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STR Typing and Available Kits

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DNA Fingerprinting: Advancements and Future Endeavors

Abstract

This chapter describes a time-scale development of short tandem repeats (STRs) and STR-based DNA technology used in forensic DNA analysis. The text describes the subsequent advancements in the development of the STR multiplex systems. This sequential development in STR-based multiplex systems has increased efficiency, sensitivity, and inhibitor tolerance with improved buffers. The development of different variants of STR-based multiplex systems utilizing different variants including autosomal, mini-, Y-, and X-STRs has increased the flexibility and ease of the forensic DNA analyst. With the availability of genetic analyzers, utilizing sixth dye has created new possibilities toward availability of expanded STR multiplex without affecting the requirement of input DNA for PCR. Rapid PCR and application of next-generation sequencing are also discussed along with the already validated capillary electrophoresis technology.

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References

  1. Ellegren H (2004) Microsatellites: simple sequences with complex evolution. Nat Rev Genet 5:435–445

    Article  CAS  Google Scholar 

  2. Britten RJ, Kohne DE (1968) Repeated sequences in DNA. Sci New Ser 161:529–540

    CAS  Google Scholar 

  3. Primose SB (1998) Principles of genome analysis: a guide to mapping and sequencing DNA from different organisms, 2nd edn. Blackwell Science, Malden

    Google Scholar 

  4. Chambers GK, MacAvoy ES (2000) Microsatellites: consensus and controversy. Comp Biochem Physiol B Biochem Mol Biol 126:455–476

    Article  CAS  Google Scholar 

  5. Tautz D (1993) Notes on the definition and nomenclature of tandemly repetitive DNA sequences. In: DJ Pena (ed) DNA fingerprinting: state of the science. Birkhauser Verlag, Basel, pp 21–28

    Chapter  Google Scholar 

  6. Edwards AL, Civitello A, Hammond HA, Caskey CT (1991) DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet 49:746–756

    CAS  PubMed  PubMed Central  Google Scholar 

  7. Jeffreys AJ, Wilson V, Thein SL (1985) Hypervariable minisatellite regions in human DNA. Nature 314:67–73

    Article  CAS  Google Scholar 

  8. Kimpton CP, Gill P, Walton A, Urquhart A, Millican ES, Adams M (1993) Automated DNA profiling employing multiplex amplification of short tandem repeat loci. PCR Methods Appl 3:13–22

    Article  CAS  Google Scholar 

  9. Roewer L (2013) DNA fingerprinting in forensics: past, present, future. Investig Genet 4:22

    Article  Google Scholar 

  10. Gill P, Fereday L, Morling N, Schneider PM (2006) The evolution of DNA databases – recommendations for new European STR loci. Forensic Sci Int 156:242–244

    Article  CAS  Google Scholar 

  11. Budowle B, Moretti TR, Niezgoda SJ, Brown BL (1998) CODIS and PCR-based short tandem repeat loci: law enforcement tools. Proceedings of the 2nd European Symposium Human Ident Madison, WI: Promega Corporation, pp 73–88

    Google Scholar 

  12. Butler JM (2011). Advanced topics in forensic DNA typing: methodology. 1st edition eBook ISBN: 9780123878236 hardcover ISBN: 9780123745132

    Google Scholar 

  13. Gill P, Urquhart A, Millican E, Oldroyd N, Watson S, Sparkes R, Kimpton CP (1996) A new method of STR interpretation using inferential logic -development of a criminal intelligence database. Int J Legal Med 109:14–22

    Article  CAS  Google Scholar 

  14. Kimpton C, Fisher D, Watson S, Adams M, Urquhart A, Lygo J, et al (1994). Evaluation of an automated DNA profiling system employing multiplex amplification of four tetrameric STR loci. Int J Legal Med, 106: 302–311

    Article  CAS  Google Scholar 

  15. Lygo JE, Johnson PE, Holdaway DJ, Woodroffe S, Whitaker JP, Clayton TM et al (1994) The validation of short tandem repeat (STR) loci for use in forensic casework. Int J Legal Med 107:77–89

    Article  CAS  Google Scholar 

  16. Gill P, Sparkes R, Kimpton C (1997) Development of guidelines to designate alleles using an STR multiplex system. Forensic Sci Int 89:185–197

    Article  CAS  Google Scholar 

  17. Kimpton CP, Oldroyd NJ, Watson SK, Frazier RR, Johnson PE, Millican ES, et al (1996). Validation of highly discriminating multiplex short tandem repeat amplification systems for individual identification. Electrophoresis, 17: 11283–93, 1283

    Article  CAS  Google Scholar 

  18. Sparkes R, Kimpton C, Gilbard S, Carne P, Andersen J, Oldroyd N, et al (1996a). The validation of a 7-locus multiplex STR test for use in forensic casework. (II), artefacts, casework studies and success rates. Int J Legal Med, 109: 195–204

    Google Scholar 

  19. Sparkes R, Kimpton C, Watson S, Oldroyd N, Clayton T, Barnett L, et al (1996b). The validation of a 7-locus multiplex STR test for use in forensic casework. (I). Mixtures, ageing, degradation and species studies. Int J Legal Med, 109: 186–194

    Google Scholar 

  20. Adrian L, Jennifer EL (2014) Forensic DNA profiling: state of the art. Res Rep Forensic Med Sci 4:25–36

    Google Scholar 

  21. Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, et al (2002). Validation of a 16-locus fluorescent multiplex system. J Forensic Sci, 47: 773–785

    Article  Google Scholar 

  22. Phillips C, Besada MG, Formoso LF, Magarinos MG, Santos C, Fondevila M, Ballard D, Court DS, Carracedo A, Lareu MV (2014) “New turns from old STaRs”: enhancing the capabilities of forensic short tandem repeat analysis. Electrophoresis 35:3173–3187

    Article  CAS  Google Scholar 

  23. Tan E, Turingan RS, Hogan C, Vasantgadkar S, Palombo L, Schumm JW, et al (2013). Fully integrated: fully automated generation of short tandem repeat profiles. Investig Genet, 4: 2041–2223

    Article  Google Scholar 

  24. Jovanovich S, Bogdan G, Belcinski R, Buscaino J, Burgi D, Butts ELR, et al (2015). Developmental validation of a fully integrated sample-to-profile rapid human identification system for processing single-source reference buccal samples. Forensic Sci Int Genet, 16: 181–194

    Article  CAS  Google Scholar 

  25. Hennessy LK, Mehendale N, Chear K, Jovanovich S, Williams S, Park C, et al (2014). Developmental validation of the GlobalFiler express kit a 24-marker STR assay, on the RapidHIT system. Forensic Sci Int Genet, 13: 247–258

    Article  CAS  Google Scholar 

  26. Salceda S, Barican A, Buscaino J, Goldman B, Klevenberg J, Kuhn M, Lehto D, Lin F, Nguyen P, Park C, Pearson F, Pittaro R, Salodkar S, Schueren R, Smith C, Troup C, Tsou D, Vangbo M, Wunderle J, King D (2017) Validation of a rapid DNA process with the RapidHIT ID system using GlobalFiler express chemistry, a platform optimized for decentralized testing environments. Forensic Sci Int Genet 28:21–34

    Article  CAS  Google Scholar 

  27. Moreno LI, Browna AL, Callaghan TF (2017) Internal validation of the DNAscan/ANDE rapid DNA. Analysis platform and its associated PowerPlex 16 high content DNA biochip cassette for use as an expert system with reference buccal swabs. Forensic Sci Int Genet 29:100–108

    Article  CAS  Google Scholar 

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Shrivastava, P., Dash, H.R., Kumawat, R.K., Srivastava, A., Imam, J. (2018). STR Typing and Available Kits. In: Dash, H., Shrivastava, P., Mohapatra, B., Das, S. (eds) DNA Fingerprinting: Advancements and Future Endeavors. Springer, Singapore. https://doi.org/10.1007/978-981-13-1583-1_4

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