Abstract
The review describes two major groups of α-amino acid ester hydrolases (AEHs)—enzymes with a similar active center structure, which determines their unique specificity to esters containing an amino group in the α position to the carbonyl. The first group comprises microbial AEHs of the β-lactam acylase type. Technical biocatalysts based on this group of enzymes are used for the production of semi-synthetic amino-β-lactam antibiotics. The second AEH group includes eukaryotic valacyclovirases, which activate in vivo a number of antiviral and anticancer prodrugs. The directed activity of these enzymes is used for the development of target pharmaceutical preparations for the therapy of viral and oncological diseases. The review summarizes and compares the available data on the structure and properties, substrate specificity, and the kinetic parameters of enzymes of these two groups. Experiments identifying the AEH active site and providing the molecular basis for the unique specificity of these enzymes are discussed. The data from the available scientific and patent publications concerning the aminopenicillin and aminocephalosporin synthesis catalyzed by β-lactam acylase AEHs are reviewed and systematized.
Similar content being viewed by others
Abbreviations
- AEH:
-
α-amino acid ester hydrolase
- 7-ADCA:
-
7-aminodesacetoxycephalosporanic acid
- 6-APA:
-
6-aminopenicillanic acid
- 7-ACA:
-
7-aminocephalosporanic acid
- D-PG:
-
D-phenylglycine
- D-HPG:
-
D-p-hydroxyphenylglycine
- BPHL:
-
biphenyl hydrolase-like protein
- VACV:
-
valacyclovir
- VACVase:
-
valacyclovirase
- hVACVase, rVACVase:
-
human or rat valacyclovirase, respectively
- k cat :
-
catalytic constant
- Km :
-
Michaelis constant
- PEG:
-
polyethylene glycol
- CLEAs:
-
cross-linked enzyme aggregates
References
Takahashi, T., Yamazaki, Y., and Kato, K., Biochem. J., 1974, vol. 137, pp. 497–503.
Nys, P.S., Kurochkina, V.B., Sklyarenko, A.V., and Veinberg, G.A., Antibiot. Khimioter., 2000, vol. 45, no. 11, pp. 36–42.
Schmidt, F.R., in The Mycota, 2nd ed., Hofrichter, M., Ed., Berlin Heidelberg: Springer-Verlag, 2010, vol. 10, Ch. 5, pp. 101–121.
DSM internet site: www.dsm.com/en-US/cworld/pub-lic/home/pages/home.jsp
Barends, T.R.M., Polderman-Tijmes, J.J., Jekel, P.A., Williams, C., Wybenga, G., Janssen, D.B., and Dijkstra, B.W., J. Biol. Chem., 2006, vol. 281, pp. 5804–5810.
Blum, J.K., and Bommarius, A.S., J. Mol. Catal. B: Enzym., 2010, vol. 67, pp. 21–28.
Burnette, T.C., Harrington, J.A., Rear-Don, J.E., Merrill, B.M., and de Miranda, P., J. Biol. Chem., 1995, vol. 270, pp. 15827–15831.
Kim, I., X.-Y. Chu, Kim, S., Provoda, C.J., Lee, K-D., and Amidon, G.L., J. Biol. Chem., 2003, vol. 278, pp. 25348–25356.
Kim, I., Song, X., Vig, B.S., Mittal, S., Shin, H.C., Lorenzi, P.J., and Amidon, G.L., Mol. Pharmaceutics, 2004, vol. 1, pp. 117–127.
Lai, L., Z. Xu, J. Zhou, K-D. Lee, G.L. Amidon, J. Biol. Chem., 2008, vol. 283, pp. 9318–9327.
Takahashi, T., Yamazaki, Y., Kato, K., and Isono, M., J. Am. Chem. Soc., 1972, vol. 94, pp. 4035–4037.
Kato, K., Kato, K., Kawahara, K., and Takahashi, T., Agric. Biol. Chem., 1980, vol. 44, pp. 821–825.
Okachi, R., Okachi, R., Kato, K., Miyamura, Y., and Nara, T., Agric. Biol. Chem., 1973, vol. 37, pp. 1953–1957.
Okachi, R., Okachi, R., and Nara, T., Agric. Biol. Chem., 1973, vol. 37, pp. 2797–2804.
Shimizu, M., Masuike, T., Fujita, H., Kimura, K., Okachi, R., and Nara, T., Agric. Biol. Chem., 1975, vol. 39, pp. 1225–1232.
Kawamori, M., Hashimoto, Y., Katsumata, R., Okachi, R., and Takayama, K., Agric. Biol. Chem., 1983, vol. 47, pp. 2503–2509.
Wang, M., Wang, Z., Yue, H., Han, W., and Jiao, Q., Wei Sheng Wu Xue Bao, 1990, vol. 30, pp. 238–241.
Penzikova, G.A., Oreshina, M.G., and Kuznetsova, V.D., Antibiotiki, 1980, vol. 25, pp. 905–909.
Ryu, Y.W., and Ryu, D.Y., Enzyme Microb. Technol., 1987, vol. 9, pp. 339–344.
Kim, D.J. and Byun, S.M., Biochim. Biophys. Acta, Prot. Struc. Mol. Enzymol., 1990, vol. 1040, pp. 12–18.
Krest’yanova, I.N., Uvarov, N.N., Rudenskaya, G.N., Tsibanov, V.V., Vasil’eva, L.I., and Stepanov, V.M., Biokhimiya, 1990, vol. 55, pp. 12–18.
Blinkovsky, A.M. and Markaryan, A.N., Enzyme Microb. Technol., 1993, vol. 15, pp. 965–973.
Zaslavskaya, P.L., Chekalina, I.V., Igans, D.N., Bartoshevich, Y.E., and Nys, P.S., Biotechnol. Appl. Biochem., 1993, vol. 18, pp. 299–309.
Choi, W.G., Lee, S.B., and Ryu, D.Y., Biotechnol. Bioeng, 1981, vol. 23, pp. 361–371.
Ryu, Y.W., and Ryu, D.Y., Enzyme Microb. Technol., 1988, vol. 10, pp. 239–245.
Takahashi, T., Kato, K., Yamazaki, Y., and Isono, M., Jpn. J. Antibiot., 1977, vol. 30, pp. 230–S238.
Kato, K., K. Kawahara, T. Takahashi, A. Kakinuma, Agric. Biol. Chem., 1980, vol. 44, pp. 1069–1074.
Kato, K., Kawahara, K., Takahashi, T., and Kakinuma, A., Agric. Biol. Chem., 1980, vol. 44, pp. 1075–1081.
Kato, K. and Kakinuma, A., Agric. Biol. Chem., 1980, vol. 44, pp. 1663–1664.
Nam, D.H. and C. Kim, Biothechnol. Bioeng., 1985, vol. 27, pp. 953–960.
Okubo, A., Nagaoka, K., Yokota, S., Konishi, E., and Kakutani, T., Int. Patent No. WO02086127, C12N15/55, C12N15/86, C12N15/88, 2002.
Kim, D.J. and Byun, S.M., Biochem. Biophys. Res. Commun., 1990, vol. 166, pp. 904–908.
Kuwana, N., Kawamura T., and Fukumura, M., US Patent No. US3716454, A61K31/43, A61K35/74, C07D499/68, C12P1/04, C12P37/02, A61K, C07D, (IPC1-7): C12D9/00, 1973.
Nam, D.H., and Ryu, D.D.Y., Kor. J. Appl. Microbiol. Biotechnol., 1988, vol. 16, pp. 363–368.
Alonso, J. and Garcia, J.L., Microbiology, 1996, vol. 142, pp. 2951–2957.
Polderman-Tijmes, J.J., Jekel, P.A., de Vries, E.J., van Merode, A.E.J., Floris, R., van der Laan, J.-M., Sonke, T., and Janssen, D.B., Appl. Environ. Microbiol., 2002, vol. 68, pp. 211–218.
Polderman-Tijmes, J.J., Jekel, P.A., Jeronimus-Stratingh, C.M., Bruins, A.P., van der Laan, J.-M., Sonke, T., and Janssen, D.B., J. Biol. Chem., 2002, vol. 277, pp. 28474–28482.
Van der Laan, J.-M., Polderman-Tijmes, J.J., and Barends, T.R.M., Int. Patent No. WO02086111, C12N15/55, C12N9/18, (IPC1-7): C12N9/00, 2002.
Barends, T.R.M., Polderman-Tijmes, J.J., Jekel, P.A., Hensgens, C.M.H., de Vries, E.J., Janssen, D.B., and Dijkstra, B.W., J. Biol. Chem., 2003, vol. 278, pp. 23076–23084.
da Silva, C.R., Ferro, J.A., Reinach, F.C., Farah, C.S., and Furlan, L.R., Nature, 2002, vol. 417, pp. 459–463.
Barends, T.R.M., Hensgens, C.M.H., Polderman-Tijmes, J.J., Jekel, P.A., de Vries, E.J., Janssen, D.B., and Dijkstra, B.W., Acta Crystallogr., Sect. D: Biol. Crystallogr., 2003, vol. 59, pp. 158–160.
Barends, T.R.M. and Dijkstra, B.W., Acta Crystallogr., Sect. D: Biol. Crystallogr., 2003, vol. 59, pp. 2237–2241.
Barends, T.R.M., Yoshida, H., and Dijkstra, B.W., Curr. Opin. Biotechnol., 2004, vol. 15, pp. 356–363.
Zarubina, S.A. Uporov, I.V., Fedorchuk, E.A., Fedorchuk, V.V., Sklyarenko, A.V., Yarotskii, S.V. and Tishkov, V.I., Acta Naturae, 2013, vol. 5, no. 3 (in press).
Puente, X.S. and Lopez-Oten, C., J. Biol. Chem., 1995, vol. 270, pp. 12926–12932.
Kim, I., Crippen, G.M., and Amidon, G.L., Mol. Pharmaceutics, 2004, vol. I, pp. 434–446.
Fernandez-Lafuente, R., Hernandez-Justiz, O., Mateo, C., Terreni, M., Alonso, J., Garsia-Lopez, J.L., Moreno, M.A., and Guisan, J.M., J. Mol. Calal. B: Enzym., 2001, vol. 11, pp. 633–638.
Deaguero, A.L., Blum, J.K., and Bommarius, A.S., Biocatalytic Synthesis of p-Lactam Antibiotics: Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology, Flickinger, M.C., Ed., New York: John Wiley and Sons, 2010, pp. 1–32.
Krest’yanova, I.N., Vasil’eva, L.I., Denyakina, E.K., Petrova, L.I., Penzikova, G.A., Bartoshevich, Yu.E., and Neklyudov, A.D., Prikl. Biokhim. Mikrobiol., 1985, vol. 21, no. 1, pp. 48–55.
Nam, D.H., Ryu, Y.W., and Ryu, D.D.Y., J. Microbiol. Biotechnol., 2001, vol. 11, pp. 329–332.
Rhee, D.K, Lee, S.B., Rhee, J.S., Ryu, D.D.Y., and Hospodka, J., Biothechnol. Bioeng., 1980, vol. 22, pp. 1237–1247.
Hyun, C.K., Choi, J.H., Kim, J.H., and Ryu, D.D.Y., Biothechnol. Bioeng., 1993, vol. 41, pp. 654–658.
Duggleby, H.J., Tolley, S.P., Hill, C.P., Dodson, E.J., and Moody, P.C.E., Nature, 1995, vol. 373, pp. 264–268.
Dodson, G. and Wlodawer, A., Trends Biochem. Sci., 1998, vol. 23, pp. 347–352.
Hemandez-Justiz, O., Terreni, M., Pagani, G., Garcia, J.L., Guisan, J.M., and Fernandez-Lafuente, R., Enzyme Microb. Technol., 1999, vol. 25, pp. 336–343.
Fernandez-Lafuente, R., Hernandez-Justiz, O., Mateo, C., Terreni, M., Fernandez-Lorente, G., Moreno, M.A., Alonso, J., Garcia-Lopez, J. L., and Guisan, J.M., Biomacromolecules, 2001, vol. 2, pp. 95–104.
Lee, D.K. and Yoo, D.Y., Korean Patent No. KR810000048, C12P35/04, (IPC1-7): C12P35/04, 1981.
Kurochkina, V.B. and Nys, P.S., Antibiot. Khimioter., 1999, vol. 44, no. 8, pp. 6–11.
Kurochkina, V.B. and Nys, P.S., Biocatal. Biotransform., 2002, vol. 20, pp. 11–35.
Nys, P.S, Kurochkina, V.B., Sklyarenko, A.V., and Egorov, A.M., RF Patent No. RU2221046, C12P37/04, C12N11/02, C12N9/14, C12N11/02, C12RL19, C12RL38, C12RL64, 2004.
Sklyarenko, A.V., Kurochkina, V.B., Satarova, D.E., and Krest’yanova, I.N, RF Patent No. RU2381273,C12Nll/00, C12N11/02,C12N19/14, 2009.
Xiong Xui, Sklyarenko, A.V., Jiang Yong., Kurochkina, V.B., Hu Yuanhui, and Satarova, D.E., Chinese Patent No. CN101525603, C12N11/02, C12N9/16, C12P35/00, C12P37/00, 2009.
Hashimoto, Y., Kimura, K., Kobayashi, S., and Matsukuma, I., US Patent No. US4332896, C07D463/00, C12P17/18, (IPC1-7): C12P17/18, 1982.
Ivankin, A.N. and Neklyudov, A.D., Appl. Biochem. Microbiol., 2000, vol. 36, pp. 258–261.
Willner, D. and Crast, L.B., Canadian Patent No. CA1044627, C12D9/00, 1978.
Van der Does, T., Int. Patent No. WO0220819, C12P35/00, C12P37/00, C12P39/00, (IPC1-7): C12P35/02, C12P35/04, C12P37/04, C12P37/06, C12P39/00, 2002.
Daka, D., Kim, C.H., Kasahara, S., and Hyun, C.K., Korean Patent No. KR910004952B, C12P35/04, (IPCl-7):C01B33/28, C12P35/04, 1991.
Hyun, C.K., Kim, J.H., and Ryu, D.D.Y., Biotechnol. Bioeng., 1993, vol. 42, pp. 800–806.
Takeda Chemical Industries Ltd., British Patent GB1382255, C07D499/12, C07D499/64, C07D499/66, 1975.
Van der Laken, C.J., European Patent EP0339751, C12P37/04, (IPC):C12P37/04, C12P41/00, C12R1/02, 1989.
Kurochkina, V.B., Sklyarenko, A.V., Satarova, J.E., and Yarotsky, S.V., Bioprocess Biosyst. Eng., 2011, vol. 34, pp. 1103–1117.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © V.B. Kurochkina, A.V. Sklyarenko, O.V. Berezina, S.V. Yarotskii, 2012, published in Biotekhnologiya, 2012, No. 5, pp. 8–37.
Rights and permissions
About this article
Cite this article
Kurochkina, V.B., Sklyarenko, A.V., Berezina, O.V. et al. Alpha-amino acid ester hydrolases: Properties and applications. Appl Biochem Microbiol 49, 672–694 (2013). https://doi.org/10.1134/S0003683813080036
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0003683813080036