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Extremophilic Patagonian Microorganisms Working in Biomining

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Biology and Biotechnology of Patagonian Microorganisms

Abstract

The microorganisms known as extremophiles have become a powerful tool in the field of biotechnology. Among them, acidophilic and thermophilic microorganisms capable of oxidizing iron(II) or sulfur compounds are very important in ore-processing operations as they are able to enhance the dissolution of sulfide ores. The aim of this chapter is to describe the physiological and phylogenetic characteristics of the main acidophilic species and communities found in geothermal and mining environments in Neuquén Province, Patagonia Argentina, and the advances done by our research group in their application to biomining and bioremediation of heavy metals. Additionally, the chapter includes the description of a novel thermoacidophilic archaeon from the genus Acidianus (Acidianus copahuensis) autochthonous of the Copahue geothermal area isolated and characterized by our research group.

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References

  • Accorinti J, Squadrone M, Wenzel M, Perez A (1991) Valoración de las propiedades antimicrobianas del agua del volcán Copahue Neuquén Argentina. Arch Argent Dermatol 41:229–237

    Google Scholar 

  • Agusto M, Tassi F, Caselli AT, Vaselli O, Rouwet D, Capaccioni B, Caliro S, Chiodini G, Darrah T (2013) Gas geochemistry of the magmatic-hydrothermal fluid reservoir in the Copahue–Caviahue Volcanic Complex (Argentina). J Volcanol Geoth Res 257:44–56

    Article  CAS  Google Scholar 

  • Auernik KS, Kelly RM (2008) Identification of components of electron transport chains in the extremely thermoacidophilic crenarchaeon Metallosphaera sedula through iron and sulfur compound oxidation transcriptomes. Appl Environ Microbiol 74:7723–7732

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Caselli AT, Dapeña C, Agusto M, Delgado Huertas A (2006) Geothermal Copahue volcano system, Argentina. New stable isotope and geochemical data. In: Proceedings of the Vth South American Symposium on Isotope Geology, Uruguay, pp 332–336

    Google Scholar 

  • Chiacchiarini P, Lavalle L, Giaveno A, Donati E (2009) Acidophilic microorganisms from geothermal Copahue Volcano system. Assessment of biotechnological applications. Adv Mater Res 71-73:87–91

    Article  CAS  Google Scholar 

  • Chiacchiarini P, Lavalle L, Giaveno A, Donati E (2010) First assessment of acidophilic microorganisms from geothermal Copahue-Caviahue system. Hydrometallurgy 104:334–341

    Article  CAS  Google Scholar 

  • Delpino D, Bermúdez A (1995) Eruptions of pyroclastic sulphur at crater lake of Copahue Volcano, Argentina. In: International Union of Geodesy and Geophysics. XXI General Assembly, Abstracts, p 128

    Google Scholar 

  • Du Plessis CA, Batty JD, Dew DW (2007) Commercial applications of thermophile bioleaching. In: Rawlings DE, Johnson DB (eds) Biomining. Springer, Berlin, pp 57–80

    Chapter  Google Scholar 

  • Esteve-Zarzoso B, Belloch C, Uruburu F, Querol A (1999) Identification of yeast by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacer. Int J Syst Bacteriol 49:329–337

    Article  CAS  PubMed  Google Scholar 

  • Fuchs T, Huber H, Burggraf S, Stetter KO (1996) 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalens comb. nov. Syst Appl Microbiol 1:1956–1960

    Google Scholar 

  • Gammons CH, Wood SA, Pedrozo F, Varekamp JC, Nelson B, Shope CL, Baffico G (2005) Hydrogeochemistry and rare earth element behavior in a volcanically acidified watershed in Patagonia, Argentina. Chem Geol 222:249–267

    Article  CAS  Google Scholar 

  • Giaveno MA (2010) Biolixiación y biooxidación de minerales utilizando cepas nativas con capacidad termofílica Tesis de doctorado, Doctor en Cs. Exactas, área Química; Cs. Exactas UNLP. Available on line in http://hdl.handle.net/10915/2699

  • Giaveno MA, Donati E (2007) Bioleaching of a zinc sulfide ore by thermophilic consortia isolated from Copahue volcano. Adv Mater Res 20-21:79–82

    Article  Google Scholar 

  • Giaveno MA, Lavalle L, Chiacchiarini P, Donati E, Sand W (2007a). Airlift reactors: characterization and applications in biohydrometallurgy. In: Donati ER, Sand W (eds) Microbial processing of metal sulfides. Springer, Dordrecht, pp 169–191

    Google Scholar 

  • Giaveno A, Lavalle L, Chiacchiarini P, Donati E (2007b) Bioleaching of zinc from low-grade complex sulfide ores in an airlift by isolated Leptospirillum ferrooxidans. Hydrometallurgy 89:117–126

    Google Scholar 

  • Giaveno A, Chiacchiarini P, Cordero C, Lavalle L, Huergo J, Donati E (2009a) Oxidative capacity of native strains from Copahue geothermal system in the pretreatment of a gold sulfide ore. Adv Mater Res 71-73:473–476

    Google Scholar 

  • Giaveno MA, Huergo J, Lavalle L, Sand W, Donati E (2009b) Molecular and morphological characterization of cultures from the extreme environmental area of Copahue Volcano-Argentina. Adv Mater Res 71-73:93–96

    Google Scholar 

  • Giaveno MA, Pettinari G, González Toril E, Aguilera A, Urbieta MS, Donati E (2011) The influence of two thermophilic consortia on troilite (FeS) dissolution. Hydrometallurgy 106:19–25

    Article  CAS  Google Scholar 

  • Giaveno MA, Urbieta MS, Ulloa JR, Toril EG, Donati ER (2013) Physiologic versatility and growth flexibility as the main characteristics of a novel thermoacidophilic Acidianus strain isolated from Copahue geothermal area in Argentina. Microb Ecol 65:336–346

    Article  CAS  PubMed  Google Scholar 

  • He Z, Zhong H, Li Y (2004) Acidianus tengchongensis sp. nov., a new species of acidothermophilic archaeon isolated from an acidothermal spring. Curr Microbiol 48:159–163

    Article  CAS  PubMed  Google Scholar 

  • Johnson DB (1995) Selective solid media for isolation and enumerating acidophilic bacteria. J Microbiol Methods 23:205–218

    Article  Google Scholar 

  • Juárez AB, Vélez CG (1993) Sobre la presencia de Chlorellakessleri (Chlorococcales, Chlorophyceae) en aguas del Complejo Termal Copahue (prov. de Neuquen, Argentina). Bol Soc Argent Bot 29(1/2):105–107

    Google Scholar 

  • Kelly DP, Wood AP (2000) Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov. Int J Syst Evol Microbiol 50:511–516

    Article  PubMed  Google Scholar 

  • Kletzin A (2008) Oxidation of sulphur and inorganic sulphur compounds in Acidianus ambivalens. In: Dahl C, Fredrich GC (eds) Microbial sulfur metabolism. Springer, Berlin, pp 184–200

    Chapter  Google Scholar 

  • Kurtzmann CP, Fell JW (1998) The yeasts: a taxonomic study. Elsevier, Amsterdam

    Google Scholar 

  • Lavalle L, Chiacchiarini P, Pogliani C, Donati E (2005) Isolation and characterization of acidophilic bacteria from Patagonia Argentina. Process Biochem 40:1095–1099

    Article  CAS  Google Scholar 

  • Lavalle L, Portillo M, Chiacchiarini P, Donati E (2007) Heavy metal tolerance and copper uptake in yeast isolated from Patagonia Argentina. Adv Mater Res 20:639–642

    Article  Google Scholar 

  • Lavalle L, Giaveno A, Pogliani C, Donati E (2008) Bioleaching of a polymetallic sulfide mineral by native strains of Leptospirillum ferrooxidans from Patagonia Argentina. Process Biochem 43:445–450

    Article  CAS  Google Scholar 

  • Lavalle A, Curia L, Lavalle L, Giaveno A, Donati E (2012) Artificial neural network to predict the growth of Leptospirillum ferrooxidans in 9K defined medium. Int J Eng Res Appl 2:1406–1416

    Google Scholar 

  • Leanza H, Arregui C, Carbone O, Danieli J, Vallés J Eds (2011) Relatorio del XVIII Congreso Geológico Argentino. Geología y Recursos Naturales de la Provincia del Neuquén. Buenos Aires. Asociación Geológica Argentina ISBN 978-987-22403-3-2

    Google Scholar 

  • Liang CL, Xia JL, Nie ZY, Yang Y, Ma CY (2012) Effect of sodium chloride on sulfur speciation of chalcopyrite bioleached by the extreme thermophile Acidianus manzaensis. Bioresour Technol 110:462–467

    Article  CAS  Google Scholar 

  • Lin CC, Casida LE Jr (1984) Gerlerite as a gelling agent in media for the growth of thermophilic microorganisms. Appl Environ Microbiol 47:427–429

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lindstrom BE, Sehlin HM (1989) High efficiency of plating of the thermophilic sulfur-dependent archaebacterium Sulfolobus acidocaldarius. Appl Environ Microbiol 55:3020–3021

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lutton E, Schellevis R, Shanmuganathan A (2013) Culture-dependent methods increase observed soil bacterial diversity from Marcellus shale temperate forest in Pennsylvania. J Stud Res 2:9–16

    Google Scholar 

  • Mas GR, Mas LC, Bengochea L (1996) Hydrothermal surface alteration in the Copahue Geothermal field (Argentina). Proceedings of the Twenty First Workshop Geothermal Reservoir Engineering, January 22-24, 1996. SGP-TR-151-34. Stanford University, California, 241–246

    Google Scholar 

  • Monasterio A, Valles J, Pettinari G, Setti M, López-Galindo A, Baschini M (2015) Maduración de peloides en ambiente natural: experiencia en las Termas de Copahue. In Balnea10 IV CICAP BOI; Maraver F, Vela L, Ankli W, Eds. 255-264. ISBN 978-84-606-9368-0

    Google Scholar 

  • Nodlovu S, Simate G, Mchibwa K, Giaveno MA (2014) Characterization of nanoprecipitates formed from the forced hydrolysis of bioleach liquors under different pH conditions. J Ind Eng Chem 20:3578–3583

    Article  Google Scholar 

  • Pedrozo F, Kelly L, Diaz M, Temporetti P, Baffico G, Kringel R, Friese K, Mages M, Geller W, Woelfl S (2001) First results on the water chemistry, algae and trophic status of an Andean acidic lake system of volcanic origin in Patagonia (Lake Caviahue). Hydrobiologia 452:129–137

    Article  CAS  Google Scholar 

  • Pedrozo FL, Temporetti PF, Beamud G, Diaz MM (2008) Volcanic nutrient inputs and trophic state of Lake Caviahue, Patagonia, Argentina. J Volcanol Geoth Res 178:205–212

    Article  CAS  Google Scholar 

  • Petersen J (2010) Modelling of bioleach processes: connection between science and engineering. Hydrometallurgy 104:404–409

    Article  CAS  Google Scholar 

  • Plumb J, Haddad CM, Gibson JA, Franzmann PD (2007) Acidianus sulfidivorans sp. nov., an extremely acidophilic, thermophilic archaeon isolated from a solfatara on Lihir Island, Papua New Guinea, and emendation of the genus description. Int J Syst Evol Microbiol 57:1418–1423

    Article  PubMed  Google Scholar 

  • Rawlings DE, Johnson BD (eds) (2007) Biomining. Springer, Berlin

    Google Scholar 

  • Russo G, Libkind D, Sampaio J, van Broock M (2008) Yeast diversity in the acidic Rio Agrio-Lake Caviahue volcanic environment (Patagonia, Argentina). FEMS Microbiol Ecol 65:415–424

    Article  CAS  PubMed  Google Scholar 

  • Schippers A (2007) Microorganisms involved in bioleaching and nucleic acid-based molecular methods for their identification and quantification. In: Microbial Processing of Metal Sulfides. E. Donati and W. Sand Eds. Springer.The Netherlands. 3–33

    Google Scholar 

  • Segerer A, Neuner AM, Kristjansson JK, Stetter K (1986) Acidianus infernus gen. nov. sp. nov. and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria. Int J Syst Bacteriol 36:559–564

    Article  Google Scholar 

  • Stewart EJ (2012) Growing unculturable bacteria. J Bacteriol 194:4151–4160

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Temporetti P, Snodgrass K, Pedrozo F (2013) Dynamics of phosphorus in sediments of a naturally acidic lake. Int J Sediment Res Issue 1:90–102

    Google Scholar 

  • Ulloa R, Giaveno A, Donati E (2012) Adaptation of acidophilic microbial community from Andacollo to be used in biomining processes. XI Jornadas Argentinas de Tratamiento de Minerales, Neuquén, Argentina 301-306. ISBN978-987-604-311-3

    Google Scholar 

  • Urbieta MS, González Toril E, Aguilera A, Giaveno MA, Donati E (2012) First prokaryotic biodiversity assessment using molecular techniques of an acidic river in Neuquén, Argentina. Microb Ecol 64:91–104

    Article  PubMed  Google Scholar 

  • Urbieta MS, Toril EG, Giaveno MA, Bazan AA, Donati ER (2014a) Archaeal and bacterial diversity in five different hydrothermal ponds in the Copahue region in Argentina. Syst Appl Microbiol 37:429–441

    Google Scholar 

  • Urbieta MS, Rascovan N, Castro C (2014b) Draft genome sequence of the novel thermoacidophilic archaeon acidianus copahuensis strain ALE1, isolated from the copahue volcanic area in Neuquén, Argentina. Genome Announc 2(3):e00259–14. doi:10.1128/genomeA.00259-14

  • Urbieta MS, González Toril E, Bazán ÁA, Giaveno MA, Donati E (2015a) Comparison of the microbial communities of hot springs waters and the microbial biofilms in the acidic geothermal area of Copahue (Neuquén, Argentina). Extremophiles 19:437–450

    Google Scholar 

  • Urbieta MS, Porati GW, Segretín AB, González Toril E, Giaveno MA, Donati ER (2015b) Copahue geothermal system: a volcanic environment with rich extreme prokaryotic biodiversity. Microorganisms 3:344–363

    Google Scholar 

  • Vallés JM, Baschini MT, Pettinari GR, García N (2004) Characterization of Muds and Waters of the Copahue Geothermal Field, Neuquen Province, Patagonia Argentina. 8th International Congress on Applied Mineralogy 1, 507-510. ISBN 85-98656-01-1, www.icam2004.org

  • Varekamp JC (2004) Copahue volcano: a modern terrestrial analog for the opportunity landing site? Eos 85(41):401–407

    Article  Google Scholar 

  • Varekamp J, Maarten deMoor J, Merrill M, Colvin A, Goss A, Vroon P, Hilton D (2006) Geochemistry and isotopic characteristics of the Caviahue-Copahue volcanic complex, Province of Neuquén, Argentina. Geol Soc Am Spec Pap 407:317–342

    Google Scholar 

  • Varekamp JC, Ouimette AP, Herman SW, Flynn KS, Bermudez A, Delpino D (2009) Naturally acid waters from Copahue volcano, Argentina. Appl Geochem 24:208–220

    Article  CAS  Google Scholar 

  • Vartoukian SR, Palmer RM, Wade WG (2010) Strategies for culture of ‘unculturable’ bacteria. FEMS Microbiol Lett 309:1–7

    CAS  PubMed  Google Scholar 

  • Vélez ML, Euillades P, Caselli A, Blanco M, Martínez Díaz J (2011) Deformation of copahue volcano: inversion of InSAR data using a genetic algorithm. J Volcanol Geoth Res 202:117–126

    Article  Google Scholar 

  • Volesky B (2003) Sorption and biosorption. Sorbex, Montreal

    Google Scholar 

  • Wang J, Chen C (2009) Biosorbents for heavy metals removal and their future. Biotechnol Adv 27:195–226

    Article  PubMed  Google Scholar 

  • Watling HR (2015) Review of biohydrometallurgical metals extraction from polymetallic mineral resources. Minerals 5:1–60

    Article  Google Scholar 

  • Wendt-Potthoff K, Koschorreck M (2002) Functional groups and activities of bacteria in a highly acidic volcanic mountain stream and lake in Patagonia, Argentina. Microb Ecol 43:92–106

    Article  CAS  PubMed  Google Scholar 

  • Yoshida N, Nakasato M, Ohmura N, Ando A, Saiki H, Ishii M, Igarashi Y (2006) Acidianus manzaensis sp.nov., a novel thermoacidophilic archaeon growing autotrophically by the oxidation of H2 with the reduction of Fe3+. Curr Microbiol 53:406–411

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

Our research work has been supported by Universidad Nacional del Comahue and CONICET grants. The authors are very grateful to Dr. Ana Monasterio from EPROTEN (Ente Provincial de Termas del Neuquén) for getting the permission to work in the CCG area and the management and technical staff of CORMINE (Corporación Minera del Neuquén S.E.P.) for their invaluable help. The authors thank Professors and staff from Asentamiento Universitario Zapala (Fac. Ingeniería, UNComahue) for assistance during sampling and conditioning of the mineral samples.

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Correspondence to Alejandra Giaveno .

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Chiacchiarini, P., Lavalle, L., Urbieta, M.S., Ulloa, R., Donati, E., Giaveno, A. (2016). Extremophilic Patagonian Microorganisms Working in Biomining. In: Olivera, N., Libkind, D., Donati, E. (eds) Biology and Biotechnology of Patagonian Microorganisms. Springer, Cham. https://doi.org/10.1007/978-3-319-42801-7_12

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