Abstract
The genus Sobemovirus includes isometric, single-stranded positive sense RNA plant viruses that infect monocots and dicots. Sesbania mosaic virus (SeMV) is the only sobemovirus, which has been studied extensively in India. SeMV, which was identified in southern India, is highly stable and multiplies to high concentration causing mosaic symptoms on the leaves of Sesbania grandiflora. SeMV has served as a good model for understanding the molecular mechanism of assembly, replication and movement of sobemoviruses. The structure of the virion and other chimeric VLPs, along with biochemical investigations has resulted in the elucidation of the mechanism of assembly of SeMV. The complete genome sequence, structure and function of non-structural proteins have also been determined. The review presents a summary of all these findings. SeMV being non-toxic and biodegradable and of low immune response, has been shown as a good candidate for biomedical applications.
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References
Abraham A, Nataraj U, Karande AA, Gulati A, Murthy MRN, Murugesan S, Mukunda P, Savithri HS (2016) Intracellular delivery of antibodies by chimeric Sesbania mosaic virus (SeMV) virus like particles. Sci Rep 6:21803
Annamalai P, Rao AL (2005) Replication-independent expression of genome components and capsid protein of brome mosaic virus in planta: a functional role for viral replicase in RNA packaging. Virology 338(1):96–111
Bhuvaneshwari M, Subramanya HS, Gopinath K, Savithri HS, Nayudu MV, Murthy MRN (1995) Structure of Sesbania mosaic virus at 3Å resolution. Structure 3(10):1021–1030
Bruckman MA, Randolph LN, Van Meter A, Hern S, Shoffstall AJ, Steinmetz NF (2014) Biodistribution, pharmacokinetics and blood compatibility of native and PEGylated tobacco mosaic virus nano-rods and -spheres in mice. Virology 449:163–173
Caspar DLD, Klug A (1962) Physical principles in the construction of regular viruses. Cold Spring Harb Symp Quant Biol 27:1–24
Cavener DR, Ray SC (1991) Eukaryotic start and stop translation sites. Nucleic Acids Res 19(12):3185–3192
Chames P, Van Regenmortel M, Weiss E, Baty D (2009) Therapeutic antibodies: successes, limitations and hopes for the future. Br J Pharmacol 157:220–233
Chowdhury SR, Savithri HS (2011a) Interaction of Sesbania mosaic virus movement protein with the coat protein–implications for viral spread. FEBS J 278(2):257–272
Chowdhury SR, Savithri HS (2011b) Interaction of Sesbania Mosaic virus movement protein with VPg and P10: implication to specificity of genome recognition. PLoS One 6(1):e15609. doi:10.1371/journal.pone.0015609
Citovsky V, Kozlovsky SV, Lacroix B, Zaltsman A, Dafny-Yelin M, Vyas S, Tovkach A, Tzfira T (2007) Biological systems of the host cell involved in Agrobacterium infection. Cell Microbiol 9(1):9–20
Demler SA, de Zoeten GA (1991) The nucleotide sequence and luteovirus-like nature of RNA1 of an aphid non-transmissible strain of pea enation mosaic virus. J Virol 72:1819–1834
Gayathri P, Satheshkumar PS, Prasad K, Nair S, Savithri HS, Murthy MRN (2006) Crystal structure of the serine protease domain of Sesbania mosaic virus polyprotein and mutational analysis of residues forming the S1-binding pocket. Virology 346(2):440–451
Gopinath K, Sundareshan S, Bhuvaneswari M, Karande A, Murthy MRN, Nayudu MV, Savithri HS (1994) Primary structure of Sesbania mosaic virus coat protein: its implications to the assembly and architecture of the virus. Indian J Biochem Biophys 31(4):322–328
Govind K, Savithri HS (2010) Primer-independent initiation of RNA synthesis by SeMV recombinant RNA-dependent RNA polymerase. Virology 401(2):280–292
Govind K, Makinen K, Savithri HS (2012) Sesbania mosaic virus (SeMV) infectious clone: possible mechanism of 3′ and 5′ end repair and role of polyprotein processing in viral replication. PLoS One 7(2), e31190
Govind K, Bakshi A, Savithri HS (2014) Interaction of Sesbania mosaic virus (SeMV) RNA-dependent RNA polymerase (RdRp) with the p10 domain of polyprotein 2a and its implications in SeMV replication. FEBS Open Bio 4:362–369. doi:10.1016/j.fob.2014.03.009
Grishina IB, Woody RW (1994) Contributions of tryptophan side chains to the circular dichroism of globular proteins: exciton couplets and coupled oscillators. Faraday Discuss 99:245–262
Gulati A, Murthy A, Abraham A, Mohan K, Natraj U, Savithri HS, Murthy MRN (2016) Structural studies on chimeric Sesbania mosaic virus coat protein: revisiting SeMV assembly. Virology 489:34–43
Hull R (1977) The grouping of small spherical plant viruses with single RNA components. J Gen Virol 36:289–295
King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Elsevier Academic, San Diego. ISBN: 978-0-12-384684-6
Kozak M (1991) Structural features in eukaryotic mRNAs that modulate initiation of translation. J Biol Chem 266:19867–19870
Kushner DB, Lindenbach BD, Grdzelishvili VZ, Noueiry AO, Paul SM, Ahlquist P (2003) Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus. Proc Natl Acad Sci U S A 100(26):15764–15769
Lee LY, Gelvin SB (2008) T-DNA binary vectors and systems. Plant Physiol 146(2):325–332
Lin JY, Chen TC, Weng KF, Chang SC, Chen LL, Shih SR (2009) Viral and host proteins involved in picornavirus life cycle. J Biomed Sci 16:103
Lokesh GL, Gopinath K, Satheshkumar PS, Savithri HS (2001) Complete nucleotide sequence of Sesbania mosaic virus: a new virus species of the genus Sobemovirus. Arch Virol 146(2):209–223
Lokesh GL, Gowri TD, Satheshkumar PS, Murthy MRN, Savithri HS (2002) A molecular switch in the capsids protein controls the particle polymorphism in an icosahedral virus. Virology 292:211–223
Lutcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codon differs in plants and animals. EMBO J 6:43–48
Makinen K, Naess V, Tamm T, Truve E, Aaspollu A, Saarma M (1995) The putative replicase of the cocksfoot mottle sobemovirus is translated as a part of the polyprotein by −1 ribosomal frameshift. Virology 207:566–571
Mathews DH, Sabina J, Zuker M, Turner DH (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288(5):911–940
Miller WA, Dinesh-Kumar SP, Paul CP (1995) Luteovirus gene expression. CRC Rev Plant Sci 4:179–211
Nair S, Savithri HS (2010a) Processing of SeMV polyproteins revisited. Virology 396(1):106–117
Nair S, Savithri HS (2010b) Natively unfolded nucleic acid binding P8 domain of SeMV polyprotein 2a affects the novel ATPase activity of the preceding P10 domain. FEBS Lett 584(3):571–576
Nair S, Gayathri P, Murthy MRN, Savithri HS (2008) Stacking interactions of W271 and H275 of SeMV serine protease with W43 of natively unfolded VPg confer catalytic activity to protease. Virology 382(1):83–90
Nair S, Murthy MRN, Savithri HS (2012) Intrinsically disordered domains of Sesbania mosaic virus encoded proteins. In: Vladimir U, Sonia L (eds) Flexible viruses: structural disorder in viral proteins. Wiley, Hoboken., ISBN: 978–0–470-61831-8, pp 257–276
Pappachan A, Subashchandrabose C, Satheshkumar PS, Savithri HS, Murthy MRN (2008) Structure of recombinant capsids formed by the beta-annulus deletion mutant – rCP (Delta48-59) of Sesbania mosaic virus. Virology 375(1):190–196
Pappachan A, Chinnathambi S, Satheshkumar PS, Savithri HS, Murthy MRN (2009) A single point mutation disrupts the capsid assembly in Sesbania Mosaic Virus resulting in a stable isolated dimer. Virology 392(2):215–221
Parrot I, Huang PC, Khosla C (2002) Circular dichroism and nuclear magnetic resonance spectroscopic analysis of immunogenic gluten peptides and their analogs. J Biol Chem 277:45572–45578
Powers KW, Brown SC, Krishna VB, Wasdo SC, Moudgila BM, Roberts SM (2006) Characterization of nanoscale particles for toxicological evaluation. Toxicol Sci 90:296–303
Sangita V, Lokesh GL, Satheshkumar PS, Vijay CS, Saravanan V, Savithri HS, Murthy MRN (2004) T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly. J Mol Biol 342(3):987–999
Sangita V, Lokesh GL, Satheshkumar PS, Saravanan V, Vijay CS, Savithri HS, Murthy MRN (2005) Structural studies on recombinant T = 3 capsids of Sesbania mosaic virus coat protein mutants. Acta Crystallogr D Biol Crystallogr 61:1402–1405
Satheshkumar PS, Lokesh GL, Sangita V, Saravanan V, Vijay CS, Murthy MRN, Savithri HS (2004a) Role of metal ion-mediated interactions in the assembly and stability of Sesbania mosaic virus T=3 and T=1 capsids. J Mol Biol 342(3):1001–1014
Satheshkumar PS, Lokesh GL, Savithri HS (2004b) Polyprotein processing: cis and trans proteolytic activities of Sesbania mosaic virus serine protease. Virology 318(1):429–438
Satheshkumar PS, Gayathri P, Prasad K, Savithri HS (2005a) “Natively unfolded” VPg is essential for Sesbania mosaic virus serine protease activity. J Biol Chem 280(34):30291–30300
Satheshkumar PS, Lokesh GL, Murthy MRN, Savithri HS (2005b) The role of arginine-rich motif and beta-annulus in the assembly and stability of Sesbania mosaic virus capsids. J Mol Biol 353:447–458
Savithri HS, Murthy MRN (2010) Structure and assembly of Sesbania mosaic virus. Curr Sci 98(3):346–351
Scott AM, Wolchok JD, Old LJ (2012) Antibody therapy of cancer. Nat Rev Cancer 12:278–287
Shen M, Reitman ZJ, Zhao Y, Moustafa I, Wang Q, Arnold JJ, Pathak HB, Cameron CE (2008) Picornavirus genome replication. Identification of the surface of the poliovirus (PV) 3C dimer that interacts with PV 3Dpol during VPg uridylylation and construction of a structural model for the PV 3C2-3Dpol complex. J Biol Chem 283:875–888
Shirota Y, Luo H, Qin W, Kaneko S, Yamashita T, Kobayashi K, Murakami S (2002) Hepatitis C virus (HCV) NS5A binds RNA-dependent RNA polymerase (RdRp) NS5B and modulates RNA-dependent RNA polymerase activity. J Biol Chem 277(13):11149–11155
Sivakumaran K, Hacker DL (1998) The 105-kDa polyprotein of southern bean mosaic virus is translated by scanning ribosomes. Virology 246:34–44
Solunke BS, Eranna S, Nayudu MV (1983) Sesbania mosaic-a new virus disease. Indian Phytopathol 36:568–570
Subramanya HS, Gopinath K, Nayudu MV, Savithri HS, Murthy MRN (1993) Structure of Sesbania Mosaic Virus at 4·7 Å resolution and partial sequence of the coat protein. J Mol Biol 229(1):20–25
Tamm T, Truve E (2000a) Sobemoviruses. J Virol 74(14):6231–6241
Tamm T, Truve E (2000b) RNA-binding activities of cocksfoot mottle sobemovirus proteins. Virus Res 66:197–207
Tamm T, Suurvali J, Lucchesi J, Olspert A, Truve E (2009) Stem-loop structure of cocksfoot mottle virus RNA is indispensable for programmed-1 ribosomal frameshifting. Virus Res 146(1–2):73–80
Vidalain PO, Tangy F (2010) Virus-host protein interactions in RNA viruses. Microbes Infect 12(14–15):1134–1143
Vishnu Vardhan GP, Savithri HS, Murthy MRN, Hema M (2016) Biodistribution and toxicity evaluation of sesbania mosaic virus nanoparticles in mice. Arch Virol 161:2673–2681
Walters HJ (1969) Beetle transmission of plant viruses. Adv Virus Res 15:339–363
Woody RW (1994) Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins. Eur Biophys J 23(4):253–262
Acknowledgements
We thank late Prof. M.V. Nayudu for initiation of the work summarized in this review on SeMV and Prof. N. Appaji Rao for his encouragement. We acknowledge the contributions made by the following students, research associates and project assistants from HSS and MRN laboratories- Subramanya, Gopinath, Bhuvaneshwari, Lokesh, Satheshkumar, Sangita, Saravanan, Sundareshan, Vijay, Prasad, Gowri, Anju, Subashchandrabose, Smita, Gayathri, Soumya, Govind, Ambily, Usha, Amritha, Ashuthosh, Abhinandan, Kalyani, Sushmitha and Kavitha. The financial support from IISc, DST and DBT is gratefully acknowledged. A.B. and G.P.V.V. acknowledge UGC-CSIR and DST-INSPIRE respectively for their fellowships.
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Bakshi, A., Vishnu Vardhan, G.P., Hema, M., Murthy, M.R.N., Savithri, H.S. (2017). Structural and Functional Characterization of Sesbania Mosaic Virus. In: Mandal, B., Rao, G., Baranwal, V., Jain, R. (eds) A Century of Plant Virology in India. Springer, Singapore. https://doi.org/10.1007/978-981-10-5672-7_18
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