Abstract
Modulation of cancer growth by the immune system is a natural phenomenon that can be enhanced by immune manipulation. The complexity of this biological event has only partially explored. Conventional monitoring of immune responses has extensively focused on specific interactions between immune and cancer cells based on limited number of well defined molecules. The discovery of additional co-factors and multiple components involved in a variety of signal transduction and other regulatory pathways of immune recognition has broadened the horizons of conventional immunology studies. As the understanding of the network of interactions between individual molecules associated with immune function increases, it is becoming apparent that no single mechanism or hypothesis can in itself explain complex phenomena such as immunologically-mediated tumor rejection. As described in depth in previous chapters, the components of the innate and adaptive immune response that may be involved in successful tumor rejection are far more complex than it could be described with a hypothesis centered approach as least at the time of this writings. Several components of the immune response may be genetically pre-programmed, epigenetically modified and variably recruited or regulated within the tumor microenvironment by factors with immune modulatory properties secreted by tumor and/or bystander cells. Such complexity can only be appreciated and resolved with the help of high throughput tools capable of providing a global view of biological processes as they occur. A dynamic snap shot at the global transcript level could provide a whole insight of tumor host interaction and lead to a better understanding of the mechanisms of tumor rejection. In this chapter, we will select examples of how high-throughput gene expression profiling may contribute to the understanding of anti-cancer immune responses and strategies which could be applied in immune monitor during cancer therapy.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Wolfel T., Klehmann E., Muller C., Schutt K.H., Meyer zum Buschenfelde K.H., Knuth A. Lysis of human melanoma cells by autologous cytolytic T cell clones. Identification of human histocompatibility leukocyte antigen A2 as a restriction element for three different antigens. J Exp Med 1989, 170:797–810.
Kawakami Y., Zakut R., Topalian S.L., Stotter H., Rosenberg S.A. Shared human melanoma antigens. Recognition by tumor-infiltrating lymphocytes in HLA-A2.1-transfected melanomas. J Immunol 1992, 148:638–643.
Atkins M.B., Lotze M.T., Dutcher J.P., et al. High-dose recombinant interleukin-2 therapy for patients with metastatic melanoma: analysis of 270 patients treated between 1985 and 1993. J Clin Oncol 1998, 17:2105–2116.
Yang J.C., Rosenberg S.A. An ongoing prospective randomized comparison of interleukin-2 regimens for the treatment of metastatic renal cell cancer [see comments]. Cancer J Sci.Am 1997, 3Suppl 1:S79–84:S79–S84.
van der Bruggen P., Traversari C., Chomez P., et al. A gene encoding an antigen recognized by cytolytic T lymphocytes on a human melanoma. Science 1991, 254:1643–1647.
Old L.J., Chen Y.T. New Paths in Human Cancer Serology. J Exp.Med 1998, 187:1163–1167.
Boon T., Coulie P.G., Van den Eynde B. Tumor antigens recognized by T cells. Immunol Today 1997, 18:267–268.
Rosenberg S.A. Cancer vaccines based on the identification of genes encoding cancer regression antigens. Immunol Today 1997, 18:175–182.
Marincola F.M., Ferrone S. Immunotherapy of melanoma: the good news, the bad news and what to do next. Sem Cancer Biol 2003, 13:387–389.
Cormier J.N., Salgaller M.L., Prevette T., et al. Enhancement of cellular immunity in melanoma patients immunized with a peptide from MART-1/Melan A [see comments]. Cancer J.Sci.Am. 1997, 3:37–44.
Rosenberg S.A., Yang J.C., Schwartzentruber D., et al. Immunologic and therapeutic evaluation of a synthetic tumor associated peptide vaccine for the treatment of patients with metastatic melanoma. Nat Med 1998, 4:321–327.
Lengauer C., Kinzler K.W., Vogelstein B. Genetic instabilities in human cancers. Nature 1998, 396:643–649.
Dunn G.P., Bruce A.T., Ikeda H., Old L.J., Schreiber R.D. Cancer immunoediting: from immunosurveillance to tumor escape. Nature Immunol. 2002, 3:991–998.
Marincola F.M., Wang E., Herlyn M., Seliger B., Ferrone S. Tumors as elusive targets of T cell-directed immunotherapy. Trends Immunol 2003, 24:334–341.
Monsurro’ V., Wang E., Panelli M.C., et al. Active-specific immunization against cancer: is the problem at the receiving end? Sem Cancer Biol 2003, 13:473–480.
Jin P., Wang E.: Polymorphism in clinical immunology. From HLA typing to immunogenetic profiling. J Transl Med 2003, 1:8.
Marincola F.M., Jaffe E.M., Hicklin D.J., Ferrone S. Escape of human solid tumors from T cell recognition: molecular mechanisms and functional significance. Adv Immunol 2000, 74:181–273.
Marincola F.M., Shamamian P., Rivoltini L., et al. HLA associations in the anti-tumor response against malignant melanoma J Immunother 1996, 18:242–252.
Keen L.J. The extent and analysis of cytokine and cytokine receptor gene polymorphism. Transpl Immunol 2002, 10:143–146.
Turner D., Choudhury F., Reynard M., Railton D. Navarrete C. Typing of multiple single nucleotide polymorphisms in cytokine and receptor genes using SNaPshot. Hum Immunol 2002, 63:508–513.
McCarron S.L., Edwards S., Evans P.R. The Cancer Research Campaign/British Prostate Group United Kingdom Familial Prostate Cancer Study Collaborators, Easton DF, Eeles RA, Howell WM: Influence of cytokine gene polymorphism on the development of prostate cancer. Cancer Res 2002, 62:3369–3372.
Howell W.M., Turner S.J., Bateman A.C., Theaker J.M. IL-10 promoter polymorphisms influence tumor development in cutaneous malignant melanoma. Genes Immun 2001, 2:25–31.
Howell W.M., Bateman A.C., Turner S.J., Collins A., Theaker J.M. Influence of vascular endothelial growth factor single nucleotide polymorphisms on tumor development in cutaneous malignant melanoma. Genes Immun 2002, 3:229–232.
Bidwell J.P., Alvarez M., Feister H., Onyia J., Hock J. Nuclear matrix proteins and osteoblast gene expression. J Bone Miner Res 1998, 13:155–167.
Schwab E.D., Pienta K.J. Cancer as a complex adaptive system. Med Hypotheses 1996, 47:235–241.
Cucuianu A. Chaos in cancer? Nat Med 1998, 4:1342–1343.
Dalgleish A. The relevance of non-linear mathematics (chaos theory) to the treatment of cancer, the role of the immune response and the potential for vaccines. QJM 1999, 92:347–359.
Wang E., Marincola F.M. cDNA microarrays and the enigma of melanoma immune responsiveness. Cancer J Sci Am 2001, 7:16–23.
Wang E., Panelli M.C., Marincola F.M. Genomic analysis of cancer. Princ Pract Oncol 2003, 17:1–16.
Wang E., Marincola F.M. A natural history of melanoma: serial gene expression analysis. Immunol Today 2000, 21:619–623.
Andersen M.H., Gehl J., Reker S., et al. Dynamic changes of specific T cell responses to melanoma correlate with IL-2 administration. Sem Cancer Biol 2003, 13:449–459.
Parmiani G., Castelli C., Rivoltini L., et al. Immunotherapy of melanoma. Sem Cancer Biol 2003, 13:391–400.
Horig H., Kaufman H.L. Local delivery of poxvirus vaccines for melanoma. Sem Cancer Biol 2003, 13:417–422.
Scheibenbogen C., Letsch A., Schmittel A., Asemissen A.M., Thiel E., Keilholz U. Rational peptide-based tumor vaccine development and T cell monitoring. Sem Cancer Biol 2003, 13:423–429.
Talebi T., Weber J.S. Peptide vaccine trials for melanoma: preclinical background and clinical results. Sem Cancer Biol 2003, 13:431–438.
Paczesny S., Ueno H., Fay J., Banchereau J., Palucka K. Dendritic cells as vectors for immunotherapy of cancer. Sem Cancer Biol 2003, 13:439–447.
Speiser D.E., Pittet M.J., Rimoldi D., et al. Evaluation of melanoma vaccines with molecularly defined antigens by ex vivo monitoring of tumor specific T cells. Sem Cancer Biol 2003, 13:461–472.
Kaech S.M., Hemby S., Kersh E., Ahmed R. Molecular and functional profiling of memory CD8 T cell differentiation. Cell 2002, 111:837–851.
Wherry E.J., Teichgraber V., Becker T.C., et al. Lineage relationship and protective immunity of memory CD8 T cell subsets. Nature Immunol 2003, 4:225–234.
van Baarle D., Kostense S., van Oers M.H.J., Miedema F. Failing immune control as a result of impaired CD8+ T-cell maturation: CD27 might provide a clue. Trends Immunol 2002, 23:586–591.
Monsurro’ V., Nagorsen D., Wang E., et al. Functional heterogeneity of vaccineinduced CD8+ T cells. J Immunol 2002, 168:5933–5942.
Wang E., Miller L., Ohnmacht G.A., Liu E., Marincola F.M. High fidelity mRNA amplification for gene profiling using cDNA microarrays. Nature Biotech 2000, 17:457–459.
Wang E., Marincola F.M. Amplification of small quantities of mRNA for transcript analysis. In DNA arrays-A Molecular Cloning Manual, edn First. Edited by Bowtell D, Sambrook J. Cold Springs Harbor, NY: Cold Spring Harbor Laboratory Press; 2002:204–213.
Kammula U.S., Lee K.-H., Riker A., et al. Functional analysis of antigen-specific T lymphocytes by serial measurement of gene expression in peripheral blood mononuclear cells and tumor specimens. J Immunol 1999, 163:6867–6879.
Panelli M.C., Riker A., Kammula U.S., et al. Expansion of Tumor/T cell pairs from Fine Needle Aspirates (FNA) of Melanoma Metastases. J Immunol 2000, 164:495–504.
Pockaj B.A., Sherry R.M., Wei J.P., et al. Localization of 111indium-labeled tumor infiltrating lymphocytes to tumor in patients receiving adoptive immunotherapy. Augmentation with cyclophosphamide and correlation with response. Cancer 1994, 73:1731–1737.
Fuchs E.J., Matzinger P. Is cancer dangerous to the immune system? Semin. Immunol. 1996, 8:271–280.
Ohnmacht G.A., Wang E., Mocellin S., et al. Short term kinetics of tumor antigen expression in response to vaccination. J Immunol 2001, 167:1809–1820.
Wang E., Miller L.D., Ohnmacht G.A., et al. Prospective molecular profiling of subcutaneous melanoma metastases suggests classifiers of immune responsiveness. Cancer Res 2002, 62:3581–3586.
Panelli M.C., Wang E., Phan G., et al. Genetic profiling of peripharal mononuclear cells and melanoma metastases in response to systemic interleukin-2 administration. Genome Biol 2002, 3:RESEARCH0035.
Wang E., Marincola F.M., Stroncek D. Human leukocyte antigen (HLA) and Human Neutrophil Antigen (HNA) systems. In HEMATOLOGY: Basic Principles and Practice., edn 4th. Edited by Hoffman R, Benz EJ, Shattil SJ, Furie B, Cohen HJ, Silberstein LE, McGlave P. Philadelphia. PA: Elsevier Science; 2003.
Rubin J.T., Adams S.D., Simonis T., Lotze M.T. HLA polymorphism and response to IL-2 bases therapy in patients with melanoma. Proc.Soc.Biol.Ther.Annu.Meet. 1991, 1:18.
Lee J.E., Reveille J.D., Ross M.I., Platsoucas C.D. HLA-DQB1*0301 association with increased cutaneous melanoma risk. Int J Cancer; 59(4):510–3 1994.
Howell W.M., Calder P.C., Grimble R.F. Gene polymorphisms, inflammatory diseases and cancer. Proc Nutr Soc 2002, 61:447–456.
Wang E., Adams S., Zhao Y., et al. A strategy for detection of known and unknown SNP using a minimum number of oligonucleotides. J Transl Med 2003, 1:4.
Marincola F.M. Mechanisms of immune escape and immune tolerance. In Principles and practice of the biologic therapy of cancer., edn Third. Edited by Rosenberg SA. Philadelphia: Lippincott Williams & Wilkins; 2000:601–617.
Bittner M., Meltzer P., Chen Y., et al. Molecular classification of cutaneous melignant melanoma by gene expression: shifting from a countinuous spectrum to distinct biologic entities. Nature 2000, 406:536–840.
Mocellin S., Panelli M.C., Wang E., Nagorsen D., Marincola F.M. The dual role of IL-10. Trends Immunol 2002, 24:36–43.
Taniguchi T. Transcription factors IRF-1 and IRF-2: linking the immune responses and tumor suppression. J Cell Physiol 1997, 173:128–130.
Daniel D., Meyer-Morse N., Bergsland E.K., Dehne K., Coussens L.M., Hanahan D. Immune enhancement of skin carcinogenesis by CD4+ T cells. J Exp Med 2003, 197:1017–1028.
Hanahan D., Lanzavecchia A., Mihich E. Fourteenth Annual Pezcoller Symposium: the novel dichotomy of immune interactions with tumors. Cancer Res 2003, 63:3005–3008.
Margolin K.A. Interleukin-2 in the treatment of renal cancer. Semin Oncol 2000, 27:194–203.
Cotran R.S., Pober J.S., Gimbrone M.A. Jr., et al. Endothelial activation during interleukin 2 immunotherapy. A possible mechanism for the vascular leak syndrome. J Immunol 1988, 140:1883–1888.
Kasid A., Director E.P., Rosenberg S.A. Induction of endogenous cytokine-mRNA in circulating peripheral blood mononuclear cells by IL-2 administration to cancer patients. J Immunol 1989, 143:736–739.
Panelli M.C., Martin B., Nagorsen D., et al. A genomic and proteomic-based hypothesis on the eclectic effects of systemic interleukin-2 administration in the context of melanoma-specific immunization. Cells Tissues Organs 2004;177(3):124–31
Monsurro V., Wang E., Yamano Y., et al. Quiescent phenotype of tumor-specific CD8+ T cells following immunization. Blood. 2004;104(7):1970–1978.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2005 Springer
About this chapter
Cite this chapter
Wang, E. (2005). Microarrays. In: Nagorsen, D., Marincola, F. (eds) Analyzing T Cell Responses. Springer, Dordrecht. https://doi.org/10.1007/1-4020-3623-X_17
Download citation
DOI: https://doi.org/10.1007/1-4020-3623-X_17
Publisher Name: Springer, Dordrecht
Print ISBN: 978-1-4020-3622-4
Online ISBN: 978-1-4020-3623-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)