Volume 6, issue 1, December 2005
182 articles in this issue
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Sal-Site: Integrating new and existing ambystomatid salamander research and informational resources
Authors (first, second and last of 9)
- Jeramiah J Smith
- Srikrishna Putta
- S Randal Voss
- Content type: Commentary
- Open Access
- Published: 16 December 2005
- Article: 181
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A method for accurate detection of genomic microdeletions using real-time quantitative PCR
Authors (first, second and last of 6)
- Rosanna Weksberg
- Simon Hughes
- Jeremy A Squire
- Content type: Research article
- Open Access
- Published: 13 December 2005
- Article: 180
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Comparative genome analysis reveals a conserved family of actin-like proteins in apicomplexan parasites
Authors
- Jennifer L Gordon
- L David Sibley
- Content type: Research article
- Open Access
- Published: 12 December 2005
- Article: 179
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GPX-Macrophage Expression Atlas: A database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults
Authors (first, second and last of 12)
- Graeme R Grimes
- Stuart Moodie
- Peter Ghazal
- Content type: Database
- Open Access
- Published: 12 December 2005
- Article: 178
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Comparative analysis of programmed cell death pathways in filamentous fungi
Authors (first, second and last of 5)
- Natalie D Fedorova
- Jonathan H Badger
- William C Nierman
- Content type: Research article
- Open Access
- Published: 08 December 2005
- Article: 177
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ASAP: Amplification, sequencing & annotation of plastomes
Authors
- Amit Dhingra
- Kevin M Folta
- Content type: Methodology article
- Open Access
- Published: 07 December 2005
- Article: 176
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Sequence comparisons of plasmids pBJS-O of Spiroplasma citri and pSKU146 of S. kunkelii: implications for plasmid evolution
Authors (first, second and last of 5)
- Bharat D Joshi
- Michael Berg
- Ulrich Melcher
- Content type: Research article
- Open Access
- Published: 07 December 2005
- Article: 175
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Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies
Authors (first, second and last of 7)
- H Stanley Kim
- Mark A Schell
- David DeShazer
- Content type: Research article
- Open Access
- Published: 07 December 2005
- Article: 174
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The odorant receptor repertoire of teleost fish
Authors
- Tyler S Alioto
- John Ngai
- Content type: Research article
- Open Access
- Published: 06 December 2005
- Article: 173
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The angiotensin-converting enzyme (ACE) gene family of Anopheles gambiae
Authors (first, second and last of 5)
- Susan Burnham
- Judith A Smith
- Alan D Shirras
- Content type: Research article
- Open Access
- Published: 05 December 2005
- Article: 172
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An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar)
Authors (first, second and last of 5)
- Heidi Hagen-Larsen
- Jon K Laerdahl
- Bjørn Høyheim
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: 171
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Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
Authors (first, second and last of 6)
- Bart MG Smits
- Victor Guryev
- Edwin Cuppen
- Content type: Research article
- Open Access
- Published: 29 November 2005
- Article: 170
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The EH1 motif in metazoan transcription factors
Authors
- Richard R Copley
- Content type: Research article
- Open Access
- Published: 27 November 2005
- Article: 169
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Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes
Authors
- Soohyun Lee
- Isaac Kohane
- Simon Kasif
- Content type: Research article
- Open Access
- Published: 27 November 2005
- Article: 168
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Analysis of vertebrate genomes suggests a new model for clade B serpin evolution
Authors
- Dion Kaiserman
- Phillip I Bird
- Content type: Research article
- Open Access
- Published: 23 November 2005
- Article: 167
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Characterization of 954 bovine full-CDS cDNA sequences
Authors (first, second and last of 9)
- Gregory P Harhay
- Tad S Sonstegard
- Timothy PL Smith
- Content type: Methodology article
- Open Access
- Published: 23 November 2005
- Article: 166
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Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein
Authors (first, second and last of 5)
- Peter ND Hunt
- Michael D Wilson
- Ben F Koop
- Content type: Research article
- Open Access
- Published: 22 November 2005
- Article: 165
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Efficient gene-driven germ-line point mutagenesis of C57BL/6J mice
Authors (first, second and last of 21)
- Edward J Michaud
- Cymbeline T Culiat
- Dabney K Johnson
- Content type: Research article
- Open Access
- Published: 21 November 2005
- Article: 164
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An acquisition account of genomic islands based on genome signature comparisons
Authors (first, second and last of 6)
- MWJ van Passel
- A Bart
- A van der Ende
- Content type: Research article
- Open Access
- Published: 18 November 2005
- Article: 163
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Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria
Authors
- Sébastien Rey
- Jennifer L Gardy
- Fiona SL Brinkman
- Content type: Research article
- Open Access
- Published: 17 November 2005
- Article: 162
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Construction and characterization of a genomic BAC library for the Mus m. musculus mouse subspecies (PWD/Ph inbred strain)
Authors
- Petr Jansa
- Petr Divina
- Jiřà Forejt
- Content type: Research article
- Open Access
- Published: 16 November 2005
- Article: 161
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Leveraging human genomic information to identify nonhuman primate sequences for expression array development
Authors (first, second and last of 8)
- Eliot R Spindel
- Mark A Pauley
- Robert B Norgren Jr
- Content type: Research article
- Open Access
- Published: 15 November 2005
- Article: 160
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Preferential attachment in the evolution of metabolic networks
Authors
- Sara Light
- Per Kraulis
- Arne Elofsson
- Content type: Research article
- Open Access
- Published: 10 November 2005
- Article: 159
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Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains
Authors (first, second and last of 8)
- Elisa Giuntini
- Alessio Mengoni
- Marco Bazzicalupo
- Content type: Research article
- Open Access
- Published: 10 November 2005
- Article: 158
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Genetic mapping of putative Chrna7 and Luzp2 neuronal transcriptional enhancers due to impact of a transgene-insertion and 6.8 Mb deletion in a mouse model of Prader-Willi and Angelman syndromes
Authors (first, second and last of 8)
- Mihaela Stefan
- Kathryn C Claiborn
- Robert D Nicholls
- Content type: Research article
- Open Access
- Published: 09 November 2005
- Article: 157
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The zebrafish progranulin gene family and antisense transcripts
Authors (first, second and last of 4)
- Benoît Cadieux
- Babykumari P Chitramuthu
- Hugh PJ Bennett
- Content type: Research article
- Open Access
- Published: 08 November 2005
- Article: 156
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SSH adequacy to preimplantation mammalian development: Scarce specific transcripts cloning despite irregular normalisation
Authors (first, second and last of 4)
- LC Bui
- RD Léandri
- V Duranthon
- Content type: Methodology article
- Open Access
- Published: 08 November 2005
- Article: 155
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Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni
Authors (first, second and last of 4)
- Thewarach Laha
- Nonglack Kewgrai
- Paul J Brindley
- Content type: Research article
- Open Access
- Published: 04 November 2005
- Article: 154
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A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example
Authors (first, second and last of 7)
- N Balandraud
- P Gouret
- P Pontarotti
- Content type: Methodology article
- Open Access
- Published: 04 November 2005
- Article: 153
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A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish
Authors
- Jennifer G Sambrook
- Felipe Figueroa
- Stephan Beck
- Content type: Research article
- Open Access
- Published: 04 November 2005
- Article: 152
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cGMP-independent nitric oxide signaling and regulation of the cell cycle
Authors (first, second and last of 12)
- Xiaolin Cui
- Jianhua Zhang
- Robert L Danner
- Content type: Research article
- Open Access
- Published: 03 November 2005
- Article: 151
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Proposed methods for testing and selecting the ERCC external RNA controls
Authors
- External RNA Controls Consortium
- Content type: Methodology article
- Open Access
- Published: 02 November 2005
- Article: 150
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SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
Authors (first, second and last of 7)
- Matthew J Huentelman
- David W Craig
- Dietrich A Stephan
- Content type: Research article
- Open Access
- Published: 31 October 2005
- Article: 149
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Specificity and overlap in gene segment-defined antibody repertoires
Authors
- Ramy A Arnaout
- Content type: Research article
- Open Access
- Published: 28 October 2005
- Article: 148
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Limitations of mRNA amplification from small-size cell samples
Authors (first, second and last of 6)
- Vigdis Nygaard
- Marit Holden
- Eivind Hovig
- Content type: Research article
- Open Access
- Published: 27 October 2005
- Article: 147
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Identification of genes involved in Ca2+ ionophore A23187-mediated apoptosis and demonstration of a high susceptibility for transcriptional repression of cell cycle genes in B lymphoblasts from a patient with Scott syndrome
Authors (first, second and last of 10)
- Detlef Kozian
- Valérie Proulle
- Danièle Kerbiriou-Nabias
- Content type: Research article
- Open Access
- Published: 21 October 2005
- Article: 146
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i-Tracker: For quantitative proteomics using iTRAQâ„¢
Authors (first, second and last of 4)
- Ian P Shadforth
- Tom PJ Dunkley
- Conrad Bessant
- Content type: Software
- Open Access
- Published: 20 October 2005
- Article: 145
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Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
Authors (first, second and last of 22)
- Nathalie Pavy
- Charles Paule
- John MacKay
- Content type: Research article
- Open Access
- Published: 19 October 2005
- Article: 144
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EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
Authors (first, second and last of 11)
- Eric D Brenner
- Manpreet S Katari
- Gloria M Coruzzi
- Content type: Research article
- Open Access
- Published: 15 October 2005
- Article: 143
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Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles
Authors (first, second and last of 13)
- Elza C de Bruin
- Simone van de Pas
- Lucy TC Peltenburg
- Content type: Research article
- Open Access
- Published: 14 October 2005
- Article: 142
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The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae
Authors (first, second and last of 4)
- Rena Matsumoto
- Kuniko Akama
- Hitoshi Iwahashi
- Content type: Research article
- Open Access
- Published: 07 October 2005
- Article: 141
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The distribution of SNPs in human gene regulatory regions
Authors
- Yongjian Guo
- D Curtis Jamison
- Content type: Research article
- Open Access
- Published: 06 October 2005
- Article: 140
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In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs)
Authors (first, second and last of 6)
- Helge Otto
- Pedro A Reche
- Friedrich Koch-Nolte
- Content type: Research article
- Open Access
- Published: 04 October 2005
- Article: 139
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Identification of disease causing loci using an array-based genotyping approach on pooled DNA
Authors (first, second and last of 9)
- David W Craig
- Matthew J Huentelman
- Dietrich A Stephan
- Content type: Methodology article
- Open Access
- Published: 30 September 2005
- Article: 138
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A TNF-induced gene expression program under oscillatory NF-κB control
Authors
- Bing Tian
- David E Nowak
- Allan R Brasier
- Content type: Research article
- Open Access
- Published: 28 September 2005
- Article: 137
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Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich
Authors
- Patrick C Bradshaw
- Anand Rathi
- David C Samuels
- Content type: Research article
- Open Access
- Published: 26 September 2005
- Article: 136
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Construction and validation of a Bovine Innate Immune Microarray
Authors (first, second and last of 9)
- Laurelea Donaldson
- Tony Vuocolo
- Ross Tellam
- Content type: Research article
- Open Access
- Published: 22 September 2005
- Article: 135
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GeneSeer: A sage for gene names and genomic resources
Authors
- Andrew J Olson
- Tim Tully
- Ravi Sachidanandam
- Content type: Software
- Open Access
- Published: 21 September 2005
- Article: 134
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Comparative analysis of a BAC contig of porcine chromosome 13q31-q32 and human chromosome 3q21-q22
Authors (first, second and last of 7)
- Mario Van Poucke
- David Bourry
- Luc J Peelman
- Content type: Research article
- Open Access
- Published: 21 September 2005
- Article: 133