Abstract
Nuclear genome size is strongly influenced by the number, size and morphology of chromosomes, and there is often a good correlation between genome size and total chromosome length within a karyotype. Because aneuploidy or the presence of accessory chromosomes has repeatedly been reported within the Anthoxanthum aristatum/ovatum complex (Poaceae), both phenomena have to be considered as potential sources of genome size variability within this group. This variability in nuclear genome size reaches 40 %, not only within the complex but also within single populations. Genome size variation, however, does not necessarily correlate positively with the number of chromosomes, as our data also indicate. Although our karyological survey revealed the presence of at least one B-chromosome in 44 % of individuals, we found almost no correlation between the number of B-chromosomes and genome size variability. The presence of B-chromosomes usually increases individual genome size, but does not affect substantially the extent of variability within the complex or population regardless of whether individuals with accessory chromosomes are included. These findings indicate that changes mainly in A-chromosomes are responsible for a huge fraction of genome size variability in the A. aristatum/ovatum complex.
References
Burgess A, Vigneron S, Brioudes E, Labbe J-C, Lorca T, Castro A (2010) Loss of human Greatwall results in G2 arrest and multiple mitotic defects due to deregulation of the cyclin B-Cdc2/PP2A balance. Proc Natl Acad Sci USA 107:12564–12569. doi:10.1073/pnas.0914191107
Chumová Z, Krejčíková J, Mandáková T, Suda J, Trávníček P (2015) Evolutionary and taxonomic implications of variation in nuclear genome size: lesson from the grass genus Anthoxanthum (Poaceae). PLOS one 10(7):e0133748. doi:10.1371/journal.pone.0133748
Doležel J, Bartoš J (2005) Plant DNA flow-cytometry and estimation of nuclear genome size. Ann Bot (Oxford) 95:99–110
Doležel J, Greilhuber J, Suda J (2007a) Flow cytometry with plants: An overview. In: Doležel J, Greilhuber J, Suda J (eds) Flow cytometry with plant cells. Wiley–VCH, Weinheim, pp 41–65. doi:10.1002/9783527610921.ch3
Doležel J, Greilhuber J, Suda J (2007b) Estimation of nuclear DNA content in plants using flow cytometry. Nat Protoc 2:2233–2244
Fernandes A, Queirós M (1969) Contribution à la connaissance cytotaxonomique des spérmatophyta du Portugal. IV. Leguminosae. Bol Soc Brot 45:177–226
Galbraith DW, Harkins KH, Maddox JM, Ayres NM, Sharma DP, Firoozabady E (1983) Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science 220:1049–1051
Greilhuber J (1998) Intraspecific variation in genome size: a critical reassessment. Ann Bot (Oxford) 82:27–35
Greilhuber J (2005) Intraspecific variation in genome size in Angiosperms: identifying its existence. Ann Bot (Oxford) 95:91–98. doi:10.1093/aob/mci004
Greilhuber J (2008) Cytochemistry and c-values: the less-well-known world of nuclear DNA amounts. Ann Bot (Oxford) 101:791–804. doi:10.1093/aob/mcm250
Greilhuber J, Doležel J, Lysák MA, Bennett MD (2005) The origin, evolution and proposed stabilization of the terms ‘Genome size’ and ‘C-value’ to describe nuclear DNA contents. Ann Bot (Oxford) 95:255–260
Houben A, Banaei-Moghaddam AM, Klemme S (2013) Biology and Evolution of B Chromosomes. In: Greilhuber J, Dolezel J, Wendel JF (eds) Plant Genome Diversity Volume 2. Springer Vienna, pp 149–165
Hulquist SJ, Vogel KP, Lee DJ, Arumuganathan K, Kaeppler S (1996) Chloroplast DNA and nuclear DNA content variations among cultivars of switchgrass, Panicum virgatum L. Crop Sci (Madison) 36:1049–1052
Jones N, Houben A (2003) B chromosomes in plants: escapees from the A chromosome genome? Trends Pl Sci 8:417–423
Jones RN, Rees H (1982) B-Chromosomes. Academic Press, New York
Jones RN, Viegas W, Houben A (2008) A century of B chromosomes in plants: so what? Ann Bot (Oxford) 101:767–775. doi:10.1093/aob/mcm167
Leitch I, Kahandawala I, Suda J, Hanson L, Ingrouille MJ, Chase MW, Fay MF (2009) Genome diversity in orchids: consequences and evolution. Ann Bot (Oxford) 104:469–481. doi:10.1093/aob/mcp003
Leong-Škorničková J, Šída O, Jarolímová V, Sabu M, Fér T, Trávníček P, Suda J (2007) Chromosome numbers and genome size variation in Indian species of Curcuma (Zingiberaceae). Ann Bot (Oxford) 100:505–526. doi:10.1093/aob/mcm144
Levene H (1960) Robust tests for equality of variances. In: Olkin I, Hotelling H, et al. (eds) Contributions to Probability and Statistics: Essays in Honor of Harold Hotelling. Stanford University Press, pp. 278–292
Levin DA, Palestis BG, Jones RN, Trivers R (2005) Phyletic hot spots for B chromosomes in Angiosperms. Evolution 59:962–969
Michaelson MJ, Price HJ, Ellison JR, Johnston JS (1991) Comparison of DNA plant contents determined by Feulgen microspectrophotometry and laser flow cytometry. Amer J Bot 78:183–188
Östergren G (1942) Chromosome numbers of Anthoxanthum. Hereditas (Lund) 28:242–243
Östergren G (1947) Heterochromatic B-chromosomes in Anthoxanthum. Hereditas (Lund) 33:261–296
Otto F (1990) DAPI staining of fixed cells for high-resolution flow cytometry of nuclear DNA. In: Crissman HA, Darzynkiewicz Z (eds) Methods in cell biology, vol 33. Academic Press, New York
Palestis BG, Trivers R, Burt A, Jones RN (2004) The distribution of B-chromosomes across species. Cytogenet Genome Res 106:151–158
Pimentel M, Estévez S, Sahuquillo E (2007) European sweet vernal grasses (Anthoxanthum, Poaceae; Pooideae; Aveneae): a morphometric taxonomical approach. Syst Bot 32:43–59. doi:10.1600/036364407780360201
Pimentel M, Catalán P, Sahuquillo E (2010) Morphological and molecular taxonomy of the annual diploids Anthoxanthum aristatum and A. ovatum (Poaceae) in the Iberian Peninsula. Evidence of introgression in natural populations. Bot J Linn Soc 164:53–71. doi:10.1111/j.1095-8339.2010.01068.x
Poggio L, Rosato M, Chiavarino AM, Naranjo CA (1998) Genome size and environmental correlation in maize (Zea mays ssp. mays, Poaceae). Ann Bot (Oxford) 82:107–115
Potapova TA, Sivakumar S, Flynn JN, Li R, Gorbsky GJ (2011) Mitotic progression becomes irreversible in prometaphase and collapses when Wee1 and Cdc25 are inhibited. Molec Biol Cell 22:1191–1206. doi:10.1091/mbc.E10-07-0599
R Development Core Team (2015) R: A language and environment for statistical computing. Vienna, Austria. ISBN 3-900051-07-0. http://WWW.R-project.org
Rosado TB, Clarindo WR, Carvalho CR (2009) An integrated cytogenetic, flow and image cytometry procedure used to measure the DNA content of Zea mays A and B chromosomes. Pl Sci (Elsevier) 176:154–158. doi:10.1016/j.plantsci.2008.10.007
Rosato M, Chiavarino AM, Naranjo CA, Camara Hernandes J, Poggio L (1998) Genome size and numerical polymorphism for the B-chromosome of races of maize (Zea mays ssp. mays, Poaceae). Amer J Bot 85:1068–1174
Šmarda P, Bureš P (2010) Understanding intraspecific variation in genome size in plants. Preslia 82:41–61
Suda J, Krahulcová A, Trávníček P, Krahulec F (2006) Ploidy level versus DNA ploidy level: an appeal for consistent terminology. Taxon 55:447–450
Trivers R, Burt A, Palestis BG (2004) B chromosomes and genome size in flowering plants. Genome 47:1–8. doi:10.1139/G03-088
Valdès B (1973) Revisión de las especies anuales del género Anthoxanthum (Graminae). Lagascalia 3:99–141
Acknowledgments
We are grateful to Jana Krejčíková, Paulo Silveira and Jaroslav Zahradníček for their help during fieldwork, to Jan Suda for his helpful comments and to Frederick Rooks for his language advice. The research was financially supported by Charles University in Prague (GAUK Projects nos. 66109 and 541413). Additional support was supplied by the Academy of Sciences of the Czech Republic (Project RVO 67985939).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Handling editor: Hanna Schneeweiss.
Electronic Supplementary Material
Below is the link to the electronic supplementary material.
606_2016_1295_MOESM1_ESM.pdf
Fig. 5 Micrographs of somatic metaphase chromosomes of all individuals under detailed investigation. B-chromosomes are indicated by arrows. (PDF 4410 kb)
Information on Electronic Supplementary Material
Information on Electronic Supplementary Material
Online Resource 1. Fig. 5 Micrographs of somatic metaphase chromosomes of all individuals under detailed investigation. B-chromosomes are indicated by arrows
Rights and permissions
About this article
Cite this article
Chumová, Z., Mandáková, T. & Trávníček, P. Are B-chromosomes responsible for the extraordinary genome size variation in selected Anthoxanthum annuals?. Plant Syst Evol 302, 731–738 (2016). https://doi.org/10.1007/s00606-016-1295-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00606-016-1295-5