Skip to main content
Log in

The role of zinc in the S100 proteins: insights from the X-ray structures

  • Review Article
  • Published:
Amino Acids Aims and scope Submit manuscript

Abstract

We here aim to summarise the present knowledge on zinc binding by S100 proteins. While the importance of modulation of the function of the S100 family of EF-hand proteins by calcium is well established, a substantial proportion is also regulated by zinc or copper. Indeed regulation by zinc in addition to calcium was suggested almost as soon as the first S100 protein was discovered and has been confirmed for many family members by numerous experiments. For the first, “His-Zn”, group, zinc-binding sites composed of three histidines and an aspartic acid were first proposed based on sequence comparisons and later confirmed by structural studies. A second, “Cys-Zn”, group lacks such well-defined zinc-binding motifs and for these cysteines were suggested as the main zinc ligands. There is no three-dimensional structure for a Cys-Zn S100 in the presence of zinc. However, analysis of their sequences together with their X-ray structures in the absence of zinc suggests the possibility of two zinc-binding sites: a conserved site with a degree of similarity to those of the His-Zn group and a less-defined site with a Cys interdimer-binding motif. Some S100 protein-mediated events, such as signalling in the extracellular space, where the levels of calcium are already high, are most unlikely to be calcium regulated. Therefore, a broader knowledge of the role of zinc in the functioning of the S100 proteins will add significantly to the understanding how they propagate their signals.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

Abbreviations

PDB:

Protein data bank

Pnt:

Pentamidine

References

  • Barber KR, McClintock KA, Jamieson GA Jr, Dimlich RV, Shaw GS (1999) Specificity and Zn2+ enhancement of the S100B binding epitope TRTK-12. J Biol Chem 274:1502–1508

    Article  PubMed  CAS  Google Scholar 

  • Baudier J, Cole RD (1988) Interactions between the microtubule-associated tau proteins and S100b regulate tau phosphorylation by the Ca2+/calmodulin-dependent protein kinase II. J Biol Chem 263:5876–5883

    PubMed  CAS  Google Scholar 

  • Baudier J, Holtzscherer C, Gerard D (1982) Zinc-dependent affinity chromatography of the S100b protein on phenyl-Sepharose. A rapid purification method. FEBS Lett 148:231–234

    Article  PubMed  CAS  Google Scholar 

  • Baudier J, Glasser N, Haglid K, Gerard D (1984) Purification, characterization and ion binding properties of human brain S100b protein. Biochim Biophys Acta 790:164–173

    Article  PubMed  CAS  Google Scholar 

  • Baudier J, Glasser N, Gerard D (1986) Ions binding to S100 proteins. I. Calcium- and zinc-binding properties of bovine brain S100 alpha alpha, S100a (alpha beta), and S100b (beta beta) protein: Zn2+ regulates Ca2+ binding on S100b protein. J Biol Chem 261:8192–8203

    PubMed  CAS  Google Scholar 

  • Bhattacharya S, Bunick CG, Chazin WJ (2004) Target selectivity in EF-hand calcium binding proteins. Biochim Biophys Acta 1742:69–79

    Article  PubMed  CAS  Google Scholar 

  • Bjork P et al (2009) Identification of human S100A9 as a novel target for treatment of autoimmune disease via binding to quinoline-3-carboxamides. PLoS Biol 7:e97

    Article  PubMed  Google Scholar 

  • Blindauer CA et al (2009) Structure, properties, and engineering of the major zinc binding site on human albumin. J Biol Chem 284:23116–23124

    Article  PubMed  CAS  Google Scholar 

  • Botelho HM, Koch M, Fritz G, Gomes CM (2009) Metal ions modulate the folding and stability of the tumor suppressor protein S100A2. FEBS J 276:1776–1786

    Article  PubMed  CAS  Google Scholar 

  • Bozym RA, Thompson RB, Stoddard AK, Fierke CA (2006) Measuring picomolar intracellular exchangeable zinc in PC-12 cells using a ratiometric fluorescence biosensor. ACS Chem Biol 1:103–111

    Article  PubMed  CAS  Google Scholar 

  • Brand IA, Kleineke J (1996) Intracellular zinc movement and its effect on the carbohydrate metabolism of isolated rat hepatocytes. J Biol Chem 271:1941–1949

    Article  PubMed  CAS  Google Scholar 

  • Brodersen DE, Nyborg J, Kjeldgaard M (1999) Zinc-binding site of an S100 protein revealed. Two crystal structures of Ca2+-bound human psoriasin (S100A7) in the Zn2+-loaded and Zn2+-free states. Biochemistry 38:1695–1704

    Article  PubMed  CAS  Google Scholar 

  • Castagnetto JM, Hennessy SW, Roberts VA, Getzoff ED, Tainer JA, Pique ME (2002) MDB: the metalloprotein database and browser at The Scripps Research Institute. Nucleic Acids Res 30:379–382

    Article  PubMed  CAS  Google Scholar 

  • Charpentier TH et al (2008) Divalent metal ion complexes of S100B in the absence and presence of pentamidine. J Mol Biol 382:56–73

    Article  PubMed  CAS  Google Scholar 

  • Collaborative Computational Project 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50:760–763

    Article  Google Scholar 

  • Dell’Angelica EC, Schleicher CH, Santome JA (1994) Primary structure and binding properties of calgranulin C, a novel S100-like calcium-binding protein from pig granulocytes. J Biol Chem 269:28929–28936

    PubMed  Google Scholar 

  • Deloulme JC, Assard N, Mbele GO, Mangin C, Kuwano R, Baudier J (2000) S100A6 and S100A11 are specific targets of the calcium- and zinc-binding S100B protein in vivo. J Biol Chem 275:35302–35310

    Article  PubMed  CAS  Google Scholar 

  • Fohr UG, Heizmann CW, Engelkamp D, Schafer BW, Cox JA (1995) Purification and cation binding properties of the recombinant human S100 calcium-binding protein A3, an EF-hand motif protein with high affinity for zinc. J Biol Chem 270:21056–21061

    Article  PubMed  CAS  Google Scholar 

  • Frederickson CJ, Koh JY, Bush AI (2005) The neurobiology of zinc in health and disease. Nat Rev Neurosci 6:449–462

    Article  PubMed  CAS  Google Scholar 

  • Fritz G, Heizmann CW, Kroneck PM (1998) Probing the structure of the human Ca2+- and Zn2+-binding protein S100A3: spectroscopic investigations of its transition metal ion complexes, and three-dimensional structural model. Biochim Biophys Acta 1448:264–276

    Article  PubMed  CAS  Google Scholar 

  • Fritz G, Mittl PR, Vasak M, Grutter MG, Heizmann CW (2002) The crystal structure of metal-free human EF-hand protein S100A3 at 1.7-A resolution. J Biol Chem 277:33092–33098

    Article  PubMed  CAS  Google Scholar 

  • Gentil BJ et al (2001) The giant protein AHNAK is a specific target for the calcium- and zinc-binding S100B protein: potential implications for Ca2+ homeostasis regulation by S100B. J Biol Chem 276:23253–23261

    Article  PubMed  CAS  Google Scholar 

  • Gore A, Moran A, Hershfinkel M, Sekler I (2004) Inhibitory mechanism of store-operated Ca2+ channels by zinc. J Biol Chem 279:11106–11111

    Article  PubMed  CAS  Google Scholar 

  • Heierhorst J et al (1996) Ca2+/S100 regulation of giant protein kinases. Nature 380:636–639

    Article  PubMed  CAS  Google Scholar 

  • Heierhorst J et al (1999) Synapsins as major neuronal Ca2+/S100A1-interacting proteins. Biochem J 344(Pt 2):577–583

    Article  PubMed  CAS  Google Scholar 

  • Hershfinkel M, Moran A, Grossman N, Sekler I (2001) A zinc-sensing receptor triggers the release of intracellular Ca2+ and regulates ion transport. Proc Natl Acad Sci USA 98:11749–11754

    Article  PubMed  CAS  Google Scholar 

  • Ketterman JK, Li YV (2008) Presynaptic evidence for zinc release at the mossy fiber synapse of rat hippocampus. J Neurosci Res 86:422–434

    Article  PubMed  CAS  Google Scholar 

  • Kiryushko D et al (2006) Molecular mechanisms of Ca(2+) signaling in neurons induced by the S100A4 protein. Mol Cell Biol 26:3625–3638

    Article  PubMed  CAS  Google Scholar 

  • Klingelhofer J et al (2007) Up-regulation of metastasis-promoting S100A4 (Mts-1) in rheumatoid arthritis: putative involvement in the pathogenesis of rheumatoid arthritis. Arthritis Rheum 56:779–789

    Article  PubMed  CAS  Google Scholar 

  • Koch M et al (2007) Implications on zinc binding to S100A2. Biochim Biophys Acta 1773:457–470

    Article  PubMed  CAS  Google Scholar 

  • Kordowska J, Stafford WF, Wang CL (1998) Ca2+ and Zn2+ bind to different sites and induce different conformational changes in human calcyclin. Eur J Biochem 253:57–66

    Article  PubMed  CAS  Google Scholar 

  • Korndorfer IP, Brueckner F, Skerra A (2007) The crystal structure of the human (S100A8/S100A9)2 heterotetramer, calprotectin, illustrates how conformational changes of interacting alpha-helices can determine specific association of two EF-hand proteins. J Mol Biol 370:887–898

    Article  PubMed  Google Scholar 

  • Kraemer AM, Saraiva LR, Korsching SI (2008) Structural and functional diversification in the teleost S100 family of calcium-binding proteins. BMC Evol Biol 8:48

    Article  PubMed  Google Scholar 

  • Krezel A, Maret W (2008) Thionein/metallothionein control Zn(II) availability and the activity of enzymes. J Biol Inorg Chem 13:401–409

    Article  PubMed  CAS  Google Scholar 

  • Landriscina M et al (2001) Copper induces the assembly of a multiprotein aggregate implicated in the release of fibroblast growth factor 1 in response to stress. J Biol Chem 276:25549–25557

    Article  PubMed  CAS  Google Scholar 

  • Leung IK, Mani RS, Kay CM (1987) Fluorescence studies on the Ca2+ and Zn2+ binding properties of the alpha-subunit of bovine brain S-100a protein. FEBS Lett 214:35–40

    Article  PubMed  CAS  Google Scholar 

  • Maler L, Sastry M, Chazin WJ (2002) A structural basis for S100 protein specificity derived from comparative analysis of apo and Ca(2+)-calcyclin. J Mol Biol 317:279–290

    Article  PubMed  Google Scholar 

  • Marenholz I, Heizmann CW, Fritz G (2004) S100 proteins in mouse and man: from evolution to function and pathology (including an update of the nomenclature). Biochem Biophys Res Commun 322:1111–1122

    Article  PubMed  CAS  Google Scholar 

  • Marenholz I, Lovering RC, Heizmann CW (2006) An update of the S100 nomenclature. Biochim Biophys Acta 1763:1282–1283

    Article  PubMed  CAS  Google Scholar 

  • Maret W (2009) Molecular aspects of human cellular zinc homeostasis: redox control of zinc potentials and zinc signals. Biometals 22:149–157

    Article  PubMed  CAS  Google Scholar 

  • Maret W, Li Y (2009) Coordination dynamics of zinc in proteins. Chem Rev 109:4684–4707

    Article  Google Scholar 

  • Markowitz J et al (2004) Identification and characterization of small molecule inhibitors of the calcium-dependent S100B-p53 tumor suppressor interaction. J Med Chem 47:5085–5093

    Article  PubMed  CAS  Google Scholar 

  • Marti T, Erttmann KD, Gallin MY (1996) Host-parasite interaction in human onchocerciasis: identification and sequence analysis of a novel human calgranulin. Biochem Biophys Res Commun 221:454–458

    Article  PubMed  CAS  Google Scholar 

  • Mbele GO et al (2002) The zinc- and calcium-binding S100B interacts and co-localizes with IQGAP1 during dynamic rearrangement of cell membranes. J Biol Chem 277:49998–50007

    Article  PubMed  CAS  Google Scholar 

  • Moroz OV et al (2003) Structure of the human S100A12-copper complex: implications for host-parasite defence. Acta Crystallogr D Biol Crystallogr 59:859–867

    Article  PubMed  CAS  Google Scholar 

  • Moroz OV, Blagova EV, Wilkinson AJ, Wilson KS, Bronstein IB (2009a) The crystal structures of human S100A12 in apo form and in complex with zinc: new insights into S100A12 oligomerisation. J Mol Biol 391:536–551

    Article  PubMed  CAS  Google Scholar 

  • Moroz OV et al (2009b) Both Ca2+ and Zn2+ are essential for S100A12 protein oligomerization and function. BMC Biochem 10:11

    Article  PubMed  Google Scholar 

  • Murakami M, Hirano T (2008) Intracellular zinc homeostasis and zinc signaling. Cancer Sci 99:1515–1522

    Article  PubMed  CAS  Google Scholar 

  • Nakatani Y, Yamazaki M, Chazin WJ, Yui S (2005) Regulation of S100A8/A9 (calprotectin) binding to tumor cells by zinc ion and its implication for apoptosis-inducing activity. Mediators Inflamm 2005:280–292

    Article  PubMed  Google Scholar 

  • Nishikawa T, Lee IS, Shiraishi N, Ishikawa T, Ohta Y, Nishikimi M (1997) Identification of S100b protein as copper-binding protein and its suppression of copper-induced cell damage. J Biol Chem 272:23037–23041

    Article  PubMed  CAS  Google Scholar 

  • Novitskaya V et al (2000) Oligomeric forms of the metastasis-related Mts1 (S100A4) protein stimulate neuronal differentiation in cultures of rat hippocampal neurons. J Biol Chem 275:41278–41286

    Article  PubMed  CAS  Google Scholar 

  • Oslejskova L, Grigorian M, Gay S, Neidhart M, Senolt L (2008) The metastasis associated protein S100A4: a potential novel link to inflammation and consequent aggressive behaviour of rheumatoid arthritis synovial fibroblasts. Ann Rheum Dis 67:1499–1504

    Article  PubMed  CAS  Google Scholar 

  • Ostendorp T et al (2007) Structural and functional insights into RAGE activation by multimeric S100B. EMBO J 26:3868–3878

    Article  PubMed  CAS  Google Scholar 

  • Otterbein LR, Kordowska J, Witte-Hoffmann C, Wang CL, Dominguez R (2002) Crystal structures of S100A6 in the Ca(2+)-free and Ca(2+)-bound states: the calcium sensor mechanism of S100 proteins revealed at atomic resolution. Structure 10:557–567

    Article  PubMed  CAS  Google Scholar 

  • Potterton L et al (2004) Developments in the CCP4 molecular-graphics project. Acta Crystallogr D Biol Crystallogr 60:2288–2294

    Article  PubMed  Google Scholar 

  • Ravasi T et al (2004) Probing the S100 protein family through genomic and functional analysis. Genomics 84:10–22

    Article  PubMed  CAS  Google Scholar 

  • Santamaria-Kisiel L, Rintala-Dempsey AC, Shaw GS (2006) Calcium-dependent and -independent interactions of the S100 protein family. Biochem J 396:201–214

    Article  PubMed  CAS  Google Scholar 

  • Schäfer BW et al (2000) Brain S100A5 is a novel calcium-, zinc-, and copper ion-binding protein of the EF-hand superfamily. J Biol Chem 275:30623–30630

    Article  PubMed  Google Scholar 

  • Schaub MC, Heizmann CW (2008) Calcium, troponin, calmodulin, S100 proteins: from myocardial basics to new therapeutic strategies. Biochem Biophys Res Commun 369:247–264

    Article  PubMed  CAS  Google Scholar 

  • Taccioli C et al (2009) Zinc replenishment reverses overexpression of the proinflammatory mediator S100A8 and esophageal preneoplasia in the rat. Gastroenterology 136:953–966

    Article  PubMed  CAS  Google Scholar 

  • Vogl T, Leukert N, Barczyk K, Strupat K, Roth J (2006) Biophysical characterization of S100A8 and S100A9 in the absence and presence of bivalent cations. Biochim Biophys Acta 1763:1298–1306

    Article  PubMed  CAS  Google Scholar 

  • Vogt K, Mellor J, Tong G, Nicoll R (2000) The actions of synaptically released zinc at hippocampal mossy fiber synapses. Neuron 26:187–196

    Article  PubMed  CAS  Google Scholar 

  • Vorum H et al (1996) Expression and divalent cation binding properties of the novel chemotactic inflammatory protein psoriasin. Electrophoresis 17:1787–1796

    Article  PubMed  CAS  Google Scholar 

  • Wilder PT, Baldisseri DM, Udan R, Vallely KM, Weber DJ (2003) Location of the Zn(2+)-binding site on S100B as determined by NMR spectroscopy and site-directed mutagenesis. Biochemistry 42:13410–13421

    Article  PubMed  CAS  Google Scholar 

  • Wolf R et al (2008) Chemotactic activity of S100A7 (Psoriasin) is mediated by the receptor for advanced glycation end products and potentiates inflammation with highly homologous but functionally distinct S100A15. J Immunol 181:1499–1506

    PubMed  CAS  Google Scholar 

  • Xie J, Burz DS, He W, Bronstein IB, Lednev I, Shekhtman A (2007) Hexameric calgranulin C (S100A12) binds to the receptor for advanced glycated end products (RAGE) using symmetric hydrophobic target-binding patches. J Biol Chem 282:4218–4231

    Article  PubMed  CAS  Google Scholar 

  • Yamasaki S et al (2007) Zinc is a novel intracellular second messenger. J Cell Biol 177:637–645

    Article  PubMed  CAS  Google Scholar 

  • Yanamandra K et al (2009) Amyloid formation by the pro-inflammatory S100A8/A9 proteins in the ageing prostate. PLoS One 4:e5562

    Article  PubMed  Google Scholar 

  • Yousefi R, Imani M, Ardestani SK, Saboury AA, Gheibi N, Ranjbar B (2007) Human calprotectin: effect of calcium and zinc on its secondary and tertiary structures, and role of pH in its thermal stability. Acta Biochim Biophys Sin (Shanghai) 39:795–802

    Article  CAS  Google Scholar 

  • Yu WH, Fraser PE (2001) S100beta interaction with tau is promoted by zinc and inhibited by hyperphosphorylation in Alzheimer’s disease. J Neurosci 21:2240–2246

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by European Commission funding through the SPINE2–COMPLEXES project LSHG–CT–2006–031220. We thank Alexei Murzin for the useful discussions of oligomerisation interfaces.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Olga V. Moroz or Igor B. Bronstein.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Moroz, O.V., Wilson, K.S. & Bronstein, I.B. The role of zinc in the S100 proteins: insights from the X-ray structures. Amino Acids 41, 761–772 (2011). https://doi.org/10.1007/s00726-010-0540-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00726-010-0540-4

Keywords

Navigation