Abstract
Sex identification before sexual maturity is notoriously difficult in plants with separate sexes, but is crucial to address many life history related issues. To study the performance of the two sexes in the rarely sexually reproducing dioecious moss Drepanocladus turgescens a molecular sex marker is needed. The female-targeting marker previously developed for D. trifarius and D. lycopodioides amplifies for a few D. turgescens males, which can thus not be distinguished from females. In a significant addition to the earlier developed method we sequenced the portion successfully amplified by the primers PT−3f and PT−3r for six females and three males. Differences between males and females were revealed at five sequence positions. Examination of a total of fourteen females and seven marker amplifying males confirm that females and such males differ consistently at these positions. The usefulness of a previous protocol for moss sex identification is thus extended to another dioecious moss by the addition of a step where a portion of the sex-correlated region is sequenced.
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Acknowledgments
We thank K. Mirbakhsh and M. Pietiläinen for their efficient labwork. Two reviewers provided valuable comments to an earlier version of the manuscript.
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Membership of the Botanical Society of Japan: One of the authors, Helena Korpelainen, is a member.
Appendices
Appendix 1: Protocol for gender identification in the moss Drepanocladus turgescens
For each shoot to be sexed, extract total DNA using the DNeasy® Plant Mini Kit (Qiagen). Amplify the markers using Ready-To-GoTM PCR Beads (Amersham Pharmacia Biotech).
Sex identification, Step 1: Run a PCR with the primers PT−3f (5#-GGA TTG ATA TTG GCA TTG AGT T-3#) and PT−3r (5#-TGG AAT GTC ACA TTG TTT AGG A-3#) (Korpelainen et al. 2008). Use 2 µL of template and the PCR protocol 4 min at 94 °C for initial denaturation, followed by 35 cycles of 45 s at 94 °C, 45 s at 53 °C, and 30 s at 72 °C, ending with a final extension step of 8 min at 72 °C. For samples that do not amplify, check DNA quality by running a second PCR with the primers PT−1f (5#-TTC CTA GTG GGG AAC AGA AAA A-3#) and PT−2r (5#-TAAGCGGAAAAA TGGGAT TAGA-3#) (Korpelainen et al. 2008). Use the same template amount and PCR protocol as for PT−3f and PT−3r.
Specimens that did not amplify in the first PCR, and yielded PCR products in the second are male. The other specimens could be either male or female.
Sex identification, Step 2: Sequence the region amplified by the PT−3f and PT−3r primers. Clean the amplified fragments with a DyeEx® 96 Kit (QIAGEN) using 1 portion Exonuclease I (EXO I) 20 µ/µl + 4 portions FastAP TM Thermosensitive Alkaline Phosphatase 1 µ/µl (Fermenta LIFE SCIENCE). For 20 µl PCR reaction, use 1 µl EXO I + 4 µl FastAP TM. Cycle sequencing is done with the ABI BigDye Terminator Kit (Applied Biosystems) according to the instructions on the kit (BDT ver. 2.0 or 3.1), and products are cleaned using the DyeEx 96 Kit (QIAGEN). Resolve the sequencing products (we used an ABI 3100 automated sequencer).
Edit and assemble nucleotide sequence fragments for each DNA region and align the sequences using suitable software (we used PhyDE® 0.9971; http://www.phyde.de/index.html). Check the bases at positions 11 (male = gap, female = C), 34 (G, A), 51 (G, A), 55 (T, C), and 57 (G, A), position 1 being the first one after the primer PT−3f, to identify the sex of the respective specimens (see Fig. 1).
Appendix 2
Voucher specimens, sex, amplification or not with PT−3f and PT−3r, locality (lat., long.), collector (number), herbarium: (herbarium reg. no.). When amplification occurred and sequences were successfully retrieved, the latter are found in Fig. 1. Abbreviations: m = male; f = female; PT+/PT− = amplifying or not with PT−3f and PT−3r. Samples PT1001–PT1007 were used initially, these and samples PT1007b, PT1010, PT1026, PT1027, PT1031, PT1032, PT1035, and PT1036 were used to characterize male and female sequences for the region amplified by PT−3f and PT−3r, and the remaining 34 specimens were used to verify the sex-related differences among the sequences (see “Materials and methods”).
PT1001: m, PT-, Sweden. Öland, Mörbylånga (+56.6545, +16.5712), K.Hylander 254, K.H, private herb.; PT1002: m, PT−, Sweden. Öland, SE of Eriksöre (+56.6112, +16.4958), L. Hedenäs, S: B174624; PT1003: m, PT+, Sweden. Gotland, Bunge (+57.8791, +19.0071), L. Hedenäs, S: B1124; PT1004: f, PT+, Sweden. Öland, Resmo (+56.5534, +16.4543), L. Hedenäs, S: B174629; PT1005: f, PT+, Sweden. Öland, Stenåsa (+56.5199, +16.5510), L. Hedenäs, S: B174790; PT1006: f, PT+, Sweden. Torne Lappmark, Torneträsk area (+68.3243, +18.8360), L. Hedenäs, S: B39204; PT1007: m, PT+, Sweden. Gotland, Bunge (+57.8791, +19.0071), L. Hedenäs, S: B1124; PT1007b: f, PT+, Sweden. Gotland, Othem (+57.7290, +18.6871), L. Hedenäs, S: B184192; PT1008: f, PT+, Sweden. Öland, Räpplinge (+56.8189, +16.6158), L. Hedenäs & I. Bisang, S: B184235; PT1010: m, PT-, Sweden. Öland, Räpplinge (+56.8150, +16.6057), L. Hedenäs & I. Bisang, S: B184239; PT1012: f, PT+, Sweden. Öland, Räpplinge (+56.8150, +16.6057), L. Hedenäs & I. Bisang, S: B184238; PT1014: f, PT+, Sweden. Öland, Torslunda (+56.6132, +16.4948), L. Hedenäs & I. Bisang, S: B184243; PT1015: m, PT-, Sweden. Öland, Resmo (+56.5564, +16.4660), L. Hedenäs & I. Bisang, S: B184241; PT1019: m, PT-, Sweden. Öland, Stenåsa (+56.5272, +16.5249), L. Hedenäs & I. Bisang, S: B184246; PT1022: f, PT+, Sweden. Öland, Vickleby (+56.5608, +16.4707), L. Hedenäs & I. Bisang, S: B184240; PT1023: f, PT+, Sweden. Gotland, Fleringe (+57.8880, +18.9744), L. Hedenäs, S: B184254; PT1024: m, PT+, Sweden. Gotland, Fleringe (+57.8880, +18.9744), L. Hedenäs, S: B184254; PT1025: f, PT+, Sweden. Gotland, Fleringe (+57.8892, +18.9777), L. Hedenäs, S: B184253; PT1026: m, PT+, Sweden. Gotland, Fleringe (+57.8892, +18.9777), L. Hedenäs, S: B184253; PT1027: f, PT+, Sweden. Jämtland, Aspås (+63.4403, +14.5103), L. Hedenäs, S: B184255; PT1028: m, PT+, Sweden. Gotland, Bunge (+57.8791, +19.0070), L. Hedenäs, S: B184252; PT1029: f, PT+, Sweden. Gotland, Bunge (+57.8791, +19.0070), L. Hedenäs, S: B184252; PT1031: m, PT-, Sweden. Gotland, Rute (+57.8422, +18.9274), L. Hedenäs, S: B184251; PT1032: f, PT+, Sweden. Gotland, Rute (+57.8422, +18.9274), L. Hedenäs, S: B184251; PT1033: f, PT+, Sweden. Gotland, Othem (+57.7596, +18.7028), L. Hedenäs, S: B184249; PT1035: f, PT+, Estonia. Saarema, Kingissepa (+58.1031, +22.1875), L. Hedenäs, S: B39453; PT1036: m, PT−, Estonia. Saarema, Kingissepa (+58.1031, +22.1875), L. Hedenäs, S: B39454; PT1037: m, PT−, Sweden. Härjedalen, Storsjö (+62.8896, +12.6916), N. Hakelier, S: B39106; PT1038: m, PT+, Canada. Quebec, Mingan Archipelago Nat. Park Reserve (+50.2490, −64.0062), T.A.Hedderson 8383, S: B193810; PT1039: m, PT−, Canada. Alberta. Mountain Park Area (ca. +52.91, −117.38), D. H. Vitt & W. Peterson 5498, S: B193811; PT1040: f, PT+, United States. Minnesota, Becker County (+47.1153, −95.9356), L. Hedenäs & J. A. Janssens, S: B16959; PT1041: m, PT−, United States. Alaska. Alaska Range District (ca. +63.44, −150.86), F. J. Hermann 21381, S: B194005; PT1042: f, PT+, Canada. Newfoundland, Northern Peninsula (ca. +51.62, −55.90), T. Hedderson 505 (Bryoph. Exs. T.-N. et Labr. 15), S: B194006; PT1043: f, PT+, Canada. Yukon Territory, Lake Alsek (ca. +60.75, −137.51), H. Crum & W. B. Schofield 8566, S: B194007, PT1045: m, PT+, Sweden. Gotland, Lärbro (+57.78, +18.86), L. Hedenäs, S: B196928; PT1046: m, PT−, Sweden. Gotland, Fleringe (+57.87, +18.92), L. Hedenäs & I. Bisang, S: B196905; PT1047: m, PT−, Sweden. Pite Lappmark, Arjeplog (+66.88, +16.17), G. Een, S: B79200; PT1048: m, PT−, Greenland. Scoresby Sund (ca. +70.25, −29.00), K. Holmen 18615, S: B200739; PT1049: m, PT−, Sweden. Gotland, Ardre (+57.36, +18.72), L. Hedenäs & I. Bisang, S: B204947; PT1300: m, PT−, Norway. Nord-Trøndelag, Røyrvik (+64.88, +13.81), L. Hedenäs, S: B205273; PT1301: m, PT−, USA. New York, Jefferson Co., Wartertown (+44.09, −76.11), I. Bisang 86745, S: B205489; PT1302: m, PT+, Sweden. Härjedalen, Tännäs (+62.74, +12.46), L. Hedenäs, S: B208650; PT1303: m, PT−, Sweden. Härjedalen, Tännäs (+62.75, +12.45), L. Hedenäs, S: B208654; PT1304: m, PT-, Sweden. Härjedalen, Tännäs (+62.73, +12.45), L. Hedenäs, S: B208661; PT1305: m, PT−, Sweden. Öland, Mörbylånga (+56.50, +16.45), L. Hedenäs, S: B210724; PT1306: m, PT−, Sweden. Öland, Kastlösa (+56.48, +16.46), L. Hedenäs, S: B210735; PT1307: m, PT−, Sweden. Öland, Kastlösa (+56.48, +16.47), L. Hedenäs, S: B210736; PT1308: m, PT−, Sweden. Öland, Kastlösa (+56.48, +16.48), L. Hedenäs, S: B210737; PT1309: m, PT−, Sweden. Öland, Kastlösa (+56.47, +16.49), L.Hedenäs, S: B210744.
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Hedenäs, L., Korpelainen, H. & Bisang, I. Identifying sex in non-fertile individuals of the moss Drepanocladus turgescens (Bryophyta: Amblystegiaceae) using a novel molecular approach. J Plant Res 129, 1005–1010 (2016). https://doi.org/10.1007/s10265-016-0837-9
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DOI: https://doi.org/10.1007/s10265-016-0837-9