Identifying patient-specific flow of signal transduction perturbed by multiple single-nucleotide alterations Olha KholodChi-Ren ShyuDmitriy Shin Research Article 22 December 2020 Pages: 336 - 346
Performance-weighted-voting model: an ensemble machine learning method for cancer type classification using whole-exome sequencing mutation Yawei LiYuan Luo Research Article 08 December 2020 Pages: 347 - 358
Prediction and analysis of human-herpes simplex virus type 1 protein-protein interactions by integrating multiple methods Xianyi LianXiaodi YangZiding Zhang Research Article 08 December 2020 Pages: 312 - 324
Recent advances and application in whole-genome multiple displacement amplification Naiyun LongYi QiaoZuhong Lu Review 08 December 2020 Pages: 279 - 294
Multi-chain Fudan-CCDC model for COVID-19—a revisit to Singapore’s case Hanshuang PanNian ShaoWenbin Chen Research 23 November 2020 Pages: 325 - 335
Toward an understanding of the relation between gene regulation and 3D genome organization Hao TianYing YangYi Qin Gao Research Article 23 November 2020 Pages: 295 - 311
RECOGNICER: A coarse-graining approach for identifying broad domains from ChIP-seq data Chongzhi ZangYiren WangWeiqun Peng Method 20 November 2020 Pages: 359 - 368
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data Jianyu ZhouPan LiTao Jiang Method 31 October 2020 Pages: 369 - 381
CELLO: a longitudinal data analysis toolbox untangling cancer evolution Biaobin JiangDong SongJiguang Wang Protocol and Tutorial 27 September 2020 Pages: 256 - 266
Erratum to: Identifying miRNA-disease association based on integrating miRNA topological similarity and functional similarity Qingfeng ChenZhao ZheYi-Ping Phoebe Chen Erratum 14 September 2020 Pages: 277 - 277
A survey on de novo assembly methods for single-molecular sequencing Ying ChenChuan-Le Xiao Review 14 September 2020 Pages: 203 - 215
Critical transitions and tipping points in EMT Peng WangLuonan Chen Review 11 September 2020 Pages: 195 - 202
Transportation, germs, culture: a dynamic graph model of COVID-19 outbreak Xiaofei YangTun XuKai Ye Research Article 09 September 2020 Pages: 238 - 244
Cellbow: a robust customizable cell segmentation program Huixia RenMengdi ZhaoChao Tang Method 03 September 2020 Pages: 245 - 255
The statistical practice of the GTEx Project: from single to multiple tissues Xu LiaoXiaoran ChaiJin Liu Review 06 August 2020
Integrating brain imaging endophenotypes with GWAS for Alzheimer’s disease Katherine A. KnutsonWei Pan Research Article 06 August 2020
Germline genomes have a dominant-heritable contribution to cancer immune evasion and immunotherapy response Xue JiangMohammad AsadEdwin Wang Review 31 July 2020 Pages: 216 - 227
Monitoring and mathematical modeling of mitochondrial ATP in myotubes at single-cell level reveals two distinct population with different kinetics Naoki MatsudaKen-ichi HironakaShinya Kuroda Research Article 23 July 2020 Pages: 228 - 237
Direct-to-consumer genetic testing in China and its role in GWAS discovery and replication Kang KangXue SunGang Chen Research Article 18 July 2020
DNA sequencing using nanopores and kinetic proofreading Xinsheng Sean Ling Mini Review 02 July 2020 Pages: 187 - 194
Transcriptome-wide association studies: a view from Mendelian randomization Huanhuan ZhuXiang Zhou Review 17 June 2020
A censored-Poisson model based approach to the analysis of RNA-seq data Xing ChenYinglei Lai Research Article 15 June 2020 Pages: 155 - 171
Large-scale analysis of the position-dependent binding and regulation of human RNA binding proteins Jianan LinZhengqing Ouyang Research Article 09 June 2020 Pages: 119 - 129
Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data Lin WanXin KangFengzhu Sun Research Article 22 May 2020 Pages: 143 - 154
Prediction and differential analysis of RNA secondary structure Bo YuYao LuLin Hou Review 09 May 2020 Pages: 109 - 118
Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data Rongbin ZhengXin DongClifford A. Meyer Protocol and Tutorial 04 May 2020 Pages: 267 - 276
Applications of probability and statistics in cancer genomics Xiaotu MaSasi ArunachalamYanling Liu Review 29 April 2020 Pages: 95 - 108
Counting single cells and computing their heterogeneity: from phenotypic frequencies to mean value of a quantitative biomarker Hong QianYu-Chen Cheng Protocol and Tutorial 21 April 2020 Pages: 172 - 176
A pan-cancer integrative pathway analysis of multi-omics data Henry LinderYuping Zhang Research Article 16 March 2020 Pages: 130 - 142
Modeling the epidemic dynamics and control of COVID-19 outbreak in China Shilei ZhaoHua Chen Research Article 11 March 2020 Pages: 11 - 19
Chao Tang: a self-motivated scientist pursues interdisciplinary excellence Yadan HuangYimeng YeJiang Zhang Profile 11 March 2020 Pages: 1 - 3
A simulated annealing approach for resolution guided homogeneous cryo-electron microscopy image selection Jie ShiXiangrui ZengMin Xu Research Article 06 March 2020 Pages: 51 - 63
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor Jingxue XinJunjun HaoYong Wang Research Article 06 March 2020 Pages: 43 - 50
Construction of a CRISPR-based paired-sgRNA library for chromosomal deletion of long non-coding RNAs Minzhen TaoQiaochu MuZhen Xie Research Article 06 March 2020 Pages: 31 - 42
Quantifying E2F1 protein dynamics in single cells Bernard Mathey-PrevotBao-Tran ParkerLingchong You Research Article 06 March 2020 Pages: 20 - 30
Combination of versatile platforms for the development of synthetic biology Baizhu ChenZhuojun Dai Review 06 March 2020 Pages: 4 - 10
Imputation of single-cell gene expression with an autoencoder neural network Md. Bahadur BadshaRui LiAudrey Qiuyan Fu Research Article 22 January 2020 Pages: 78 - 94
Identifying viruses from metagenomic data using deep learning Jie RenKai SongFengzhu Sun Research Article 22 January 2020 Pages: 64 - 77
International Workshop on Applications of Probability and Statistics to Biology, July 11–13, 2019 Minghua DengJianfeng FengFengzhu Sun Meeting Report 20 December 2019 Pages: 177 - 186
Molecular modeling studies of repandusinic acid as potent small molecule for hepatitis B virus through molecular docking and ADME analysis Vijayakumar SubramaniyanReetha SekarRajalakshmi Selvam Research Article 19 December 2019 Pages: 302 - 312
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era Raffaella RizziStefano BerettaPaola Bonizzoni Review 16 December 2019 Pages: 278 - 292
A survey of some tensor analysis techniques for biological systems Farzane YahyanejadRéka AlbertBhaskar DasGupta Review 16 December 2019 Pages: 266 - 277
Emerging deep learning methods for single-cell RNA-seq data analysis Jie ZhengKe Wang Mini Review 16 December 2019 Pages: 247 - 254
Quantitative Biology 2019: Dynamic Signaling in Cells and Embryos Feng LiuYihan LinMiaomiao Tian Meeting Report 10 December 2019 Pages: 335 - 337
Differential methylation analysis for bisulfite sequencing using DSS Hao FengHao Wu Protocol and Tutorial 07 December 2019 Pages: 327 - 334
WEDeepT3: predicting type III secreted effectors based on word embedding and deep learning Xiaofeng FuYang Yang Research Article 07 December 2019 Pages: 293 - 301
Algorithmic approaches to clonal reconstruction in heterogeneous cell populations Wazim Mohammed IsmailEtienne NzabarushimanaHaixu Tang Review 07 December 2019 Pages: 255 - 265
WIPER: Weighted in-Path Edge Ranking for biomolecular association networks Zongliang YueThanh NguyenJake Y. Chen Research Article 11 November 2019 Pages: 313 - 326
Applications of single-cell technology on bacterial analysis Zhixin MaPan M. ChuShuqiang Huang Review 11 September 2019 Pages: 171 - 181
