Skip to main content
Log in

Discrimination among cultivars of rapeseed (Brassica napus L.) using DNA polymorphisms amplified from arbitrary primers

  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

RAPDs (Randomly Amplified Polymorphic DNAs) were used to discriminate among 23 cultivars of oilseed rape (Brassica napus) selected from several breeding programs. A set of 100 random sequence 10-mer primers were tested, of which 70 produced bands and 22 showed evidence of polymorphism. A selection of six primers produced 23 polymorphic bands of between 300 to 2200 base pairs in size, sufficient to distinguish between the cultivars. An analysis of seed of five cultivars obtained from four different sites showed stability of banding pattern over source of seed. The analysis was repeated using four different thermocyclers, each of which produced the same band pattern. UPGMA cluster analysis indicates that the relationships among some of the cultivars is closer for those from the same breeding program than for those from different programs. The results of this study show that RAPDs can be used as a method of identification for oilseed rape cultivars.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Adams H, Vaughan JG, Fenwick GR (1989) The use of glucosinolates for cultivar identification in Swede, Brassica napus L. var napobrassica (L.) Peterm. J Sci Food Agric 46:319–324

    Google Scholar 

  • Barker TA, Vuori TA, Hegedus MR, Myers DG (1992) The use of ray parameters for the discrimination of Australian wheat varieties. Pl Var and Seeds 5:35–45

    Google Scholar 

  • Buehler RE, McDonald Jr MB, Van Toai TT, St. Martin SK (1989) Soybean cultivar identification using high-performance liquid-chromatography of seed protein. Crop Sci 29:32–37

    Google Scholar 

  • Cole RA, Phelps K (1979) Use of canonical variate analysis in the differentiation of swede cultivars by gas-liquid chromatography of volatile hydrolysis products. J Sci Food Agric 30:669–676

    Google Scholar 

  • Figdore SS, Kennard WC, Song KM, Slocum MK, Osborn TC (1988) Assessment of the degree of restriction fragment length polymorphism in Brassica. Theor Appl Genet 75:833–840

    Google Scholar 

  • Gardiner SE, Forde MB (1988) Identification of cultivars and species of pasture legumes by sodium dodecylsulphate polyacrylamide gel electrophoresis of seed proteins. Pl Var and Seeds 1:13–26

    Google Scholar 

  • Gilliland TJ (1989) Electrophoresis of sexually and vegetatively propagated cultivars of allogamous species. Pl Var and Seeds 2:15–25

    Google Scholar 

  • Halligan EA, Forde MB, Warrington U (1991) Discrimination of ryegrasses by heading date under various combinations of vernalization and daylength. Pl Var and Seeds 4:115–123

    Google Scholar 

  • Heaney RK, Fenwick GR (1980) The glucosinolate content of Brassica vegetables. A chemotaxonomic approach to cultivar identification. J Sci Food Agri 31:794–801

    Google Scholar 

  • Huebner FR, Bietz JA, Webb BD, Juliano BO (1990) Rice cultivar identification by high-performance liquid chromatography of endosperm proteins. Cereal Chem 67:129–135

    Google Scholar 

  • Kidwell KK, Osborn TC (1992) Simple plant DNA isolation procedures. In: Beckman JS, Osborn TC (eds) Plant genomes: methods and physical mapping. Kluwer Academic Publishers, Netherlands, pp 1–14

    Google Scholar 

  • Marchylo BA, Hatcher DW, Kruger JE (1988) Identification of wheat cultivars by reversed-phase high-performance liquid chromatography of storage proteins. Cereal Chem 65:28–40

    Google Scholar 

  • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269–5273

    CAS  PubMed  Google Scholar 

  • Plant Varieties Journal (1991) Plant Breeders Rights Office, Ottowa, Ontario, Canada

  • Rafalski JA, Tingey SV, Willams JGK (1991) RAPD markers-a new technology for genetic mapping and plant breeding. Agbiotech News and Info 3:645–648

    Google Scholar 

  • Rao TN, Nerkar YS, Patil VD (1990) Identification of cultivars of cotton by sodium dodecylsulphate polyacrylamide-gel electrophoresis (SDS-PAGE) of soluble seed proteins. Pl Var and Seeds 3:7–13

    Google Scholar 

  • Rohlf FJ, Kishpaugh J, Kirk D (1971) NT-SYS. Numerical taxonomy system of multivariate statistical programs. Tech Rep State University of New York at Stony Brook, New York

    Google Scholar 

  • Sernyk L (1991) Catalogue of oilseed rape cultivars

  • Song KM, Osborn TC, Williams PH (1988) Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs). Theor Appl Genet 75:784–794

    CAS  Google Scholar 

  • Smith JSC (1988) Identification of pedigrees of hybrid maize (Zea mays L.) cultivars by isozyme electrophoresis and reversedphase high-performance liquid chromatography. Euphytica 39:199–205

    Google Scholar 

  • Sneath PH, Sokal RR (1973) Numerical taxonomy. W. H. Freeman and Co., San Francisco, USA

    Google Scholar 

  • Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kansas Sci Bull 38:1409–1438

    Google Scholar 

  • Tai TH, Tanksley SD (1990) A rapid and inexpensive method for isolation of total DNA from dehydrated plant tissue. Plant Mol Biol Rep 8:297–303

    Google Scholar 

  • Van Der Burg WJ, Van Zwol RA (1991) Rapid identification techniques used in laboratories of the International Seed Testing Assocoation: a survey. Seed Sci Technol 19:687–700

    Google Scholar 

  • Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213–7218

    CAS  PubMed  Google Scholar 

  • White J, Law JR (1991) Differentiation between varieties of oilseed rape (Brassica napus L.) on the basis of the fatty acid composition of the oil. Pl Var and Seeds 4:125–132

    Google Scholar 

  • Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535

    CAS  PubMed  Google Scholar 

  • Wrigley CW, Autran JC, Bushuk W (1982) Identification of cereal varieties by gel electrophoresis of the grain proteins. Adv Cereal Sci Technol 5:211–259

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by A. R. Hallauer

Contribution number 941

Rights and permissions

Reprints and permissions

About this article

Cite this article

Mailer, R.J., Scarth, R. & Fristensky, B. Discrimination among cultivars of rapeseed (Brassica napus L.) using DNA polymorphisms amplified from arbitrary primers. Theoret. Appl. Genetics 87, 697–704 (1994). https://doi.org/10.1007/BF00222895

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00222895

Key words

Navigation