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A new species in the genus Nomocharis Franchet (Liliaceae): evidence that brings the genus Nomocharis into Lilium

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Abstract

Nomocharis aperta (Franchet) E. Wilson is a heterogeneous species including morphotypes with pink tepals bearing swellings on both sides of the inner tepal’s basal median channel and those with yellow tepals lacking swellings. Molecular phylogenetic and pair-wise distance analyses of nrITS and chloroplast psbA-trnH support recognition of the yellow-flowered morphotype lacking nectary processes as a new, separate species of Nomocharis. Here, we present the new species, Nomocharis gongshanensis Y. D. Gao et X. J. He sp. nov., and resolve its systematic position in the LiliumNomocharis complex using the ITS and psbA-trnH markers. Seven variant copies of ITS were isolated from N. gongshanensis. Maximum parsimony and Bayesian analyses placed the clones in two different Nomocharis clades, N. aperta + N. saluenensis and sect. Eunomocharis, suggesting a putative hybrid origin of the new species. The psbA-trnH sequence of N. gongshanensis is identical to that of N. saluenensis, indicating that the latter may be the maternal ancestor. Our analyses support the monophyly of LiliumNomocharis and mutual paraphyly of the two genera. Nomocharis was resolved within Lilium as sister to the European lilies of sect. Liriotypus (sensu İkinci). The 12 LiliumNomocharis clades recovered in this study are consistent with previous molecular studies but are incongruent with traditional circumscription of and subgeneric divisions within Lilium. These results highlight the need for taxonomic revision of Lilium to accommodate Nomocharis and reconsideration of the origin and evolution of Nomocharis.

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References

  • Akaike H (1974) A new look at the statistical model identification. IEEE T Automat Contr 19:716–723

    Article  Google Scholar 

  • Baker JG (1871) A new synopsis of all the known lilies. Gard Chron 104:1650

    Google Scholar 

  • Balfour B (1918) The genus Nomocharis. Bot J Scot 27:273–300

    Google Scholar 

  • Baranova MV (1988) A synopsis of the system of the genus Lilium (Liliaceae). Bot Zurn 73:1319–1329

    Google Scholar 

  • Brock RD (1954) Fertility in Lilium hybrids. Heredity 8:409–420

    Article  Google Scholar 

  • Chen FB (1992) Hengduan event: an important tectonic event of the late Cenozoic in Eastern Asia. Mt Res 10:195–202

    Google Scholar 

  • Chen FB (1996) Second discussion on the Hengduan movement. Volcanol Miner Resour 17:14–22

    Google Scholar 

  • Chung SL, Lo CH, Lee TY, Zhang YQ, Xie YW, Li XH, Wang KL, Wang PL (1998) Diachronous uplift of the Tibetan plateau starting 40 Myr ago. Nature 394:769–773

    Article  CAS  Google Scholar 

  • Comber HF (1949) A new classification of genus Lilium. R Hort Soc Lily Year Book 13:85

    Google Scholar 

  • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

    Google Scholar 

  • Dubouzet JD, Shinoda K (1999) Phylogenetic analysis of the internal transcribed spacer region of Japanese Lilium species. Theor Appl Genet 98:954–960

    Article  CAS  Google Scholar 

  • Evans WE (1925) A revision of the genus Nomocharis. Notes Roy Bot Gard Edinb 15:1–46

    Google Scholar 

  • Fay MF, Chase MW, Rønsted N et al (2006) Phylogenetics of Liliales: summarized evidence from combined analyses of five plastid and one mitochondrial loci. In: Columbus JT, Friar EA, Porter JM, Prince LM, Simpson MG (eds) Monocots: comparative biology and evolution (excluding Poales). Rancho Santa Ana Botanic Garden, Claremont, CA, pp 559–565

    Google Scholar 

  • Franchet AR (1889) Nomocharis Franchet. J Bot (Morot) 3:113

    Google Scholar 

  • Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly: frequency, cause and consequences, with insights from animal mitochondrial DNA. Annu Rev Ecol Evol S 34:397–423

    Article  Google Scholar 

  • Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol Ecol 8:521–523

    PubMed  CAS  Google Scholar 

  • Harrison TM, Copeland P, Kidd WSF, Yin A (1992) Raising Tibet. Science 255:1663–1670

    Article  PubMed  CAS  Google Scholar 

  • Haw SG (1986) The lilies of China. Timber Press, Portland

    Google Scholar 

  • Hayashi K, Kawano S (2000) Molecular systematics of Lilium and allied genera (Liliaceae): phylogenetic relationships among Lilium and related genera based on the rbcL and matK gene sequence data. Plant Spec Biol 15:73–93

    Article  Google Scholar 

  • Holder MT, Lewis PO (2003) Phylogeny estimation: traditional and Bayesian approaches. Nat Rev Gene 4:275–284

    Article  CAS  Google Scholar 

  • Holderegger R, Abbott RJ (2003) Phylogeography of the Arctic-Alpine Saxifraga oppositifolia (Saxifragaceae) and some related taxa based on cpDNA and ITS sequence variation. Am J Bot 90:931–936

    Article  PubMed  CAS  Google Scholar 

  • İkinci N, Oberprieler C, Güner A (2006) On the origin of European lilies: phylogenetic analysis of Lilium section Liriotypus (Liliaceae) using sequences of the nuclear ribosomal transcribed spacers. Willdenowia 36:647–656

    Article  Google Scholar 

  • Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding psbA-trnH spacer region. PLoS One 6:e508

    Article  Google Scholar 

  • Kress WJ, Wurdack KJ, Zimmer EA, Weight LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci U S A 102:8369–8374

    Article  PubMed  CAS  Google Scholar 

  • Kumar S, Tamura K, Nei M (1993) MEGA: Molecular Evolutionary Genetics Analysis, version 1.01. The Pennsylvania State University, University Park, PA. http://evolgen.biol.metro-u.ac.jp/MEGA/manual/default.html. Accessed 8 Aug 2011

  • Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V (2008) DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci U S A 105:2923–2928

    Article  PubMed  CAS  Google Scholar 

  • Liang SY (1980) Flora Reipublicae Popularis Sinicae, vol. 14, Anagiospermae, Monocotyledoneae Liliaceae (I). Science Press, Beijing, pp 116–157

    Google Scholar 

  • Liang SY (1984) Studies on the genus Nomocharis (Liliaceae). Bull Bot Res 4:163–178

    CAS  Google Scholar 

  • Liang SY (1995) Chorology of Liliaceae (S. Str.) and its bearing on the Chinese Flora. Acta Phytotax Sin 33:27–51

    Google Scholar 

  • Liang SY, Tamura M (2000) Lilium L.; Nomocahris Franchet. In: Wu ZY, Raven PH (eds) Flora of China, vol 24. Science Press, Beijing; Missouri Botanical Garden Press, St. Louis, pp 135–159

  • Liang SY, Zhang WX (1985) Pollen morphology of the genus Nomocharis and its delimitation with Lilium. Acta Phytotax Sin 23:405–417

    Google Scholar 

  • Liu JQ, Wang YJ, Wang AL, Hideakic O, Abbott RJ (2006) Radiation and diversification within the LigulariaCremanthodiumParasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau. Mol Phylogenet Evol 38:31–49

    Article  PubMed  CAS  Google Scholar 

  • McRae EA (1998) Lilies: a guide for growers and collectors. Timber Press, Portland, pp 17–26

    Google Scholar 

  • Morrell PL, Rieseberg LH (1998) Molecular tests of the proposed diploid hybrid origin of Gilia achilleifolia (Polemoniaceae). Am J Bot 85:1439–1453

    Article  PubMed  CAS  Google Scholar 

  • Morrison DA (2009) A framework for phylogenetic sequence alignment. Plant Syst Evol 282:127–149

    Article  Google Scholar 

  • Newmaster SG, Ragupathy S (2009) Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae). Mol Ecol Res 9(Suppl 1):172–180

    CAS  Google Scholar 

  • Nishikawa T, Okazaki K, Uchino T, Arakawa K, Nagamine T (1999) A molecular phylogeny of Lilium in the internal transcribed spacer region. J Mol Evol 49:238–249

    Article  PubMed  CAS  Google Scholar 

  • Nishikawa T, Okazaki K, Arakawa K, Nagamine T (2001) Phylogenetic analysis of section Sinomartagon in genus Lilium using sequences of the internal transcribed spacer region in nuclear ribosomal DNA. Breed Sci 51:39–46

    Article  CAS  Google Scholar 

  • Nylander JAA (2004) MrModeltest 2.0. Department of Systematic Zoology, EBC, Uppsala University, Uppsala (available from the author)

  • Patterson TB, Givnish TJ (2002) Phylogeny, concerted convergence, and phylogenetic niche conservatism in the core Liliales: insights from rbcL and ndhF sequence data. Evolution 56:233–252

    PubMed  CAS  Google Scholar 

  • Peruzzi L, Leitch IJ, Caparelli KF (2009) Chromosome diversity and evolution in Liliaceae. Ann Bot (Oxford) 103:459–475

    Article  CAS  Google Scholar 

  • Rambaut A, Drummond AJ (2007) Tracer v1.4. http://beast.bio.ed.ac.uk/Tracer. Accessed 5 Aug 2011

  • Rešetnik I, Liber Z, Satovic Z, Cigić P, Nikolić T (2007) Molecular phylogeny and systematics of the Lilium carniolicum group (Liliaceae) based on nuclear ITS sequences. Plant Syst Evol 265:45–58

    Article  Google Scholar 

  • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574

    Article  PubMed  CAS  Google Scholar 

  • Rønsted N, Law S, Thornton H, Fay MF, Chase MW (2005) Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria. Mol Phylogenet Evol 35:509–527

    Article  PubMed  Google Scholar 

  • Royden LH, Burchfiel BC, Van der Hilst RD (2008) The geological evolution of the Tibetan Plateau. Science 321:1054–1058

    Article  PubMed  CAS  Google Scholar 

  • Sang T, Crawford DJ, Stuessy TF (1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Bot 84:1120–1136

    Article  PubMed  CAS  Google Scholar 

  • Sass C, Little DP, Stevenson DW, Specht CD (2007) DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS ONE 2:e1154

    Article  PubMed  Google Scholar 

  • Sealy JR (1950) Nomocharis and Lilium. Kew Bull 5:273–297

    Article  Google Scholar 

  • Sealy JR (1978) Nomocharis pardanthina Franchet f. punctulata Sealy. Notes Roy Bot Gard Edinb 36:295

    Google Scholar 

  • Sealy JR (1983) A revision of the genus Nomocharis Franchet. Bot J Linn Soc 87:285–323

    Article  Google Scholar 

  • Shaw J, Lickey EB, Schilling EE, Small RL (2007) Comparison of whole chloroplast genomes to choose non-coding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot 94:275–288

    Article  PubMed  CAS  Google Scholar 

  • Siripun KC, Schilling EE (2006) Molecular confirmation of the hybrid origin of Eupatorium godfreyanum (Asteraceae). Am J Bot 93:319–325

    Article  PubMed  CAS  Google Scholar 

  • Song J, Yao H, Li Y, Li X, Lin Y, Liu C, Han J, Xie C, Chen S (2009) Authentication of the family Polygonaceae in Chinese pharmacopoeia by DNA barcoding technique. J Ethnopharmacol 124:434–439

    Article  PubMed  CAS  Google Scholar 

  • Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, MA

    Google Scholar 

  • Tamura MN, Yamashita J, Fuse S, Haraguchi M (2004) Molecular phylogeny of monocotyledons inferred from combined analysis of plastid matK and rbcL gene sequences. J Plant Res 117:109–120

    Article  PubMed  CAS  Google Scholar 

  • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599

    Article  PubMed  CAS  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  PubMed  CAS  Google Scholar 

  • Trewick SA (2008) DNA barcoding is not enough: mismatch of taxonomy and genealogy in New Zealand grasshoppers (Orthoptera: Acrididae). Cladistics 24:240–254

    Article  Google Scholar 

  • Tuyl JM, Van Diën MP, Van Creij MGM, Van Kleinwee TCM, Franken J (1991) Application of in vitro pollination, ovary culture, ovule culture and embryo rescue for overcoming incongruity barriers in interspecific Lilium crosses. Plant Sci 74:115–126

    Article  Google Scholar 

  • Vinnersten A, Bremer K (2001) Age and biogeography of major clades in Liliales. Am J Bot 88:1695–1703

    Article  PubMed  CAS  Google Scholar 

  • Vischi M, Arzenton F, De Paoli E, Paselli S, Tomat E, Olivieri AM (2006) Identification of wild species of sunflower by a specific plastid DNA sequence. Helia 29:11–18

    Article  Google Scholar 

  • Wang FZ, Tang J (1980) Lilium L. In: Flora Reipublicae Popularis Sinicae, vol 14. Science Press, Beijing, pp 116–157

  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Shinsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp 315–322

    Google Scholar 

  • Wilson EH (1925) The Lilies of Eastern Asia: a monograph. Dulau, London

    Google Scholar 

  • Xie XY, Gu ZJ, Wu QA (1992) Cytological studies of the genus Nomocharis and its related genera. Acta Phytotax Sin 30:487–497

    Google Scholar 

  • Yao H, Song JY, Ma XY, Liu C, Li Y, Xu HX, Han JP, Duan LS, Chen SL (2009) Identification of Dendrobium species by a candidate DNA barcode sequence: the chloroplast psbA-trnH intergenic region. Planta Med 75:667–669

    Article  PubMed  CAS  Google Scholar 

  • Zhang DF, Li FQ, Bian JM (2000) Eco-environmental effects of the Qinghai-Tibet Plateau uplift during the Quaternary in China. Environ Geol 39:1352–1358

    Article  Google Scholar 

  • Zhang JM, Wang JX, Xia T, Zhou SL (2009) DNA barcoding: species delimitation in tree peonies. Sci China Ser C 52:568–578

    Article  CAS  Google Scholar 

  • Zhang YH, Volis S, Sun H (2010) Chloroplast phylogeny and phylogeography of Stellera chamaejasme on the Qinghai-Tibet Plateau and in adjacent regions. Mol Phylogenet Evol 57:1162–1172

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

The authors thank anonymous reviewers and Professor Jie-mei Xu for valuable suggestions on improvement of the manuscript as well as Hai-feng Wang at the Graduate University of the Chinese Academy of Sciences for assistance with obtaining primary literature sources. This work was supported by the National Natural Science Foundation of China (31100161), the Doctoral Fund of the Ministry of Education of China (20090181110064), the Basic Research Program from the Ministry of Science and Technology of China (grant no. 2007FY110100), and the Research Fund for the Large-scale Scientific Facilities of the Chinese Academy of Sciences (2009-LSF-GBOWS-01).

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Correspondence to Xing-Jin He.

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Gao, YD., Hohenegger, M., Harris, A. et al. A new species in the genus Nomocharis Franchet (Liliaceae): evidence that brings the genus Nomocharis into Lilium . Plant Syst Evol 298, 69–85 (2012). https://doi.org/10.1007/s00606-011-0524-1

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