Abstract
Lithospermum (Boraginaceae) comprises approximately 40 species in both the Old and New Worlds, with a center of diversity in the southwestern United States and Mexico. Using ten cpDNA regions, a phylogeny of Lithospermum and related taxa was reconstructed. Lithospermum (including New World and Old World species) and related New World members of Lithospermeae form a monophyletic group, with Macromeria, Onosmodium, Nomosa, Lasiarrhenum, and Psilolaemus nested among species of Lithospermum. New World Lithospermeae also is a monophyletic group, with Eurasian species of Lithospermum sister to this group. Because Lithospermum is not monophyletic without the inclusion of the other New World genera, species from these genera are transferred to Lithospermum, and appropriate nomenclatural changes are made. New combinations are Lithospermum album, Lithospermum barbigerum, Lithospermum dodrantale, Lithospermum exsertum, Lithospermum helleri, Lithospemum leonotis, Lithospermum notatum, Lithospermum oaxacanum, Lithospermum pinetorum, Lithospermum rosei, Lithospermum trinverium, and Lithospermum unicum; new names are Lithospermum chiapense, Lithospermum johnstonii, Lithospermum macromeria, Lithospermum onosmodium, Lithospermum rzedowskii, and Lithospermum turneri.
Similar content being viewed by others
Literature Cited
Barfuss, H. J., R. Samuel, W. Till & T. F. Stuessy. 2005. Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) based on DNA sequence data from seven plastid regions. American Journal of Botany 92: 337–351.
Boyd, A. E. 2003. Phylogenetic relationships and corolla size evolution among Macromeria. Systematic Botany 28: 118–129.
Candolle, A. P. de. 1846. Boraginaceaede Candolle. In: A. P. de Candolle and A. L. P. P. de Candolle (eds.), Prodromus Systematis Naturalis Regni Vegetabilis. 10: 1–178. Fortin, Masson et sociorum, Paris, France.
Cohen, J. 2007. Lithospermum L. systematics: Utilizing multiple cpDNA regions and morphological characters. Botany 2007. [Abstract]
Cuénoud, P., V. Savolainen, L. W. Chatrou, M. Powell, R. J. Grayer & M. W. Chase. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. American Journal of Botany 89: 132–144.
Doyle, J. J. & J. L. Doyle. 1990. Isolation of plant DNA from fresh tissue. Focus. 12: 13–15.
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792–1797.
Farris, J. S., V. A. Albert, M. Kallersjo, D. Lipscomb & A. G. Kluge. 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12: 99–124.
Goloboff, P. 1999. Analyzing large data sets in reasonable times: Solutions for composite optima. Cladistics 15: 415–428.
———, J. S. Farris & K. C. Nixon. 2000. TNT (Tree analysis using New Technology) Ver. 1. Published by authors, Tucuman, Argentina.
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series. 41:95–98.
Johnston, I. M. 1935. Studies in the Boraginaceae, XI. Journal of the Arnold Arboretum. 16:145–205.
———. 1952. Studies in the Boraginaceae, XXIII. A survey of the genus Lithospemum. With three plates. Journal of the Arnold Arboretum 33:299–366.
———. 1953a. Studies in the Boraginaceae, XXIV. A. Three genera segregated from Lithospermum. B. Supplementary notes on Lithospermum. Journal of the Arnold Arboretum 34:1–16.
———. 1953b. Studies in the Boraginaceae, XXV. A revaluation of some genera of the Lithospermeae. Journal of the Arnold Arboretum 34: 258–300.
———. 1954a. Studies in the Boraginaceae, XXVI. Further revaluations of the genera of the Lithospermeae. Journal of the Arnold Arboretum 35:1–81.
———. 1954b. Studies in the Boraginaceae, XXVII. Some general observations concerning the Lithospermeae. Journal of the Arnold Arboretum 35: 158–166.
Langstrom, E. & M. W. Chase. 2002. Tribes of Boraginoideae (Boraginaceae) and placement of Antiphytum, Echiochilon, Ogastemma and Sericostoma: A phylogenetic analysis based on atpB plastid DNA sequence data. Plant Systematics and Evolution 234: 137–153.
Lehmann, J. G. C. 1818. Plantae e Familia Asperifoliarum Nuciferae. Dümmler, Berlin.
Muhlenberg, H. 1813. Catalogus Plantarum Americae Septentrionalis. William Hamilton, Lancaster.
Nixon, K. C. 1999. Parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407–414.
Ochoterena, H. In press. Homology in coding and non-coding DNA sequences: a parsimony perspective. Plant Systematics and Evolution.
Ralston, B. 1993. Unpublished doctoral dissertation. University of Northern Arizona Library, Flagstaff, Arizona.
Rechinger, K. H. 1967. Boraginaceae. In: H. Riedl (ed.), Flora Iranica. 48: 1–281. Akademische Druk- u. Verlagsanstalt, Graz.
Shaw, J., E. B. Lickey, J. T. Beck, S. B. Farmer, W. Liu, J. Miller, K. C. Siripun, C. T. Winder, E. E. Schilling & R. L. Small. 2005. The tortoise and the hare II: Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 92: 142–166.
———, ———, E. E. Schilling & R. L. Small. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275–288.
Simmons, M. P. & H. Ochoterena. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369–381.
Thomas, D. C., M. Weigand & H. H. Hilger. 2008. Phylogeny and systematics of Lithodora (Boraginaceae-Lithospermeae) and its affinities to the monotypic genera Mairetis, Halacsya and Paramoltkia based on ITS1 and trnL UAA - sequence data and morphology. Taxon 57: 79–97.
Turner, B. 1994a. Synoptical study of the genus Macromeria (Boraginaceae). Phytologia 77: 393–407.
———. 1994b. Revisionary study of Lasiarrhenum (Boraginaceae). Phytologia 77: 38–44.
———. 1995. Synopsis of the genus Onosmodium (Boraginaceae). Phytologia 78: 39–60.
Zhu, G., H. Riedl & R. V. Kamelin. 1995. Boraginaceae. Pp. 329–427. In: Wu, Z. Y. & P. H. Raven (eds.), Flora of China. Vol. 16 (Gentianaceae through Boraginaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis.
Acknowledgments
This research was supported by grants from the American Society of Plant Taxonomists, the Harold Moore Jr. Funds, Cornell University’s chapter of Sigma Xi, the Cornell University Graduate School, and Cornell University’s Latin American Studies Program. Without Shannon C. K. Straub, María Hilda Flores Olvera, Helga Ochoterena, Socorro Gonzalez, Paty Ledesma Hernandez, Fernando Alzate, Lucía Vázquez, Janelle M. Burke, and Caroline D. Kellogg, it would have been much more difficult to locate and collect these plants. In addition, the National Botanic Garden of Belgium, Missouri Botanical Garden, and Cornell Plantations provided leaf material, and the Royal Botanic Garden, Kew supplied one DNA isolation. Thanks to Caroline D. Kellogg for her support and comments on this manuscript. James L. Reveal gave invaluable advice concerning the nomenclature of Lithospermum as well as helpful comments on the manuscript. James S. Miller’s specific comments and advice allowed this manuscript to be ready for submission in a timely manner. Shannon C. K. Straub gave helpful comments on an early draft, and thanks to Monica Geber, M. Alejandra Gandolfo, Michael Simpson, and Lawrence Kelly for their detailed reading and comments and corrections.
Author information
Authors and Affiliations
Corresponding author
Appendices
Appendix 1. PCR amplification programs
Program for all regions except the rpl16 intron
-
1
80° for 5 minutes
-
2
94° for 30 seconds
-
3
48–58° for 1 minute
-
4
72° for 2 minutes
-
5
repeat steps 2–4 35X
-
6
72° for 10 minutes
-
7
hold 4°
Program for the rpl16 intron
-
1
80° for 5 minutes
-
2
94° for 30 seconds
-
3
59°– .5° per replication for 30 seconds
-
4
65° for 2 minutes
-
5
repeat steps 2–4 10X
-
6
94° for 25 seconds
-
7
54° for 25 seconds
-
8
65° for 2 minutes
-
9
hold 4°
Appendix 2. TNT analysis commands
rs 0; hold 10000; ratchet: iter 1000 upfactor 10 downfact 10; ratchet:; drift: iter 100; drift:; sectsch:; xmult:; tfuse: rounds 100; tfuse:; xmult: hits 10 ratchet 1000 drift 1000 css rss fuse 100; xmult:; mult 1; xmult; quit;
Rights and permissions
About this article
Cite this article
Cohen, J.I., Davis, J.I. Nomenclatural changes in Lithospermum (Boraginaceae) and related taxa following a reassessment of phylogenetic relationships. Brittonia 61, 101–111 (2009). https://doi.org/10.1007/s12228-009-9082-z
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12228-009-9082-z