Abstract
Anthostomella has long been regarded as a large, but polyphyletic genus in the family Xylariaceae, but species in this group generally lack phylogenetic data. In this study, 14 anthostomella-like taxa collected from Italy, were studied using both morphology and molecular data. Single ascospore isolates were obtained and the asexual morphs of five taxa established. The phylogenetic relationships of the xylariaceous taxa were inferred using combined ITS, RPB2, β tubulin and LSU gene regions. We introduce new sequence data for 24 with included the 14 new anthostomella-like taxa. The subfamilies Hypoxyloideae and Xylarioideae within Xylariaceae were recognized as the two major clades with high bootstrap support. Within the two clades 21 subclades were resolved and the anthostomella-like taxa clustered in five of these subclades indicating that the genus is polyphyletic. Anthostomella sensu stricto comprised A. forlicesenica, A. formosa, A. helicofissa, A. rubicola and A. obesa. The A. formosa and A. rubicola collections morphologically closely resemble the type specimens and therefore we designate reference specimens. Three new species Anthostomella helicofissa, A. forlicesenica and A. obesa are also introduced. Four distinct lineages of anthostomella-like taxa correspondent to four new genera, Anthocanalis, Brunneiperidium, Lunatiannulus and Pyriformiascoma, which are also introduced, while one clustered in Astrocystis and is introduced as a new species. Keys to the new anthostomella-like genera and species examined in this study are provided.
Similar content being viewed by others
References
Ariyawansa HA, Hawksworth DL, Hyde KD, Jones EBG, Maharachchikumbura SSN, Manamgoda DS, Thambugala KM, Udayanga D, Camporesi E, Daranagama A, Jayawardena R, Liu JK, McKenzie EHC, Phookamsak R, Senanayake IC, Shivas RG, Tian Q, Xu JC (2014) Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Divers 69:57–92
Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu J, Liu X, Stadler M, Hyde KD (2014) The sooty moulds. Fungal Divers 66:1–36
Clements FE, Shear CL (1931) The genera of fungi. H.W. Wilson, New York, p 496, pl.1–58
Daranagama DA, Liu XZ, Chamung S, Stadler M, Hyde KD (2014) A multigene genealogy reveals the phylogenetic position of Rhopalostroma lekae. Phytotaxa 186(4):177–187
Dulymamode R, Cannon PE, Peerally A (1998) Fungi from Mauritius: Anthostomella species on Pandanus. Mycol Res 102:1319–1324
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797
Eriksson OE (1966) On Anthostomella Sacc., Entosordaria (Sacc.) Hohn. and some related genera (pyrenomycetes). Sven Bot Tidskr 60:315–324
Fournier J, Stadler M, Hyde KD, Duong LM (2010) The new genus Rostrohypoxylon and two new Annulohypoxylon species from Northern Thailand. Fungal Divers 40:23–36
Francis SM (1975) Anthostomella Sacc. (Part 1). Myc Papers 139:1–97
Francis SM, Minter DW, Caine TS (1980) Three new species of Anthostomella. Trans Br Mycol Soc 75:201–206
Hall TA (1999) BioEdit: a user–friendly biological sequence alignment editor and analysis. program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Hsieh WH, Chen CY, Sivanasen A (1995) Taiwan fungi: new species and new records of Ascomycetes. Mycol Res 101:897–907
Hsieh HM, Ju YM, Rogers JD (2005) Molecular phylogeny of Hypoxylon and closely related genera. Mycologia 97:844–865
Hsieh HM, Lin CR, Fang MJ, Rogers JD, Fournier J, Lechat C, Ju YM (2010) Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phylogenet Evol 54:957–969
Hyde KD (1992) Fungi from Nypa fruticans. Nipicola carbospora gen. et sp. Nov (Ascomycotina). Crypt Bot 2:330–332
Hyde KD (1994) Fungi from Palms. XII. Three new intertidal ascomycetes from submerged palm fronds. Sydowia 46:257–264
Hyde KD (1995) Fungi from Palms. XV. Sabalicola gen. nov., and a new combination for Anthostomella sabalensioides. Nova Hed 60:595–598
Hyde KD (1996) Fungi from palms. XXVI. The genus Anthostomella, with ten new species. Nova Hed 62:273–340
Hyde KD, Goh TK (1998) Tropical Australian fresh water fungi XIV. A new species of Anthostomella and its sporodochial Geniculosporium anamorph. Nova Hed 67:1–9
Hyde KD, Taylor JE (1996) Fungi from palms. XXXI. The genus Nipicola (Ascomycetes, Xylariaceae), with one new species. Nova Hedw 63:417–424
Hyde KD, Jones EBG, Liu JK, Ariyawansha H, Boehm E, Boonmee S, Braun U, Chomnunti P, Crous P, Dai DQ, Diederich P, Dissanayake A, Doilom M, Doveri F, Hongsanan S, Jayawardena R, Lawrey JD, Li YM, Liu YX, Lücking R, Monkai J, Nelsen MP, Phookamsak R, Muggia L, Pang KL, Senanayake I, Shearer CA, Wijayawardene N, Wu HX, Thambugala M, Suetrong S, Tanaka K, Wikee S, Zhang Y, Hudson BA, Alias SA, Aptroot A, Bahkali AH, Bezerra LJ, Bhat JD, Camporesi E, Chukeatirote E, Hoog SD, Gueidan C, Hawksworth DL, Hirayama K, Kang JC, Knudsen K, Li WJ, Liu ZY, McKenzie EHC, Miller AN, Nadeeshan D, Phillip AJL, Mapook A, Raja HA, Tian Q, Zhang M, Scheuer C, Schumm F, Taylor J, Yacharoen S, Tibpromma S, Wang Y, Yan J, Li X (2013) Families of dothideomycetes. Fungal Divers 63:1–313
Index Fungorum (2014) http://www.indexfungorum.org/names/names.asp. Retrieved on 21 August 2014
Jaklitsch WM, Voglmayr H (2011) Phylogenetic relationships of five genera of Xylariales and Rosasphaeria gen. nov. (Hypocreales). Fungal Divers 52:75–98
Jaklitsch WM, Fournier J, Rogers JD, Voglmayr H (2014) Phylogenetic and taxonomic revision of Lopadostoma. Persoonia 32:52–82
Ju YM, Rogers JD (1996) A revision of the genus Hypoxylon. Mycologia Memoir, St. Paul
Ju YM, San Martín F, Rogers JD (1993) Three xylariaceous fungi with scolecosporous conidia. Mycotaxon 47:219–228
Kohlmeyer J, Volkmann-Kohlmeyer B (2002) Fungi on Juncus and Spartina: new marine species of Anthostomella, with a list of marine fungi known on Spartina. Mycol Res 106(3):365–374
Kuhnert E, Fournier J, Peršoh D, Luangsa-ard JJD, Stadler M (2014) New Hypoxylon species from Martinique and new evidence on the molecular phylogeny of Hypoxylon based on ITS rDNA and β–tubulin data. Fungal Divers 64:181–203
Læssøe T, Spooner BM (1994) Rosellinia and Astrocystis (Xylariaceae): new species and genetic concepts. Kew Bull 49:1–70
Lee S, Crous PW (2002) New species of Anthostomella on fynbos from South Africa. Mycol Res 107:360–370
Liu Y, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799–1808
Lu BS, Hyde KD (2000a) Species of Anthostomella from Portugal, including A. cyperaceicola sp.nov. and A. scirpi sp.nov. Mycotaxon 74:379–390
Lu BS, Hyde KD (2000b) A world monograph of Anthostomella. Fungal Diversity Research Series 4. Fungal Divers:1–376
Lu BS, Hyde KD (2000c) Anthostomella longa sp.nov and note on other species on monocots from Hong Kong. Crypt Mycol 21:207–214
Lumbsch HT, Huhndorf SM (2010) Outline of Ascomycota–2009; notes on ascomycete systematics. Nos. 4751–5113. Myconet 14:1–69
Lygis V, Vasiliauskas R, Larsson K-H, Stenlid J (2005) Wood-inhabiting fungi in stems of Fraxinus excelsior in declining ash stands of northern Lithuania, with particular reference to Armillaria cepistipes. Scand J For Res 20:337–346
Martin PMD (1967) Studies in the Xylariaceae. I. New and old concepts. S Afr J Bot 33:205–240
Murali TS, Suryanarayanan TS, Geeta R (2006) Endophytic Phomopsis species: host range and implications for diversity estimates. Can J Microbiol 52:673–680
Nylander JAA (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
O’Donnell K, Cigelnik E (1997) Two divergent intragenomic rDNAITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol 7:103–116
Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Com App Bios 12:357–358
Petrini LE (2013) Rosellinia–A world monograph. Gebr. Borntraeger Verlagsbuchhandlung, Stuttgart
Petrini LE, Petrini O, Fisher PJ (1987) Anthostomella calligoni, an endophyte of Suaeda fruticosa in Dorset. Trans Br Mycol Soc 89:387–389
Rappaz F (1995) Anthostomella and related xylariaceous fungi on hard wood from Europe and North America. Mycol Helv 7:99–168
Rayner RW (1970) A mycological colour chart. Commonwealth Mycological Institute and British Mycological Society, Kew
Rogers JD, Stone JK, Ju YM (1994a) Anthostomella formosa var. abietis var. nov. and notes on Apiorhynchostoma. Mycologia 86:700–703
Rogers JD, Stone JK, Yu YM (1994b) Anthostomella formosa var. abietis var. nov. and notes on Apiorhynchostoma. Mycologia 86(5):700–703
Rogers JD, Ju YM, San Martín F (1997) Jumillera and Whalleya, new genera segregated from Biscogniauxia. Mycotaxon 64:39–50
Rolshausen PE, Mahoney NE, Molyneux RJ, Gubler WD (2006) A reassessment of the species concept in Eutypa lata, the causal agent of Eutypa dieback of grapevine. Phytopathology 96(4):369–377
Ronquist F, Huelsenbeck JP, van der Mark P (2005) MrBayes 3.1 Manual. Published online at: http://mrbayes.csit.fsu.edu/manual.php
Saccardo PA (1875) Conspectus generum Pyrenomycetum Italicorum. Atti Acad Sci Veneto-Trentino-Istriana 4:101–141
Saccardo PA (1882) Sylloge Fungorum 1:1–763
Saccardo PA (1891) Sylloge Fungorum 9:1–1141
Samuels GJ, Müller E (1980) Life history studies of Brazilian ascomycetes. 8. Thamnomyces chordalis (anam. Nodulisporium) and Camillea bacillum (anam. Geniculosporium) with notes on the taxonomy of the Xylariaceae. Sydowia 32:277–292
Sánchez-Ballesteros J, González V, Salazar O, Acero J, Portal MA, Julián M, Rubio V (2000) Phylogenetic study of Hypoxylon and related genera based on ribosomal ITS sequences. Mycologia 92:964–977
Silvestro D, Michalak I (2012) raxmlGUI: a graphical front-end for RAxML. Org Divers Evol 12:335–337
Smith GJ, Liew ECY, Hyde KD (2003) The Xylariales: a monophyletic order containing 7 families. Fungal Divers 13:175–208
Spatafora JW, Sung GH, Johnson D (2006) A five-gene phylogeny of Pezizomycotina. Mycologia 98(6):1018–1028
Stadler M, Fournier J, Gardt S, Peršoh D (2010a) The phylogenetic position of Rhopalostroma as inferred from a polythetic approach. Persoonia 25:11–21
Stadler M, Fournier J, Læssøe T, Decock C, Peršoh D, Rambold G (2010b) Ruwenzoria, a new genus of the Xylariaceae from Central Africa. Mycol Prog 9:169–179
Stadler M, Kuhnert E, Peršoh D, Fournier J (2013) The Xylariaceae as model example for a unified nomenclature following the “One fungus-one name” (1F1N) concept. Mycol Int J Fungal Biol 4:5–21
Stamatakis A, Alachiotis N (2010) Time and memory efficient likelihood–based tree searches on phylogenomic alignments with missing data. Bioinformatics 26:i132–i139
Swofford DL (2002) PAUP: Phylogenetic Analysis Using parsimony. version 4.0 b10. Sinauer Associates, Sunderland
Tang AMC, Jeewon R, Hyde KD (2009) A re-evaluation of the evolutionary relationships within the Xylariaceae based on ribosomal and protein-coding gene sequences. Fungal Divers 34:127–155
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
Triebel D, Peršoh D, Wollweber H, Stadler M (2005) Phylogenetic relationships among Daldinia, Entonaema and Hypoxylon as inferred from ITS nrDNA sequences. Nova Hedw 80:25–43
Udayanga D, Liu X, Crous PW, Mckenzie EHC, Chukeatirote E, Hyde KD (2012) A multi–locus phylogenetic evaluation of Diaporthe (Phomopsis). Fungal Divers 56:157–171
Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246
White TJ, Bruns TD, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315–322
Wu ZH, Wang TH, Huang W, Qu YB (2001) A simplified method for chromosome DNA preparation from filamentous fungi. Mycosystema 20:575–577
Yip HY (1989) Four species of Anthostomella from Australia. Mycol Res 93:75–82
Yuan ZQ, Zhao ZY (1992) Anthostomella on Lonicera in China. Sydowia 44:85–89
Acknowledgments
The authors appreciate the financial support and postgraduate scholarship provided by State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing and the Mushroom Research Foundation, Chiang Mai, Thailand. The authors gratefully thank Dr Shaun Pennycook from Landcare Research University of Auckland, New Zealand for nomenclature advice on the proposed names.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Daranagama, D.A., Camporesi, E., Tian, Q. et al. Anthostomella is polyphyletic comprising several genera in Xylariaceae . Fungal Diversity 73, 203–238 (2015). https://doi.org/10.1007/s13225-015-0329-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s13225-015-0329-6