In this chapter, we present the model and simulation of light-driven chlorophyll fluorescence induction in 10–20 min dark-adapted intact leaves and thylakoids. The algorithm for it has been derived from analyses of fluorescence kinetics upon excitation with single- (STF), twin- (TTF) and repetitive STF excitations. These analyses have led to definition and formulation of rate equations that describe the sequence of electron transfer steps associated with the oxidation of the oxygen evolving complex (OEC) and the reduction of the primary plastoquinone acceptor QA of photosystem II (PS II) in multi turnover excitation (MTF). The model considers heterogeneity in reaction centers (RCs) associated with the S-states of the OEC and incorporates the presence of a 20–35% fraction of QB nonreducing RCs that probably is identical with the S0 fraction. The fluorescence induction algorithm (FIA) considers a photochemical O—J—D, a photo-electrochemical J—I and an I—P component (phase), which probably is associated with a photoelectric interaction between PS I and PS II. The photochemical phase incorporates the kinetics associated with the double reduction of the acceptor pair of pheophytin (Phe) and plastoquinone QA[PheQA] in QBnonreducing RCs and the associated doubling of the variable fluorescence, in agreement with the three-state trapping model (TSTM) of PS II. Application of and results with the algorithm are illustrated for a variety of MTF-induced OJDIP curves, measured in dark-adapted leaves and thylakoids under various light and dark conditions.
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References
Antal T and Rubin A (2008) In vivo analysis of chlorophyll a fluorescence induction. Photosynth Res 96: 217–226
Belyaeva NT, Paschenko VZ, Renger G, Riznichenko G Yu and Rubin AB (2006) Application of photosystem II model for analysis of fluorescence induction curves in the 100 ns to 10 s time domain after excitation with a saturating light pulse. Biophysics (translated from Biofizika) 51 (6): 976–990
Belyaeva NE, Schmitt F-J, Steffen, R, Paschenko VZ, Riznichenko G Yu, Chemeris YuK, Renger G, and Rubin AB (2008) PS II model-based simulations of single turnover flash-induced transients of fluorescence yield monitored within the time domain of 100 ns—10 s on dark-adapted Chlorella pyrenoidosa cells Photosynth Res 98: 105–119
Bernhardt K and Trissl H-W (1999) Theories for kinetics and yields of fluorescence and photochemistry: how, if at all, can different models of antenna organization be distinguished experimentally? Biochim Biophys Acta 1409: 125–142
Boisvert S, Joly D and Carpentier R (2006) Quantitative analysis of the experimental O-J-I-P chlorophyll induction kinetics. Apparent activation energy and origin of each kinetic step. FEBS Lett 273: 4770–4777
Bowes JM and Crofts AR (1980) Binary oscillations in the rate of reoxidation of the primary acceptor of photosystem II. Biochim Biophys Acta 590: 373–384
Bukhov NG, Govindachary S, Egorova EA, Joly D and Carpentier R (2003) N, N, N′, N′-tetramethyl-p-phenylenediamine initiates the appearance of a well resolved I-peak in the kinetics of chlorophyll fluorescence rise in isolated thylakoids. Biochim Biophys Acta 1607: 91–96
Bulychev AA and Vredenberg WJ (2001) Modulation of photosystem II chlorophyll fluorescence by electrogenic events generated by photosystem I. Bioelectrochem 54: 157–168
Butler WL (1972) On the primary nature of fluorescence yield changes associated with photosynthesis. Proc Natl Acad Sci USA 69: 3420–3422
Christen G, Reifarth F and Renger G (1998) On the origin of the‘35-μs kinetics’ of P+680 reduction in photosystem II with an intact water oxidizing complex. FEBS Lett 419: 49–52
Chylla RA, Garab G and Whitmarsh J (1987) Evidence for slow turnover in a fraction of photosystem II complexes in thylakoid membranes. Biochim Biophys Acta 894: 562–571
Crofts AR (2005) The Q-cycle—a personal perspective. In: Govindjee, J.T Beatty, H. Gest and J.F. Allen (eds), Discoveries in Photosynthesis. Advances in Photosynthesis and Respiration, pp 47–499, Vol. 20, Springer, Dordrecht
Dau H (1994) Molecular mechanisms and quantitative models of variable photosystem II fluorescence. Photochem Photobiol 60: 1–23
Duysens LNM and Sweers HE (1963) Mechanisms of the two photochemical reactions in algae as studied by means of fluorescence. In: Japanese Society of Plant Physiologists. Studies on Microalgae and Photosynthetic Bacteria, pp 353–372. University of Tokyo Press, Tokyo
Forbush B and Kok B (1968) Reaction between primary and secondary electron acceptors of photosystem II of photosynthesis. Biochim Biophys Acta, 162: 243–253
Govindjee (1995) Sixty-three years since Kautsky: chlorophyll a fluorescence. Aust J Plant Physiol 22: 131–160
Govindjee (2004) Chlorophyll a fluorescence: a bit of basics and history. In: Papageorgiou, GC, Govindjee (eds) Chlorophyll a fluorescence: A signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol 19, pp 1–42, Springer, Dordrecht
Hiraki M, Van Rensen JJS, Vredenberg WJ and Wakabayashi K (2003) Characterization of the alterations of the chlorophyll a fluorescence induction curve after addition of pho-tosystem II inhibiting herbicides. Photosynth Res 78: 35– 46
Hiraki M, Vredenberg WJ, Van Rensen JJS and Wakabayashi K (2004) A modified fluorometric method to quantify the concentration effect (pI50) of photosystem II-inhibiting herbicides. Pesticide Biochem Physiol 80: 183–191
Jablonsky J and Lazar D (2008) Evidence for intermediate S-states as initial phase in the process of oxygen-evolving complex oxidation. Biophys J 94: 2725–2736
Joliot P and Joliot A (1964) Etude cinetique de la reaction photochimique liberant l'oxygene au cours de la photo-synthèse CR Acad Sci Paris 258: 4622–4625
Joliot P and Joliot A (1977) Evidence for a double hit process in photosystem II based on fluorescence studies. Biochim Biophys Acta 462: 559–574
Joly D and Carpentier R (2007) The oxidation/reduction kinetics in the plastoquinone pool controls the appearance of the I-peak in the O-J-I-P chlorophyll fluorescence rise: Effects of various electron acceptors. J Photochem Photo-biol B 88: 43–50
Ke B (2001) Photosynthesis photobiochemistry and photo-biophysics. In: Govindjee (ed), Advances in Photosynthesis (and Respiration), Vol. 10, Kluwer (now Springer), Dordrecht
Klimov VV and Krasnovskii AA (1981) Participation of pheophytin in the primary processes of electron transfer at the reaction centers of photosystem II. Biophysics 27: 186–198
Koblizek M, Kaftan D and Nedbal L (2001) On the relationship between the non-photochemical quenching of the chlorophyll fluorescence and the photosystem II light harvesting efficiency. A repetitive flash fluorescence study. Photosynth Res 68: 141–152
Kolber Z, Prášil O and Falkowski P (1998) Measurements of variable chlorophyll fluorescence using fast repetition rate technique. I. Defining methodology and experimental protocols. Biochim Biophys Acta 1367: 88–106
Kramer DM, DiMarco G and Loreto F (1995) Contribution of plastoquinone quenching to saturation pulse-induced rise of chlorophyll fluorescence in leaves. In: Mathis P (ed), Photosynthesis: From Light to Biosphere, Vol. I, pp 147–150, Kluwer, Dordrecht, The Netherlands
Kurreck J, Schödel R and Renger G (2000) Investigation of the plastoquinone pool size and fluorescence quenching in thylakoid membranes and Photosystem II (PSII) membrane fragments. Photosynth Res 63: 171–182
Lavergne J and Leci E (1993) Properties of inactive photo-system II centers. Photosynth Res 35: 323–343
Lavergne J, Trissl H-W (1995) Theory of fluorescence induction in photosystem II: Derivation of analytical expressions in a model including exciton-radical-pair equilibrium and restricted energy transfer between photo-synthetic units. Biophys J 68: 2474–2492
Lazár D (1999) Chlorophyll a fluorescence induction. Biochim Biophys Acta 1412: 1–28
Lazár D (2006) The polyphasic chlorophyll a fluorescence rise measured under high intensity of exciting light. Funct Plant Biol 33: 9–30
Mauzerall D (1972) Light induced fluorescence changes in Chlorella, and the primary photoreactions for the production of oxygen. Proc Natl Acad Sci USA 69: 1358– 1362
Melis A (1985) Functional properties of Photosystem IIβ in spinach chloroplasts. Biochim Biophys Acta 808: 334–342
Papageorgiou GC and Govindjee (eds) (2004) Chlorophyll a fluorescence: A signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19, Springer, Dordrecht
Papageorgiou GC, Tsimilli-Michael M and Stamatakis K (2007) The fast and slow kinetics of chlorophyll a fluorescence induction in plants, algae and cyanobacteria: a viewpoint. Photosynth Res 94: 275–290
Pospìšil P and Dau H (2002) Valinomycin sensitivity proves that light-induced thylakoid voltages result in millisecond phase of chlorophyll fluorescence transients. Biochim Biophys Acta 1554: 94–100
Reifarth F, Christen G and Renger G (1997) Fluorimetric equipment for monitoring P+680 reduction in PSII preparations and green plants. Photosynth Res 51: 231–242
Roberts AG, Gregor W, Britt RD and Kramer DM (2003) Acceptor and donor-side interactions of phenolic inhibitors of Photosystem II. Biochim Biophys Acta 1604: 23–32
Samson G and Bruce D (1996) Origin of the low yield of chlorophyll fluorescence induced by single turnover flash in spinach thylakoids. Biochim Biophys Acta 1276: 147–153
Samson G, Prášil O and Yaakoubd B (1999) Photochemical and thermal phases of chlorophyll a fluorescence. Photo-synthetica 37: 163–182
Schansker G, Toth SZ and Strasser RJ (2006) Dark recovery of the Chl a fluorescence transient (OJIP) after light adaptation: The qT-component of non-photochemical quenching is related to an activated photosystem I acceptor side. Biochim Biophys Acta 1757: 787–797
Schreiber U (2002) Assesment of maximal fluorescence yield: Donor-side dependent quenching and QB-quenching. In: Van Kooten O and J Snel (eds) Plant Spectrofluotometry: Applications and Basic Research, pp 23–47. Rozenberg, Amsterdam
Schreiber U and Krieger A (1996) Hypothesis: Two fundamentally different types of variable chlorophyll fluorescence in vivo. FEBS Lett 397: 131–135
Shinkarev VP (2004) Photosystem II: Oxygen evolution and chlorophyll a fluorescence induced by multiple flashes In: Papageorgiou GC and Govindjee (eds) Chlorophyll a fluorescence: A signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19, pp 197–229. Springer, Dordrecht
Shinkarev VP and Govindjee (1993) Insight into the relationship of chlorophyll fluorescence yield to the concentration of its natural quenchers in oxygenic photosynthesis. Proc Natl Acad Sci USA 90: 7466–7469
Steffen R (2003) Time-resolved spectroscopic investigation pf photosystem II. Ph.D. thesis. Technical University, Berlin
Steffen R, Christen G and Renger G (2001) Time-resolved monitoring of flash-induced changes of fluorescence quantum yield and decay of delayed light emission in oxygen-evolving photosynthetic organisms. Biochemistry 40: 173–180
Steffen R, Eckert H-J, Kelly AA, Dörmann PG and Renger G (2005) Investigations on the reaction pattern of pho-tosystem II in leaves from Arabidopsis thaliana by time-resolved fluorometric analysis. Biochemistry 44: 3123–3132
Stirbet AD, Govindjee, Strasser BJ and Strasser, RJ (1998) Chlorophyll a fluorescence induction in higher plants: Modeling and numerical simulation. J Theor Biol 193: 131–151
Strasser BJ and Strasser RJ. (1995) Measurement of fast fluorescence transients to address environmental questions; the JIP test. In: Mathis P (ed) Photosynthesis: From Light to Biosphere, pp 977–980, Kluwer, Dordrecht
Strasser RJ (1978) The grouping model of plant photosynthesis. In: Akoyunoglou G (ed) Chloroplast Development, pp 513–524. Elsevier/North Holland, Amsterdam
Strasser RJ, Srivastava A and Govindjee (1995) Polypha-sic chlorophyll a fluorescence transient in plants and cyanobacteria. Photochem Photobiol 61: 32–42
Strasser RJ, Tsimilli-Michael M and Srivastava, A (2004) Analysis of the fluorescence transient. In: Papageorgiou, G.C., Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis. Advances in Photosynthesis and Respiration, Vol. 19, pp 321–362. Springer, Dordrecht
Trissl H-W (2002) Theory of fluorescence induction: an introduction. http://www.biologie.uni-osnabrueck.de/ biophysik/ Trissl/teaching/teaching.html
Trissl H-W and Lavergne J (1995) Fluorescence induction from photosystem II: analytical equations for the yields of photochemistry and fluorescence derived from analysis of a model including exciton-radical pair equilibrium and restricted energy transfer between photosynthetic units. Aust J Plant Physiol 22: 183–193
Urban O, Trtílek M, Feild T and Nedbal L (1999) Single-turnover flashes to saturate the QA reduction in a leaf were generated by the light-emitting diodes of a double modulation kinetic fluorometer. Photosynthetica 37: 201–207
Vasilév S and Bruce D (1998) Nonphotochemical quenching of excitation energy in photosystem II. A picosecond time-resolved study of the low yield of chlorophyll a fluorescence induced by single-turnover flash in isolated spinach thylakoids. Biochemistry 37: 11046–11054
Vermaas WFJ, Renger G and Dohnt G (1984) The reduction of the oxygen-evolving system in chloroplasts by thylakoid components. Biochim Biophys Acta 764: 194–202
Vredenberg WJ (2000) A three-state model for energy trapping and chlorophyll fluorescence in photosystem II incorporating radical pair recombination. Biophys J 79: 25–38
Vredenberg WJ (2004) System analysis of photoelectro-chemical control of chlorophyll fluorescence in terms of trapping models of Photosystem II: a challenging view. In: Papageorgiou GC and Govindjee (eds) Chlorophyll a fluorescence: a signature of photosynthesis, Advances in Photosynthesis and Respiration, Vol. 19, pp 133–172. Springer, Dordrecht
Vredenberg WJ (2008a) Analysis of initial chlorophyll fuorescence induction kinetics in chloroplasts in terms of rate constants of donor side quenching release and electron trapping in photosystem II. Photosynth Res 96: 83–97
Vredenberg WJ (2008b) Algorithm for analysis of OJDIP fluoresecnce induction curves in terms of photo- and electrochemical events in photosystems of plant cells. Derivation and application. J Photochem Photobiol B 91: 58–65
Vredenberg WJ (2008c) Kinetic Models of Photosystem II should incorporate a Role for QB-nonreducing Reaction Centers. Biophys J 95: 3113–3114
Vredenberg WJ and Duysens LNM (1963) Transfer and trapping of excitation energy from bacteriochlorophyll to a reaction center during bacterial photosynthesis. Nature 197: 355–357
Vredenberg WJ, Snel JFH and Dassen JHA (1998) A sizeable increase in the electric conductance of the thylakoid lumen as an early event during reaction center and Q cycle turnover Photosynth Res 58: 111–121
Vredenberg WJ, Rodrigues GC and Van Rensen JJS (2002) A quantitative analysis of the chlorophyll fluorescence induction in terms of electron transfer rates at donor and acceptor sides of photosystem II. In: Proceedings of the 12th International Congress Photosynthesis, Brisbane, 18–23 August, 2001 S14–10 (on CD)
Vredenberg WJ, Van Rensen JJS and Rodrigues GC (2005) On the sub-maximal yield and photo-electric stimulation of chlorophyll a fluorescence in single turnover excitations in plant cells. Bioelectrochemistry 68: 83–90
Vredenberg WJ, Kasalicky V, Durchan M and Prášil O (2006) The chlorophyll a fluorescence induction pattern in chloroplasts upon repetitive single turnover excitations: Accumulation and function of QB-nonreducing centers. Biochim Biophys Acta 1757: 173–181
Vredenberg WJ, Durchan M and Prášil O (2007) On the chlorophyll fluorescence yield in chloroplasts upon excitation with twin turnover flashes (TTF) and high frequency flash trains. Photosynth Res 93: 183–192
Walas SM (1991) Modeling with differential equations in chemical engineering, Butterworth-Heinemann, Boston, MA
Zhu X-G, Govindjee, Baker NR, deSturler E, Ort D and Long SP (2005) Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with photosystem II. Planta 23: 114–133
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Vredenberg, W., Prášil, O. (2009). Modeling of Chlorophyll a Fluorescence Kinetics in Plant Cells: Derivation of a Descriptive Algorithm. In: Laisk, A., Nedbal, L., Govindjee (eds) Photosynthesis in silico . Advances in Photosynthesis and Respiration, vol 29. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-9237-4_6
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