
Xiaowen Yang
Yajie Li
Qingmin Wu
Original Article 02 January 2016 Pages: 905 - 912
Identifying novel protein phenotype annotations by hybridizing protein–protein interactions and protein sequence similarities
Lei Chen
Yu-Hang Zhang
Yu-Dong Cai
Original Article 04 January 2016 Pages: 913 - 934
Non-functional plastid ndh gene fragments are present in the nuclear genome of Norway spruce (Picea abies L. Karsch): insights from in silico analysis of nuclear and organellar genomes
Sonali Sachin Ranade
María Rosario García-Gil
Josep A. Rosselló
Original Article 05 January 2016 Pages: 935 - 941
MicroRNA profiling of antler stem cells in potentiated and dormant states and their potential roles in antler regeneration
Hengxing Ba
Datao Wang
Chunyi Li
Original Article 06 January 2016 Pages: 943 - 955
Strigolactone pathway genes and plant architecture: association analysis and QTL detection for horticultural traits in chrysanthemum
Maik Klie
Ina Menz
Thomas Debener
Original Article 19 January 2016 Pages: 957 - 969
Identification, duplication, evolution and expression analyses of caleosins in Brassica plants and Arabidopsis subspecies
Yue Shen
Mingzhe Liu
Meng Zhang
Original Article 19 January 2016 Pages: 971 - 988
Allelic variants of the esterase gene W14/15 differentially regulate overwinter survival in perennial gentian (Gentiana L.)
Takashi Hikage
Noriko Yamagishi
Ken-ichi Tsutsumi
Original Article 23 December 2015 Pages: 989 - 997
Selection of reference genes for analysis of stress-responsive genes after challenge with viruses and temperature changes in the silkworm Bombyx mori
Huizhen Guo
Liang Jiang
Qingyou Xia
Methods Paper 05 October 2015 Pages: 999 - 1004
Identification of cell types, tissues and pathways affected by risk loci in psoriasis
Yan Lin
Pan Zhao
Xianyong Yin
Methods Paper 12 November 2015 Pages: 1005 - 1012

Volume 291, Issue 2

Unrevealed mosaicism in the next-generation sequencing era

GDSL esterase/lipase genes in Brassica rapa L.: genome-wide identification and expression analysis

Genome-wide analysis of the IQD gene family in maize

Comparison of skeletal muscle miRNA and mRNA profiles among three pig breeds

De novo transcriptome sequencing of Acer palmatum and comprehensive analysis of differentially expressed genes under salt stress in two contrasting genotypes

Identification of microRNA-like RNAs from Curvularia lunata associated with maize leaf spot by bioinformation analysis and deep sequencing

Genome-wide identification and expression analysis of the expansin gene family in tomato

Isolation and characterization of cDNAs and genomic DNAs encoding ADP-glucose pyrophosphorylase large and small subunits from sweet potato

Genome-wide identification and comparative analysis of grafting-responsive mRNA in watermelon grafted onto bottle gourd and squash rootstocks by high-throughput sequencing

Genome-wide identification and characterization of the apple (Malus domestica) HECT ubiquitin-protein ligase family and expression analysis of their responsiveness to abiotic stresses

De novo assembly and characterization of the Welsh onion (Allium fistulosum L.) transcriptome using Illumina technology

Calcium-dependent protein kinase (CDPK) and CDPK-related kinase (CRK) gene families in tomato: genome-wide identification and functional analyses in disease resistance

The ABC transporter ABCG29 is involved in H₂O₂ tolerance and biocontrol traits in the fungus Clonostachys rosea

RNA-seq transcriptome analysis of extensor digitorum longus and soleus muscles in large white pigs

Genomic survey and expression analysis of DNA repair genes in the genus Leptospira

Correlated expression of retrocopies and parental genes in zebrafish

Evolution of the KCS gene family in plants: the history of gene duplication, sub/neofunctionalization and redundancy

Large-scale developing of simple sequence repeat markers and probing its correlation with ramie (Boehmeria nivea L.) fiber quality

Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues

Molecular cytogenetic analysis and genomic organization of major DNA repeats in castor bean (Ricinus communis L.)

Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis

The origin of exon 3 skipping of paternal GLOBOSA pre-mRNA in some Nicotiana tabacum lines correlates with a point mutation of the very last nucleotide of the exon

Expression of genes involved in the salicylic acid pathway in type h1 thioredoxin transiently silenced pepper plants during a begomovirus compatible interaction

Whole-transcriptome analysis of mouse adipose tissue in response to short-term caloric restriction

De novo assembly and characterization of the leaf, bud, and fruit transcriptome from the vulnerable tree Juglans mandshurica for the development of 20 new microsatellite markers using Illumina sequencing

Novel mutations in EVC cause aberrant splicing in Ellis–van Creveld syndrome

Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat

Genetic variations in the PSMA3, PSMA6 and PSMC6 genes are associated with type 1 diabetes in Latvians and with expression level of number of UPS-related and T1DM-susceptible genes in HapMap individuals

Analysis of pan-genome to identify the core genes and essential genes of Brucella spp.

Identifying novel protein phenotype annotations by hybridizing protein–protein interactions and protein sequence similarities

Non-functional plastid ndh gene fragments are present in the nuclear genome of Norway spruce (Picea abies L. Karsch): insights from in silico analysis of nuclear and organellar genomes

MicroRNA profiling of antler stem cells in potentiated and dormant states and their potential roles in antler regeneration

Strigolactone pathway genes and plant architecture: association analysis and QTL detection for horticultural traits in chrysanthemum

Identification, duplication, evolution and expression analyses of caleosins in Brassica plants and Arabidopsis subspecies

Allelic variants of the esterase gene W14/15 differentially regulate overwinter survival in perennial gentian (Gentiana L.)

Selection of reference genes for analysis of stress-responsive genes after challenge with viruses and temperature changes in the silkworm Bombyx mori

Identification of cell types, tissues and pathways affected by risk loci in psoriasis

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