Abstract
The natural environment contains a diverse range of microorganisms and plants, which interact with each other in a variety of ways. This interaction may range from two-partite symbiosis (formation of single nodule by symbiotic association of legume and rhizobia which assists in nitrogen fixation in environment) to multi-partite epiphytic or endophytic. There are some exudates produced by soil microorganisms which help in recycling of essential nutrients like phosphorus and nitrogen. A fundamental understanding of evolution, molecular biology, genetics, and ecology are required to promote sustainable agricultural practices based on microbes. The recruitment of such fields of compatible researches may help to have a remarkable productive capacity and versatile function as well. Crop production based upon the microbes has the potential to replace the existing harmful chemicals, with biofertilizers, and therefore aid in economic benefit and enrich the quality of agricultural goods obtained.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Abisado RG, Benomar S, Klaus JR, Dandekar AA, Chandler JR (2018) Bacterial quorum sensing and microbial community interactions. mBio 9:e02331–e02317. https://doi.org/10.1128/mBio.02331-17
Al shehrei F (2017) Biodegradation of synthetic and natural plastic by microorganisms. J Appl Environ Microbiol 5:8–19
Ali SS, Vidhale NN (2013) Bacterial siderophore and their application: a review. Int J Curr Microbiol App Sci 2:303–312
Babalola OO (2010) Beneficial bacteria of agricultural importance. Biotechnol Lett 32:1559–1570
Babbal, Adivitiya, Khasa YP (2017) Microbes as biocontrol agents. In: Kumar V, Kumar M, Sharma S, Prasad R (eds) Probiotics in plant health. Springer, Singapore, pp 507–552
Bailey-Serres J, Voesenek LA (2008) Flooding stress: acclimations and genetic diversity. Annu Rev Plant Biol 59:313–339
Beneduzi A, Ambrosini A, Passaglia LMP (2012) Plant growth-promoting rhizobacteria (PGPR): their potential as antagonists and biocontrol agents. Genet Mol Biol 35:1044–1051
Berg G (2009) Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture. Appl Microbiol Biotechnol 84:11–18
Bisseling T, Dangl JL, Schulze-Lefert P (2009) Next-generation communication. Science 324:691. https://doi.org/10.1126/science.1174404
Borriss R (2011) Use of plant-associated Bacillus strains as biofertilizers and biocontrol agents in agriculture. In: Maheshwari DK (ed) Bacteria in agrobiology: plant growth responses. Springer, Berlin, Heidelberg, pp 41–76
Brierley JA (1985) Use of microorganisms for mining metals. In: Halvorson HO, Pramer D, Rogul M (eds) Engineered organisms in the environment: scientific issues. ASM Press, Washington, pp 141–146
Burdman S, Jurkevitch E, Okon Y (2000) Recent advance in the use of plant growth promoting rhizobacteria (PGPR) in agriculture. In: Subba Rao NS, Dommergues YR (eds) Microbial interactions in agriculture forestry, vol II. Science Publishers Inc., Einfeld NH, pp 229–250
Capper AL, Higgin KP (1993) Application of Pseudomonas fluorescens isolates to wheat as potential biological control agents against take-all. Plant Pathol 42:560–567
Castro-Sowinski S, Herschkovitz Y, Okon Y, Jurkevitch E (2007) Effects of inoculation with plant growth-promoting rhizobacteria on resident rhizosphere microorganisms. FEMS Microbiol Lett 276:1–11
Chaves MM, Oliveira MM (2004) Mechanisms underlying plant resilience to water deficits: prospects for water-saving agriculture. J Exp Bot 55:2365–2384. https://doi.org/10.1093/jxb/erh269
Clark RB, Zeto SK (2000) Mineral acquisition by arbuscular mycorrhizal plants. J Plant Nutr 23:867–902
Contreras-Cornejo HA, Macias-Rodriguez L, Cortés-Penagos C, López-Bucio J (2009) Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. Plant Physiol 149:1579–1592
Cramer GR, Urano K, Delrot S, Pezzotti M, Shinozaki K (2011) Effects of abiotic stress on plants: a systems biology perspective. BMC Plant Biol 11:163–176
de Paula TJ, Rotter C, Han B (2001) Effect of soil moisture and panting date on Rhizoctonia root rot of beans and its control by Trichoderma harizanum. J Am Sci Bull 24:99–110
DeAngelis KM, Lindow SE, Firestone MK (2008) Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. FEMS Microbiol Ecol 66:197–207
Dekas AD, Poretsky RS, Orphan VJ (2009) Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortium. Science 326:422–426
Dobbelaere S, Vanderleyden J, Okon Y (2003) Plant growth promoting effects of diazotrophs in the rhizosphere. Crit Rev Plant Sci 22:107–149
Ehrlich HL (1990) Geomicrobiology, 2nd edn. Dekker, New York, pp 646–697
Farrar K, Bryant D, Cope-Selby N (2014) Understanding and engineering beneficial plant–microbe interactions: plant growth promotion in energy crops. Plant Biotechnol J 12:1193–1206
Fisher RF, Long SR (1992) Rhizobium-plant signal exchange. Nature 357:655–660
Fisher RF, Tu JK, Long SR (1985) Conserved nodulation genes in Rhizobium meliloti and Rhizobium trifolii. Appl Environ Microbiol 49:1432–1435
Frey-Klett P, Garbaye J, Tarkka M (2007) The mycorrhizae helper bacteria revisited. New Phytol 176:22–36
GarcÃa de Salome IE, Hynes RK, Nelson LM (2001) Cytokinin production by plant growth promoting rhizobacteria and selected mutants. Can J Microbiol 47:404–411
Glick BR (2012) Plant growth-promoting bacteria: mechanisms and applications. Scientifica 2012:963401. https://doi.org/10.6064/2012/963401
Glick BR (2014) Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiol Res 169:30–39
Glick BR (2015) Beneficial plant-bacterial interactions. Springer, Heidelberg
Glick BR, Cheng Z, Czarny J, Duan J (2007) Promotion of plant growth by ACC deaminase-producing soil bacteria. Eur J Plant Pathol 119:329–339
Grayson M (2013) Agriculture and drought. Nature 501:S1. https://doi.org/10.1038/501S1a
Guaiquil VH, Luigi C (1992) Plant growth promoting rhizobacteria and their effect on rapeseed (Brassica napus L.) and potato seedlings. Microbiol Rev 23:264–273
Haran S, Schickler H, Oppenheim A, Chet I (1995) New components of the chitinolytic system of Trichoderma harzianum. Mycol Res 99:441–446
Harman GE (2006) Overview of mechanisms and uses of Trichoderma spp. Phytopathology 96:190–194
Hayat R, Safdar Ali S, Amara U, Khalid R, Ahmed I (2010) Soil beneficial bacteria and their role in plant growth promotion: a review. Ann Microbiol 60:579–598
Hermosa R, Botella L, Alonso-RamÃrez A, Arbona V, Gómez-Cadenas A, Monte E, Nicolás C (2011) Biotechnological applications of the gene transfer from the beneficial fungus Trichoderma harzianum spp. to plants. Plant Signal Behav 6:8–21
Hermosa R, Viterbo R, Chet I, Monte R (2012) Plant-beneficial effects of Trichoderma and of its genes. Microbiology 158:17–25
Hurek T, Handley LL, Reinhold-Hurek B, Piche Y (2002) Azoarcus grass endophytes contribute fixed nitrogen to the plant in an unculturable state. Mol Plant-Microbe Interact 15:233–242
Idriss EE, Makarewicz O, Farouk A, Rosner K, Greiner R, Bochow H, Richter T, Borriss R (2002) Extracellular phytase activity of Bacillus amyloliquefaciens FZB45 contributes to its plant-growth promoting effect. Microbiology 148:2097–2109
Igual JM, Valverde A, Cervantes E, Velaquez E (2001) Phosphate solubilizing bacteria as inoculants for agriculture: use of updated molecular techniques in their study. Agronomie 21:561–568
Iizumi T, Ramankutty N (2015) How do weather and climate influence cropping area and intensity? Glob Food Sec 4:45–50
Jousset A, Rochat L, Lanoue A, Bonkowski M, Keel C, Scheu S (2011) Plants respond to pathogen infection by enhancing the antifungal gene expression of root-associated bacteria. Mol Plant-Microbe Interact 24:352–358
Kamilova F, Kravchenko LV, Shaposhnikov AI, Azarova T, Makarova N, Lugtenberg BJJ (2006a) Organic acids, sugars, and L-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria. Mol Plant-Microbe Interact 19:250–256
Kamilova F, Kravchenko LV, Shaposhnikov AI, Makarova N, Lugtenberg B (2006b) Effects of the tomato pathogen Fusarium oxysporum f. sp. radicis-lycopersici and of the biocontrol bacterium Pseudomonas fluorescens WCS365 on the composition of organic acids and sugars in tomato root exudate. Mol Plant-Microbe Interact 19:1121–1126
Kang Y, Khan S, Ma X (2009) Climate change impacts on crop yield, crop water productivity and food security—a review. Prog Nat Sci 19:1665–1674
Kesaulya H, Hasinu JV, Tuhumury GNC (2018) Potential of Bacillus spp produces siderophores in suppressing the wilt disease of banana plants. IOP Conf. Series: Earth and Environmental Science 102:012016. https://doi.org/10.1088/1755-1315/102/1/012016
Kim KY, Jordan D, McDonald GA (1998) Enterobacter agglomerans, phosphate solubilizing bacteria and microbial activity in soil: effect of carbon sources. Soil Biol Biochem 30:995–1003
Lehr P (2010) Biopesticides: the global market. Report code CHM029B, BCC Research, Wellesley, MA
Lemanceau P, Bauer P, Kraemer S, Briat JF (2009) Iron dynamics in the rhizosphere as a case study for analyzing interactions between soils, plants and microbes. Plant Soil 321:513–535
Lipton DS, Blanchar RW, Blevins DG (1987) Citrate, malate and succinate concentration in exudates from P-sufficient and P-stressed Medicago sativa L. seedlings. Plant Physiol 85:315–317
Lorito M, Woo SL, Harman GE, Monte E (2010) Translational research on Trichoderma: from ‘omics’ to the field. Annu Rev Phytopathol 48:395–417
Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63:541–556
Maillet F, Poinsot V, André O, Puech-Pages V, Haouy A, Guenier M, Cromer L (2011) Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza. Nature 469:58–63
Malik DK, Sindhu SS (2011) Production of indole acetic acid by Pseudomonas sp.: effect of coinoculation with Mesorhizobium sp. Cicer on nodulation and plant growth of chickpea (Cicer arietinum). Physiol Mol Biol Plants 17:25–32
Markmann K, Parniske M (2009) Evolution of root endosymbiosis with bacteria: how novel are nodules? Trends Plant Sci 14:77–86
Mastouri F, Björkman T, Harman GE (2010) Seed treatment with Trichoderma harzianum alleviates biotic, abiotic, and physiological stresses in germinating seeds and seedlings. Phytopathology 100:1213–1221
Meena KK, Sorty AM, Bitla UM, Choudhary K, Gupta P, Pareek A, Singh DP, Prabha R, Sahu PK, Gupta VK, Singh HB, Krishanani KK, Minhas PS (2017) Abiotic stress responses and microbe-mediated mitigation in plants: the omics strategies. Front Plant Sci 8:172. https://doi.org/10.3389/fpls.2017.00172
Miethke M, Marahiel MA (2007) Siderophore-based iron acquisition and pathogen control. Microbiol Mol Biol Rev 71:413–451
Minaxi LN, Yadav RC, Saxena J (2012) Characterisation of multifaceted Bacillus sp. RM-2 for its use as plant growth promoting bioinoculant for crops grown in semi-arid deserts. Appl Soil Ecol 59:124–135
Mittler R (2006) Abiotic stress, the field environment and stress combination. Trends Plant Sci 11:15–19
Nakashima K, Yamaguchi-Shinozaki K (2006) Regulons involved in osmotic stress-responsive and cold stress-responsive gene expression in plants. Physiol Plant 126:62–71. https://doi.org/10.1111/j.1399-3054.2005.00592.x
Ngumbi E, Kloepper J (2014) Bacterial-mediated drought tolerance: current and future prospects. Appl Soil Ecol 105:109–125. https://doi.org/10.1016/j.apsoil.2016.04.009
Nguyen D, Rieu I, Mariani C, van Dam NM (2016) How plants handle multiple stresses: hormonal interactions underlying responses to abiotic stress and insect herbivory. Plant Mol Biol 91:727–740
Okon Y, Labandera-Gonzalez CA (1994) Agronomic applications of Azospirillum: an evaluation of 20 years worldwide field inoculation. Soil Biol Biochem 26:1591–1601
Orozco-Mosqueda MDC, Rocha-Granados MDC, Glick BR, Santoyo G (2018) Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms. Microbiol Res 208:25–31
Parmar N, Dadarwal KR (1997) Rhizobacteria from rhizosphere and rhizoplane of chick pea (Cicer arietinum L.). Indian J Microbiol 37:205–210
Ramette A, Frapolli M, Fischer-Le Saux M, Gruffaz C, Meyer JM, Défago G, Sutra L, Moënne-Loccoz Y (2011) Pseudomonas protegens sp. nov., widespread plant protecting bacteria producing the biocontrol compounds 2, 4-diacetylphloroglucinol and pyoluteorin. Syst Appl Microbiol 34:80–88
Richardson AE, Simpson RJ (2011) Soil microorganisms mediating phosphorus availability. Plant Physiol 156:989–996
Richardson AE, Barea J-M, McNeill AM, Prigent-Combaret C (2009) Acquisition of phosphorous and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant Soil 321:305–339
Rodriguez H, Frago R (1999) Phosphate solubilising bacteria and their role in plant growth promotion. Biotechnol Adv 17:319–339
Rodriguez H, Fraga R, Gonzalez T, Bashan Y (2006) Genetics of phosphate solubilisation and its potential applications for improving plant growth-promoting bacteria. Plant Soil 287:15–21
Ruocco M, Lanzuise S, Vinale F, Marra R, Turra D, Woo SL, Lorito M (2009) Identification of a new biocontrol gene in Trichoderma viride: the role of an ABC transporter membrane pump in the interaction with different plant–pathogenic fungi. Mol Plant-Microbe Interact 22:291–301
Sandhya V, Ali SKZ, Grover M, Reddy G, Venkateswarlu B (2009) Alleviation of drought stress effects in sunflower seedlings by exopolysaccharides producing Pseudomonas putida strain GAP-P45. Biol Fertil Soils 46:17–26
Sasirekha B, Srividya S (2016) Siderophore production by Pseudomonas aeruginosa FP6, a biocontrol strain for Rhizoctonia solani and Colletotrichum gloeosporioides causing diseases in chilli. Agric Nat Resour 50:250–256
Schuster A, Schmoll M (2010) Biology and biotechnology of Trichoderma. Appl Microbiol Biotechnol 87:787–799
Sessitsch A, Hardoim P, Döring J, Weilharter A, Krause A, Woyke T et al (2012) Functional characteristics of an endophyte community colonizing roots as revealed by metagenomic analysis. Mol Plant-Microbe Interact 25:28–36
Sevilla M, Burris RH, Gunapala N, Kennedy C (2001) Comparison of benefit to sugarcane plant growth and 15N2 incorporation following inoculation of sterile plants with Acetobacter diazotrophicus wild type and Nif-mutant strains. Mol Plant-Microbe Interact 14:358–366
Shoresh M, Harman GE, Mastouri F (2010) Induced systemic resistance and plant responses to fungal biocontrol agents. Annu Rev Phytopathol 48:1–23
Singh HB (2014) Management of plant pathogens with microorganisms. Proc Indian Natl Sci Acad 80:443–454
Singh R, Singh P, Sharma R (2014a) Microorganism as a tool of bioremediation technology for cleaning environment: a review. Proc Int Acad Ecol Environ Sci 4:1–6
Singh S, Singh BK, Yadav SM, Gupta AK (2014b) Potential of biofertilizers in crop production in Indian agriculture. Am J Plant Nutr Fertil Technol 4:33–40
Smith SE, Read DJ (2008) Mycorrhizal symbiosis, 3rd edn. Elsevier, Academic, Amsterdam
Smyth E (2011) Selection and analysis of bacteria on the basis of their ability to promote plant development and growth. PhD Thesis, University College Dublin, Dublin
Stacey G, Paau AS, Brill WJ (1980) Host recognition in the rhizobium-soybean symbiosis. Plant Physiol 66:609–614
Tiwari S, Prasad V, Lata C (2019) Bacillus: plant growth promoting bacteria for sustainable agriculture and environment. In: Singh JS, Singh DP (eds) New and future developments in microbial biotechnology and bioengineering. Elsevier, Amsterdam, pp 43–55
Turner TR, James EK, Poole PS (2013) The plant microbiome. Genome Biol 14:209. https://doi.org/10.1186/gb-2013-14-6-209
Vance CP (2001) Symbiotic nitrogen fixation and phosphorus acquisition: plant nutrition in a world of declining renewable resources. Plant Physiol 127:390–397
Vance CP, Ehde-Stone C, Allan DL (2003) Phosphorous acquisition and use: critical adaptations by plants for screening a renewable resource. New Phytol 157:423–447
Vejan P, Abdullah R, Khadiran T, Ismail S, Boyce AN (2016) Role of plant growth promoting rhizobacteria in agricultural sustainability—a review. Molecules 21:573–591
Verbon EH, Liberman LM (2016) Beneficial microbes affect endogenous mechanisms controlling root development. Trends Plant Sci 21:218–229
Vinale F, Flematti G, Sivasithamparam K, Lorito M, Marra R, Skelton BW, Ghisalberti EL (2009) Harzianic acid, an antifungal and plant growth promoting metabolite from Trichoderma harzianum. J Nat Prod 72:2032–2035
Vyas P, Gulati A (2009) Organic acid production in vitro and plant growth promotion in maize under controlled environment by phosphate-solubilizing fluorescent Pseudomonas. BMC Microbiol 9:174–189
Whipps JM (1997) Ecological considerations involved commercial development of biological control agents for soil-borne disease. In: Van Elsas JD, Trevors JT, Wellington EMH (eds) Modern soil microbiology. Marcel Dekker, New York, pp 525–533
Wu SC, Cao ZH, Li ZG, Cheung KC, Wong MH (2005) Effect of biofertiliser containing N-fixer, P and K solubilizers and AM fungi on maize growth: a greenhouse trial. Geoderma 125:155–166
Yadav A, Yadav K (2017) Exploring the potential of endophytes in agriculture: a mini review. Adv Plants Agric Res 6:102–106
Zhang H, Sun Y, Xie X, Kim MS, Dowd SE, Pare PW (2008) A Soil bacterium regulates plant acquisition of iron via deficiency-inducible mechanisms. Plant J 58:568–577
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.
About this chapter
Cite this chapter
Rani, U., Kumar, M., Kumar, V. (2021). Approach Towards Sustainable Crop Production by Utilizing Potential Microbiome. In: Seneviratne, G., Zavahir, J.S. (eds) Role of Microbial Communities for Sustainability. Microorganisms for Sustainability, vol 29. Springer, Singapore. https://doi.org/10.1007/978-981-15-9912-5_9
Download citation
DOI: https://doi.org/10.1007/978-981-15-9912-5_9
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-15-9911-8
Online ISBN: 978-981-15-9912-5
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)