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M13-Tailed Simple Sequence Repeat (SSR) Markers in Studies of Genetic Diversity and Population Structure of Common Oat Germplasm

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1536))

Abstract

Simple Sequence Repeat (SSR) markers are one of the most frequently used molecular markers in studies of crop diversity and population structure. This is due to their uniform distribution in the genome, the high polymorphism, reproducibility, and codominant character. Additional advantages are the possibility of automatic analysis and simple interpretation of the results. The M13 tagged PCR reaction significantly reduces the costs of analysis by the automatic genetic analyzers. Here, we also disclose a short protocol of SSR data analysis.

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Author information

Authors and Affiliations

  1. Department of Functional Genomics, Plant Breeding and Acclimatization Institute – National Research Institute, Błonie, Poland

    Agnieszka Onyśk

  2. National Centre for Plant Genetic Resources, Plant Breeding and Acclimatization Institute – National Research Institute, Radzików, 05-870, Błonie, Poland

    Maja Boczkowska

Authors
  1. Agnieszka Onyśk
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  2. Maja Boczkowska
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Corresponding author

Correspondence to Maja Boczkowska .

Editor information

Editors and Affiliations

  1. Department of Functional Genomics, Plant Breeding & Acclimatization Inst. National Research Institute, Blonie, Poland

    Sebastian Gasparis

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Onyśk, A., Boczkowska, M. (2017). M13-Tailed Simple Sequence Repeat (SSR) Markers in Studies of Genetic Diversity and Population Structure of Common Oat Germplasm. In: Gasparis, S. (eds) Oat. Methods in Molecular Biology, vol 1536. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6682-0_12

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  • DOI: https://doi.org/10.1007/978-1-4939-6682-0_12

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6680-6

  • Online ISBN: 978-1-4939-6682-0

  • eBook Packages: Springer Protocols

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