Abstract
Resuscitation promoting factors (Rpfs), belonging to a family of secreted actinobacterial proteins with predicted peptidoglycan (PG) hydrolytic activities, participate in the reactivation of dormant cells. In the present study we demonstrate that a recombinant truncated form of Micrococcus luteus Rpf hydrolyzes isolated PG of Mycobacterium smegmatis and Mycobacterium tuberculosis liberating PG fragments of different size. These fragments possess stimulatory activity toward “non-culturable” dormant M. smegmatis and M. tuberculosis cells, similar to the activity of recombinant Rpf. Relatively large PG fragments (0.1–0.5 μm) obtained either by Rpf digestion or by PG ultrasonication revealed resuscitation activities when added in concentrations 0.1–0.2 μg/ml to the resuscitation medium. It is suggested that PG fragments could either directly activate the resuscitation pathway of dormant mycobacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity. Whilst both suggestions are plausible, it was observed that PG-dependent resuscitation activity was suppressed by means of a specific Rpf inhibitor (4-benzoyl-2-nitrophenylthiocyanate), which provides additional support for the second of these possibilities.
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References
Barthe P, Mukamolova GV, Roumestand C, Cohen-Gonsaud M (2010) The structure of PknB extracellular PASTA domain from mycobacterium tuberculosis suggests a ligand-dependent kinase activation. Structure 18:606–615
Boudreau MA, Fisher JF, Mobashery S (2012) Messenger functions of the bacterial cell wall-derived muropeptides. Biochemistry 51:2974–2990
Cohen-Gonsaud M, Keep NH, Davies AP, Ward J, Henderson B, Labesse G (2004) Resuscitation-promoting factors possess a lysozyme-like domain. Trends Biochem Sci 1:7–10
Cohen-Gonsaud M, Barthe P, Bagnéris C, Henderson B, Ward J, Roumestand C, Keep NH (2005) The structure of a resuscitation-promoting factor domain from Mycobacterium tuberculosis shows homology to lysozymes. Nat Struct Mol Biol 12:270–273
De Man JC (1975) The probability of most probable numbers. Eur J Appl Microbiol 1:67–78
Demina GR, Makarov VA, Nikitushkin VD, Ryabova OB, Vostroknutova GN, Salina EG, Shleeva MO, Goncharenko AV, Kaprelyants AS (2009) Finding of the low molecular weight inhibitors of resuscitation promoting factor enzymatic and resuscitation activity. PLoS One 12:8174
DuBois M, Gilles KA, Hamilton JK, Rebers PA, Smith F (1956) Colorimetric method for determination of sugars and related substances. Anal Chem 28:350–356
Dworkin J, Shah IM (2010) Exit from dormancy in microbial organisms. Nat Rev Microbiol 8:890–896
Hett EC, Chao MC, Deng LL, Rubin EJ (2008) A mycobacterial enzyme essential for cell division synergizes with resuscitation-promoting factor. PLoS Pathog 4:e1000001
Jones G, Dyson P (2006) Evolution of transmembrane protein kinase implicated in coordinating remodeling of gram-positive peptidoglycan: inside versus outside. J Bacteriol 188:7470–7476
Kana BD, Mizrahi V (2010) Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling. FEMS Immunol Med Microbiol 58:39–50
Kana BD, Gordhan BG, Downing KJ, Sung N, Vostroktunova G, Machowski EE, Tsenova L, Young M, Kaprelyants A, Kaplan G, Mizrahi V (2008) The resuscitation-promoting factors of Mycobacterium tuberculosis are required for virulence and resuscitation from dormancy but are collectively dispensable for growth in vitro. Mol Microbiol 67:672–684
Kaprelyants AS, Kell DB (1993) Dormancy in stationary-phase cultures of Micrococcus luteus: flow cytometric analysis of starvation and resuscitation. Appl Environ Microbiol 59:3187–3196
Keep NH, Ward JM, Cohen-Gonsaud M, Henderson B (2006) Wake up! Peptidoglycan lysis and bacterial non-growth states. Trends Microbiol 14:271–276
Kühl PW (1994) Excess-substrate inhibition in enzymology and high-dose inhibition in pharmacology: a reinterpretation. Biochem J 298:171–180
Lee M, Hesek D, Shah IM, Oliver AG, Dworkin J, Mobashery S (2010) Synthetic peptidoglycan motifs for germination of bacterial spores. ChemBioChem 11:2525–2529
Mauck J, Chan L, Glaser L (1971) Turnover of the cell wall of gram-positive bacteria. J Biol Chem 246:1820–1827
Mir M, Asong J, Li X, Cardot J, Boons GJ, Husson RN (2011) The extracytoplasmic domain of the Mycobacterium tuberculosis Ser/Thr kinase PknB binds specific muropeptides and is required for PknB localization. PLoS Pathog 7:e1002182
Molle V, Kremer L (2010) Division and cell envelope regulation by Ser/Thr phosphorylation: Mycobacterium shows the way. Mol Microbiol 75:1064–1077
Mukamolova GV, Kaprelyants AS, Young DI, Young M, Kell DB (1998) A bacterial cytokine. Proc Natl Acad Sci USA 95:8916–8921
Mukamolova GV, Turapov OA, Young DI, Kaprelyants AS, Kell DB, Young M (2002) A family of autocrine growth factors in Mycobacterium tuberculosis. Mol Microbiol 46:623–635
Mukamolova GV, Murzin AG, Salina EG, Demina GR, Kell DB, Kaprelyants AS, Young M (2006) Muralytic activity of Micrococcus luteus Rpf and its relationship to physiological activity in promoting bacterial growth and resuscitation. Mol Microbiol 59:84–98
Nikitushkin VD, Demina GR, Kaprel’iantz AS (2011) Effect of secreted Rpf protein on intercellular contacts in Micrococcus luteus and Mycobacterium smegmatis cultures. Mikrobiologiia 80:155–161
Oliver JD (2010) Recent findings on the viable but nonculturable state in pathogenic bacteria. FEMS Microbiol Rev 34:415–425
Ruggiero A, Tizzano B, Pedone E, Pedone C, Wilmanns M, Berisio R (2009) Crystal structure of the resuscitation-promoting factor (DeltaDUF) RpfB from M. tuberculosis. J Mol Biol 385:153–162
Ruggiero A, Marasco D, Squeglia F, Soldini S, Pedone E, Pedone C, Berisio R (2010) Structure and functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation. Structure 18:1184–1190
Ruggiero A, Squeglia F, Marasco D, Marchetti R, Molinaro A, Berisio R (2011) X-ray structural studies of the entire extracellular region of the serine/threonine kinase PrkC from Staphylococcus aureus. Biochem J 435:33–41
Shah IM, Laaberki MH, Popham DL, Dworkin J (2008) A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments. Cell 135:486–496
Shleeva M, Mukamolova GV, Young M, Williams HD, Kaprelyants AS (2004) Formation of ‘non-culturable’ cells of Mycobacterium smegmatis in stationary phase in response to growth under suboptimal conditions and their Rpf-mediated resuscitation. Microbiology 150:1687–1697
Shleeva MO, Kudykina YK, Vostroknutova GN, Suzina NE, Mulyukin AL, Kaprelyants AS (2011) Dormant ovoid cells of Mycobacterium tuberculosis are formed in response to gradual external acidification. Tuberculosis 91:146–154
Telkov MV, Demina GR, Voloshin SA, Salina EG, Dudik TV, Stekhanova TN, Mukamolova GV, Kazaryan KA, Goncharenko AV, Young M, Kaprelyants AS (2006) Proteins of the Rpf (resuscitation promoting factor) family are peptidoglycan hydrolases. Biochemistry (Mosc) 71:414–422
Acknowledgments
ASK thanks Programme “Molecular and cellular Biology”, Russian Academy of Sciences; GRD and MOS thank the Federal Target Programme “Molecular and cellular Biology “Scientific and scientific-pedagogical personnel of innovative Russia”, contracts 14740.1056; 14.740.11.0246; 14.740.11.08.01 and RFBR, Grants (11-04-00713-a and 11-04-01440-a) for financial support. We also would like to thank Dr. Vadim Makarov for Rpf inhibitors.
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Nikitushkin, V.D., Demina, G.R., Shleeva, M.O. et al. Peptidoglycan fragments stimulate resuscitation of “non-culturable” mycobacteria. Antonie van Leeuwenhoek 103, 37–46 (2013). https://doi.org/10.1007/s10482-012-9784-1
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DOI: https://doi.org/10.1007/s10482-012-9784-1