Abstract
Microbiological analysis is an integral part of food quality control, as well as of the management of food chain safety. Microbiological testing of foodstuffs complements the preventive approach to food safety activities based mainly on implementation and application of the concept of Hazard Analysis and Critical Control Points (HACCP). Traditional microbiological methods are powerful but lengthy and cumbersome and therefore not fully compatible with current requirements. Even more, pathogens exist that are fastidious to cultivate or uncultivable at all. Besides immunological tests, molecular methods, specifically those based on polymerase chain reaction (PCR), are available options to meet industry and enforcement needs. The clear advantage of PCR over all other rapid methods is the striking analytical principle that is based on amplification of DNA, a molecule being present in every cell prone to multiply. Just by changing primers and probes, different genomes such as bacteria, viruses or parasites can be detected. A second advantage is the ability to both detect and quantify a biotic contaminant. Some previously identified obstacles of implementation of molecular methods have already been overcome. Technical measures became available that improved robustness of molecular methods, and equipment and biochemicals became much more affordable. Unfortunately, molecular methods suffer from certain drawbacks that hamper their full integration to food safety control. Those encompass a suitable sample pre-treatment especially for a quantitative extraction of bacteria and viruses from solid foods, limited availability of appropriate controls to evaluate the effectiveness of the analytical procedure, the current inability of molecular methods to distinguish DNA from viable cells and DNA from dead or non-cultivable cells, and the slow progress of international harmonisation and standardisation, which limit full acceptance of PCR-based methods in food control. The aim of this review is to describe the context and the prospects of PCR-based methods, as well as trends in research and development aimed at solving the next decade challenges in order to achieve full integration of molecular methods in food safety control.
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Acknowledgments
This research was supported by the framework of the EU project funded by the 7th Framework Programme of the European Union “Safe Food for Europe—Coordination of research activities and Dissemination of research results of EC funded research on food safetyˮ (project acronym: FOODSEG) Grant agreement no. 266061. This publication reflects the views only of the authors, and the European Commission cannot be held responsible for any use which may be made of the information contained therein.
Conflict of Interest
No financial relationship with other institutions or private industry has influenced the results of this study. D. De Medici has no conflict of interest, T. Kuchta has no conflict of interest, R. Knutsson has no conflict of interest, A. Angelov has no conflict of interest, B. Auricchio has no conflict of interest, M. Barbanera has no conflict of interest, C. Diaz-Amigo has no conflict of interest, A. Fiore has no conflict of interest, E. Kudirkiene has no conflict of interest, A. Hohl has no conflict of interest, D. Horvatek Tomic has no conflict of interest, V. Gotcheva has no conflict of interest, B. Popping has no conflict of interest, E. Prukner-Radovcic has no conflict of interest, S. Scaramaglia has no conflict of interest, P. Siekel has no conflict of interest, K.A. To has no conflict of interest and M. Wagner has no conflict of interest. This article does not contain any studies with human or animal subjects.
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De Medici, D., Kuchta, T., Knutsson, R. et al. Rapid Methods for Quality Assurance of Foods: the Next Decade with Polymerase Chain Reaction (PCR)-Based Food Monitoring. Food Anal. Methods 8, 255–271 (2015). https://doi.org/10.1007/s12161-014-9915-6
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DOI: https://doi.org/10.1007/s12161-014-9915-6