Abstract
NS5A is a multifunctional non-structural protein of classical swine fever virus (CSFV) that plays an important role in viral replication, but how it exerts its functions is unknown. Here, we report the cleavage of NS5A of the vaccine C-strain, resulting in two truncated forms (b and c). Further experiments using calpain- and caspase-family-specific inhibitors, followed by a caspase-6-specific shRNAs and inhibitor, showed that the cleavage of C-strain NS5A to produce truncated form c is mediated by caspase-6, mapping to 272DTTD275, while the cleavage producing truncated form b is probably mediated by another unknown protease. shRNA-mediated downregulation of caspase-6 and blocking of enzyme activity in ST cells significantly impaired genome replication and virus production, indicating that NS5A cleavage is required for CSFV replication.
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References
Lindenbach BD, Thiel HJ, Rice CM (2007) Flaviviridae: the viruses and their replication. In: Knipe DM, Howley PM (eds) Fields virology, 5th edn. Williams & Wilkins, Lippincott, pp 1101–1152
Lamp B, Riedel C, Roman-Sosa G, Heimann M, Jacobi S, Becher P, Thiel HJ, Rümenapf T (2011) Biosynthesis of classical swine fever virus nonstructural proteins. J Virol 85:3607–3620
Chen Y, Xiao J, Xiao J, Sheng C, Wang J, Jia L, Zhi Y, Li G, Chen J, Xiao M (2012) Classical swine fever virus NS5A regulates viral RNA replication through binding to NS5B and 3′UTR. Virology 432:376–388
Sheng C, Chen Y, Xiao J, Xiao J, Wang J, Li G, Chen J, Xiao M (2012) Classical swine fever virus NS5A protein interacts with 3′-untranslated region and regulates viral RNA synthesis. Virus Res 163:636–643
Sheng C, Wang J, Xiao J, Xiao J, Chen Y, Jia L, Zhi Y, Li G, Xiao M (2012) Classical swine fever virus NS5B protein suppresses the inhibitory effect of NS5A on viral translation by binding to NS5A. J Gen Virol 93:939–950
Xiao M, Wang Y, Zhu Z, Yu J, Wan L, Chen J (2009) Influence of NS5A protein of classical swine fever virus (CSFV) on CSFV internal ribosome entry site-dependent translation. J Gen Virol 90:2923–2928
Pei J, Zhao M, Ye Z, Gou H, Wang J, Yi L, Dong X, Liu W, Luo Y, Liao M, Chen J (2014) Autophagy enhances the replication of classical swine fever virus in vitro. Autophagy 10:93–110
Zhang C, He L, Kang K, Chen H, Xu L, Zhang YM (2014) Screening of cellular proteins that interact with the classical swine fever virus non-structural protein 5A by yeast two-hybrid analysis. J Biosci 39:63–74
Sheng C, Liu X, Jiang Q, Xu B, Zhou C, Wang Y, Chen J, Xiao M (2015) Annexin A2 is involved in the production of classical swine fever virus infectious particles. J Gen Virol 96:1027–1032
Sheng C, Kou S, Jiang Q, Zhou C, Xiao J, Li J, Chen B, Zhao Y, Wang Y, Xiao M (2014) Characterization of the C-terminal sequence of NS5A necessary for the assembly and production of classical swine fever virus infectious particles. Res Vet Sci 97:449–454
Earnshaw WC, Martins LM, Kaufmann SH (1999) Mammalian caspases: structure, activation, substrates, and functions during apoptosis. Annu Rev Biochem 68:383–424
Richard A, Tulasne D (2012) Caspase cleavage of viral proteins, another way for viruses to make the best of apoptosis. Cell Death Dis 3:e277. doi:10.1038/cddis2012.18
Cho JH, Lee PY, Son WC, Chi SW, Park BC, Kim JH, Park SG (2013) Identification of the novel substrates for caspase-6 in apoptosis using proteomic approaches. BMB Rep 46:588–593
Wang XJ, Cao Q, Zhang Y, Su XD (2015) Activation and regulation of caspase-6 and its role in neurodegenerative diseases. Annu Rev Pharmacol Toxicol 55:553–572
Eléouët JF, Slee EA, Saurini F, Castagné N, Poncet D, Garrido C, Solary E, Martin SJ (2000) The viral nucleocapsid protein of transmissible gastroenteritis coronavirus (TGEV) is cleaved by caspase-6 and -7 during TGEV-induced apoptosis. J Virol 74:3975–3983
Al-Molawi N, Beardmore VA, Carter MJ, Kass GE, Roberts LO (2003) Caspase-mediated cleavage of the feline calicivirus capsid protein. J Gen Virol 84:1237–1244
Méndez E, Salas-Ocampo E, Arias CF (2004) Caspases mediate processing of the capsid precursor and cell release of human astroviruses. J Virol 78:8601–8608
Satoh S, Hirota M, Noguchi T, Hijikata M, Handa H, Shimitohno K (2000) Cleavage of hepatitis C virus nonstructural protein 5A by a caspase-like protease(s) in mammalian cells. Virology 270:476–487
Best SM, Bloom ME (2004) Caspase activation during virus infection: more than just the kiss of death? Virology 320:191–194
Kalamvoki M, Georgopoulou U, Mavromara P (2006) The NS5A protein of the hepatitis C virus genotype 1a is cleaved by caspases to produce C-terminal truncated forms of the protein that reside mainly in the cytosol. J Biol Chem 281:13449–13462
Masaki T, Suzuki R, Murakami K, Aizaki H, Ishii K, Murayama A, Date T, Matsuura Y, Miyamura T, Wakita T, Suzuki T (2008) Interaction of hepatitis C virus nonstructural protein 5A with core protein is critical for the production of infectious virus particles. J Virol 82:7964–7976
Romero-Brey I, Berger C, Kallis S, Kolovou A, Paul D, Lohmann V, Bartenschlager R (2015) NS5A domain 1 and polyprotein cleavage kinetics are critical for induction of double-membrane vesicles associated with hepatitis C virus replication. mBio 6:e00759–e00815. doi:10.1128/mBio00759-15
Shirota Y, Luo H, Qin W, Kaneko S, Yamashita T, Kobayashi K, Murakami S (2002) Hepatitis C virus (HCV) NS5A binds RNA-dependent RNA polymerase (RdRP) NS5B and modulates RNA-dependent RNA polymerase activity. J Biol Chem 277:11149–11155
Ross-Thriepland D, Harris M (2015) Hepatitis C virus NS5A: enigmatic but still promiscuous 10 years on. J Gen Virol 96:727–738
Shi Z, Sun J, Guo H, Yang Z, Ma Z, Tu C (2013) Down-regulation of cellular protein heme oxygenase 1 inhibits proliferation of classical swine fever virus in PK-15 cells. Virus Res 173:315–320
Yang Z, Shi Z, Guo H, Qu H, Zhang Y, Tu C (2015) Annexin 2 is a host protein binding to classical swine fever virus E2 glycoprotein and promoting viral growth in PK-15 cells. Virus Res 201:16–23
Goh PY, Tan YJ, Lim SP, Lim SG, Tan YH, Hong WJ (2001) The hepatitis C virus core protein interacts with NS5A and activates its caspase-mediated proteolytic cleavage. Virology 290:224–236
Kalamvoki M, Mavromara P (2004) Calcium-dependent calpain proteases are implicated in processing of the hepatitis C virus NS5A protein. J Virol 78:11865–11878
Hidajat R, Nagano-Fujii M, Deng L, Hotta H (2004) Cleavage of the hepatitis C virus NS5A protein by caspase-3 in the interferon sensitivity-determining region in a sequence-dependent manner. Kobe J Med Sci 50:153–166
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This work was supported by two projects of National Natural Science Foundation of China: Key Project (31130052) to CT and Ordinary Project (31572528) to WG.
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Xie, J., Guo, H., Gong, W. et al. Identification of cleavage of NS5A of C-strain classical swine fever virus. Arch Virol 162, 391–400 (2017). https://doi.org/10.1007/s00705-016-3117-z
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DOI: https://doi.org/10.1007/s00705-016-3117-z