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Nutrient-Responsive Plant microRNAs

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Non Coding RNAs in Plants

Part of the book series: RNA Technologies ((RNATECHN))

Abstract

Being sessile, plants have to cope with many adverse environmental changes, including changing nutrient availability. Adequate availability of mineral macronutrients (e.g., N, P, K, S) and micronutrients (e.g., Cu, Fe, Zn) in the soil and their acquisition are vitally important for plant growth, development, and reproduction. Too little or too much of the nutrients negatively affects these traits and hence plant fitness and survival. Therefore, cellular concentrations of these nutrients have to be maintained at physiological levels, and adaptive physiological or developmental responses need to be initiated if necessary. Over the last few years, some nutrient-responsive microRNAs (miRs) have been discovered primarily in the model plant species Arabidopsis thaliana (A. thaliana), and several quickly evolved as critical components in scenarios such as regulation of plant P, S, or Cu homeostasis, or plant developmental adaptations to N availability. Several of these nutrient-responsive miRs also were found in phloem, i.e., the conductive vessels of plants, and a few were shown to act as systemic, long-distance signals. The presence of these miRs, their conserved nutrient response, and target genes in many higher plant species suggest deep conservation of the regulatory mechanisms. This chapter highlights and summarizes these discoveries.

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Abbreviations

AFB:

Auxin F-box receptor

APS:

ATP sulfurylase

ARF:

Auxin-responsive transcription factor

A. thaliana :

Arabidopsis thaliana

BAH:

Benzoic acid hypersensitive

CCS1:

Copper chaperone CCS1

COX5b:

Cytochrome c oxidase subunit V

C. reinhardtii :

Chlamydomonas reinhardtii

CSD:

Copper/zinc (Cu/Zn) superoxide dismutases

GFP:

Green fluorescent protein

GUS:

Beta glucuronidase

IPS1:

INDUCED BY PHOSPHATE STARVATION 1

LNA:

Locked nucleic acid

LR:

Lateral root

miR:

microRNA

miR*:

miR star strand

NF:

Nuclear factor

NLA:

Nitrogen limitation adaptation

PC:

Plastocyanin

PHO2:

E2 ubiquitin ligase PHO2

Pi:

(Inorganic) phosphate

PSI:

Phosphate starvation induced

qRT-PCR:

Quantitative real-time polymerase chain reaction

RACE:

Rapid amplification of cDNA ends

RNA:

Ribonucleic acid

ROS:

Reactive oxygen species

SPL:

SQUAMOSA promoter binding transcription factor

SPX:

Eucaryotic protein domain named after Syg1, Pho81 and XPR1

UBC:

Ubiquitin conjugase

UTR:

Untranslated region

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Authors and Affiliations

  1. Max-Planck Institute for Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany

    Wolf-Rüdiger Scheible, Bikram Datt Pant, Magdalena Musialak-Lange & Przemyslaw Nuc

  2. Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Poznan, Poland

    Przemyslaw Nuc

Authors
  1. Wolf-Rüdiger Scheible
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  2. Bikram Datt Pant
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  3. Magdalena Musialak-Lange
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  4. Przemyslaw Nuc
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Correspondence to Wolf-Rüdiger Scheible .

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Editors and Affiliations

  1. Institute of Chemistry/Biochemistry, Free University Berlin, Thielallee 63, Berlin, 14195, Berlin, Germany

    Volker A. Erdmann

  2. Inst. Bioorganic Chemistry, PAN Poznan, ul. Z. Noskowskiego 12/14, Poznan, 61-704, Poland

    Jan Barciszewski

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Scheible, WR., Pant, B.D., Musialak-Lange, M., Nuc, P. (2011). Nutrient-Responsive Plant microRNAs. In: Erdmann, V., Barciszewski, J. (eds) Non Coding RNAs in Plants. RNA Technologies. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-19454-2_20

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