Abstract
Protocatechuate 3,4-dioxygenase (P34O), which is isolated from Rhizobium sp. LMB-1, catalyzes the ring cleavage step in the metabolism of aromatic compounds, and has great potential for environmental bioremediation. However, its structure is very sensitive to different environmental factors, which weaken its activity. Immobilization of the enzyme can improve its stability, allow reusability, and reduce operation costs. In this work, the relative molecular mass of the native P34O enzyme was determined to be 500 kDa by gel filtration chromatography on Sephadex G-200, and the enzyme was immobilized onto (3-aminopropyl) triethoxysilane-modified Fe3O4 nanoparticles (NPs) by the glutaraldehyde method. The optimum pH of immobilized and free P34O was unaffected, but the optimum temperature of immobilized P34O increased from 60 to 70 °C, and the thermal stability of immobilized P34O was better than that of the free enzyme and showed higher enzymatic activity at 60 and 70 °C. In addition, with the exception of Fe3+, most metal ions and organic chemicals could not improve the activity of free and immobilized P34O. The kinetic parameters of the immobilized P34O were higher than those of the free enzyme, and immobilized P34O on Fe3O4 NPs could be reused ten times without a remarkable decrease in enzymatic activity.
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Abbreviations
- P34O:
-
Protocatechuate 3,4-dioxygenase
- Fe3O4 NPs:
-
Fe3O4 nanoparticles
- PAEs:
-
Phthalate esters
- 3-APTES:
-
(3-Aminopropyl) triethoxysilane
- Ms:
-
Magnetization
- VSM:
-
Vibrating sample magnetometer
- XRD:
-
X-ray diffraction
- TGA:
-
Thermogravimetric analysis
- TSB:
-
Tryptone soya broth
- MSM:
-
Minimum salt medium
- PBS:
-
Phosphate-buffered saline
- SDS–PAGE:
-
Sodium dodecyl sulfate–polyacrylamide gel electrophoresis
- PCA:
-
Protocatechuic acid
- JCPDS:
-
Joint Committee on Powder Diffraction Standards
- bp:
-
Base pair
References
Tang, W. J., Zhang, L. S., Fang, Y., Zhou, Y., & Ye, B. C. (2016). Biodegradation of phthalate esters by newly isolated Rhizobium sp LMB-1 and its biochemical pathway of di-n-butyl phthalate. Journal of Applied Microbiology, 121, 177–186.
Fujisawa, H., & Hayaishi, O. (1968). Protocatechuate 3,4-dioxygenase. I. Crystallization and characterization. Journal of Biological Chemistry, 243, 2673–2681.
Durham, D., & Ornston, L. N. (1980). Homologous structural genes and similar induction patterns in Azotobacter spp. and Pseudomonas spp. Journal of Bacteriology, 143, 834–840.
Whittaker, J. W., Lipscomb, J. D., Kent, T. A., & Münck, E. (1984). Brevibacterium fuscum protocatechuate 3,4-dioxygenase. Purification, crystallization, and characterization. Journal of Biological Chemistry, 259, 4466–4475.
Pujar, B. G., & Ribbons, D. W. (1983). Purification of protocatechuate 3,4-dioxygenase from Pseudomonas fluorescens PHK by affinity chromatography. Indian Journal of Biochemistry & Biophysics, 20, 112–114.
Das, R., Abd Hamid, S. B., & Annuar, M. S. M. (2016). Highly efficient and stable novel nanobiohybrid catalyst to avert 3,4-dihydroxybenzoic acid pollutant in water. Scientific Reports, 6, 33572–33582.
Suma, Y., Kim, D., Lee, J., Park, K., Kim, H. (2012) Degradation of catechol by immobilized hydroxyquinol 1, 2-dioxygenase (1, 2-HQD) onto single-walled carbon nanotubes. Proceedings of the International Conference on Chemical, Environmental Science and Engineering (ICEEBS’12).
Brady, D., & Jordaan, J. (2009). Advances in enzyme immobilisation. Biotechnology Letters, 31, 1639–1650.
Fang, G., Chen, H. G., Zhang, Y. P., & Chen, A. Q. (2016). Immobilization of pectinase onto Fe3O4@SiO2-NH2 and its activity and stability. International Journal of Biological Macromolecules, 88, 189–195.
White, L. D., & Tripp, C. P. (2000). Reaction of (3-aminopropyl) dimethylethoxysilane with amine catalysts on silica surfaces. Journal of Colloid & Interface Science, 232, 400–407.
Shen, X. C., Fang, X. Z., Zhou, Y. H., & Liang, H. (2004). Synthesis and characterization of 3-aminopropyltriethoxysilane-modified superparamagnetic magnetite nanoparticles. Chemistry Letters, 33, 1468–1469.
Bruce, I. J., & Sen, T. (2005). Surface modification of magnetic nanoparticles with alkoxysilanes and their application in magnetic bioseparations. Langmuir, 21, 7029–7035.
Yang, Y., Bai, Y., Li, Y., Lei, L., Cui, Y., & Xia, C. (2008). Preparation and application of polymer-grafted magnetic nanoparticles for lipase immobilization. Journal of Magnetism & Magnetic Materials, 320, 2350–2355.
Moritake, S., Taira, S., Ichiyanagi, Y., Morone, N., Song, S. Y., Hatanaka, T., Yuasa, S., & Setou, M. (2007). Functionalized nano-magnetic particles for an in vivo delivery system. Journal of Nanoscience & Nanotechnology, 7, 937–944.
Won, K., Kim, S., Kima, K. J., Park, H. W., & Moon, S. J. (2005). Optimization of lipase entrapment in Ca-alginate gel heads. Process Biochemistry, 40, 2149–2154.
Girigowda, K., & Mulimani, V. H. (2006). Hydrolysis of galacto-oligosaccharides in soymilk by kappa-carrageenan-entrapped alpha-galactosidase from Aspergillus oryzae. World Journal of Microbiology & Biotechnology, 22, 437–442.
Bradford, M. M. (1976). A rapid method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry, 72, 248–254.
Zylstra, G. J., Olsen, R. H., & Ballou, D. P. (1989). Genetic organization and sequence of the Pseudomonas cepacia genes for the alpha and beta subunits of protocatechuate 3,4-dioxygenase. Journal of Bacteriology, 171, 5915–5921.
Petersen, E., Zuegg, J., Ribbons, D. W., & Schwab, H. (1996). Molecular cloning and homology modeling of protocatechuate 3,4-dioxygenase from Pseudomonas marginata. Microbiological Research, 151, 359–370.
Zhang, Q. K., Kang, J. Q., Yang, B., Zhao, L. Z., Hou, Z. S., & Tang, B. (2016). Immobilized cellulase on Fe3O4 nanoparticles as a magnetically recoverable biocatalyst for the decomposition of corncob. Chinese Journal of Catalysis, 37, 389–397.
Guzik, U., Hupert-Kocurek, K., Krysiak, M., & Wojcieszyńska, D. (2014). Degradation potential of protocatechuate 3,4-dioxygenase from crude extract of Stenotrophomonas maltophilia strain KB2 immobilized in calcium alginate hydrogels and on glyoxyl agarose. BioMed Research International, 2014, 138768–138775.
Chen, Y. P., Dilworth, M. J., & Glenn, A. R. (1984). Aromatic metabolism in Rhizobium trifolii—protocatechuate 3,4-dioxygenase. Archives of Microbiology, 138, 187–190.
Iwagami, S. G., Yang, K., & Davies, J. (2000). Characterization of the protocatechuic acid catabolic gene cluster from Streptomyces sp. strain 2065. Applied and Environmental Microbiology, 66, 1499–1508.
Sim, H. W., Jung, M. J., & Yong, K. C. (2013). Purification and characterization of protocatechuate 3,4-dioxygenase from Pseudomonas pseudoalcaligenes KF707. Applied Biological Chemistry, 56, 401–408.
Song, C. F., Sheng, L. Q., & Zhang, X. B. (2012). Preparation and characterization of a thermostable enzyme (Mn-SOD) immobilized on supermagnetic nanoparticles. Applied Microbiology and Biotechnology, 96, 123–132.
Rafiee-Pour, H. A., Noorbakhsh, A., Salimi, A., & Ghourchian, H. (2010). Sensitive superoxide biosensor based on silicon carbide nanoparticles. Electroanalysis, 22, 1599–1606.
Salimi, A., Noorbakhsh, A., Rafiee-Pour, H. A., Ghourchian, H. (2011). Direct voltammetry of copper, zinc-superoxide dismutase immobilized onto electrodeposited nickel oxide nanoparticles: fabrication of amperometric superoxide biosensor. Electroanalysis, 23(3), 683–691.
Falahati, M., Ma’mani, L., Saboury, A. A., Shafiee, A., Foroumadi, A., & Badiei, A. R. (2011). Aminopropyl-functionalized cubic Ia3d mesoporous silica nanoparticle as an efficient support for immobilization of superoxide dismutase. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1814, 1195–1202.
Berger, J. L., Lee, B. H., & Lacroix, C. (1995). Identification of new enzyme activities of several strains of Thermus species. Applied Microbiology and Biotechnology, 44, 81–87.
Durham, D. R., Stirling, L. A., Ornston, L. N., & Perry, J. J. (1980). Intergeneric evolutionary homology revealed by the study of protocatechuate 3,4-dioxygenase from Azotobacter vinelandii. Biochemistry, 19, 149–155.
Wang, F., Guo, C., Liu, H. Z., & Liu, C. Z. (2008). Immobilization of Pycnoporus sanguineus laccase by metal affinity adsorption on magnetic chelator particles. Journal of Chemical Technology and Biotechnology, 83, 97–104.
Atacan, K., Cakiroglu, B., & Ozacar, M. (2016). Improvement of the stability and activity of immobilized trypsin on modified Fe3O4 magnetic nanoparticles for hydrolysis of bovine serum albumin and its application in the bovine milk. Food Chemistry, 212, 460–468.
Farrell, J. R., Niconchuk, J. A., Renehan, P. R., Higham, C. S., Yoon, E., Andrews, M. V., Shaw, J. L., Cetin, A., Engle, J., & Ziegler, C. J. (2014). New diamino-diheterophenol ligands coordinate iron(III) to make structural and functional models of protocatechuate 3,4-dioxygenase. Dalton Transactions, 43, 6610–6613.
Ohlendorf, D. H., Lipscomb, J. D., & Weber, P. C. (1988). Structure and assembly of protocatechuate 3,4-dioxygenase. Nature, 336, 403–405.
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This research was supported by National Natural Science Foundation of China (31401592).
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Zhang, LS., Fang, Y., Zhou, Y. et al. Improvement of the Stabilization and Activity of Protocatechuate 3,4-Dioxygenase Isolated from Rhizobium sp. LMB-1 and Immobilized on Fe3O4 Nanoparticles. Appl Biochem Biotechnol 183, 1035–1048 (2017). https://doi.org/10.1007/s12010-017-2481-9
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DOI: https://doi.org/10.1007/s12010-017-2481-9