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Globisporangium oryzicola sp. nov., causing poor seedling establishment of directly seeded rice

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Abstract

A new species, Globisporangium oryzicola, was isolated from directly seeded rice seedlings, and from soils of paddy fields and an uncultivated field. Despite their different origins, five of the seven isolates studied caused poor seedling establishment of rice in a laboratory inoculation experiment. The species is characterized by oogonia with smooth-walled or sometimes one projection, with one to two antheridia, and aplerotic oospores. Hyphal swellings were rarely observed. Phylogenetic analyses based on the internal transcribed spacer region of the ribosomal RNA gene and mitochondrial cytochrome c oxidase subunit 1 and 2 genes confirmed that the species differed from other Globisporangium species. This novel species is described and illustrated in detail.

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References

  • Bala K, Robideau GP, Lévesque A, de Cock AWAM, Abad ZG, Lodhi AM, Shahzad S, Ghaffar A, Coffey MD (2010) Phytopythium Abad, de Cock, Bala, Robideau, Lodhi and Lévesque, gen. nov. and Phytopythium sindhum Lodhi, Shahzad & Lévesque, sp. nov. Persoonia 24:136–137

    Google Scholar 

  • Edson HA (1915) Rheosporangium aphanidermatum, a new genus and species of fungus parasitic on sugar beets and radishes. J Agric Res 4:279–292

    Google Scholar 

  • Ellis ML, Paul PA, Dorrance AE, Broders KD (2012) Two new species of Pythium, P. schmitthenneri and P. selbyi pathogens of corn and soybean in Ohio. Mycologia 104:477–487. doi:10.3852/11-162

    Article  CAS  PubMed  Google Scholar 

  • Fischer A (1892) Phycomyctes. Rabenhorst, Kryptogamenflora 1:505

    Google Scholar 

  • Garzón CD, Yánez JM, Moorman GW (2007) Pythium cryptoirregulare, a new species within the P. irregulare complex. Mycologia 99:291–301. doi:10.3852/mycologia.99.2.291

    Article  PubMed  Google Scholar 

  • Hoshikawa K (1989) The growing rice plant: an anatomical monograph. Nobunkyo, Tokyo, pp 1–310

    Google Scholar 

  • Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874. doi:10.1093/molbev/msw054

    Article  CAS  PubMed  Google Scholar 

  • Lévesque CA, de Cock AWAM (2004) Molecular phylogeny and taxonomy of the genus Pythium. Mycol Res 108:1363–1383. doi:10.1017/S0953756204001431

    Article  PubMed  Google Scholar 

  • Martin FN (2000) Phylogenetic relationships among some Pythium species inferred from sequence analysis of the mitochondrially encoded cytochrome oxidase II gene. Mycologia 95:269–284. doi:10.2307/3761428

    Article  Google Scholar 

  • Miller PM (1955) V-8 juice agar as a general purpose medium for fungi and bacteria. Phytopathology 45:461–462

    Google Scholar 

  • Möller EM, Bahnweg G, Sandermann H, Geiger HH (1992) A simple and efficient protocol for isolation of high molecular weight DNA from Filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Res 20:6115–6116. doi:10.1093/nar/20.22.6115

    Article  PubMed  PubMed Central  Google Scholar 

  • Morita Y, Tojo M (2007) Modifications of PARP medium using fluazinam, miconazole, and nystatin for detection of Pythium spp. in soil. Plant Dis 91:1591–1599. doi:10.1094/PDIS-91-12-1591

    Article  CAS  Google Scholar 

  • Pringsheim N (1858) Beiträge zur Morphology and Systematik der Algen. 2. Die Saprolegníeen. Jb Wíss Bot 1:284–306

    Google Scholar 

  • Robideau GP, De Cock AWAM, Coffey MD, Voglmayr H, Brouwer H, Bala K, Chitty DW, Desaulniers N, Eggertson QA, Gachon CMM, Hu CH, Kupper FC, Rintoul TL, Sarhan E, Verstappen ECP, Zhang Y, Bonants PJM, Ristaino JB, Lévesque CA (2011) DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer. Mol Ecol Resour 11:1002–1011. doi:10.1111/j.1755-0998.2011.03041.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schröter J (1893) Pythiaceae. Engler Prantl Nat Pfl Fam 1:104–105

    Google Scholar 

  • Toda T, Iwase A, Fuji S, Furuya H (2015) Widespread occurrence of Pythium arrhenomanes pathogenic to rice seedlings around Japanese rice fields. Plant Dis 99:1823–1831. doi:10.1094/PDIS-01-15-0124-RE

    Article  Google Scholar 

  • Uzuhashi S, Tojo M, Kobayashi S, Tokura K, Kakishima M (2009) Pythium apinafurcum sp. nov.: its morphology, molecular phylogeny, and infectivity for plants. Mycoscience 50:281–290. doi:10.1007/s10267-009-0486-0

    Article  CAS  Google Scholar 

  • Uzuhashi S, Tojo M, Kakishima M (2010) Phylogeny of the genus Pythium and description of new genera. Mycoscience 51:337–365. doi:10.1007/s10267-010-0046-7

    Article  Google Scholar 

  • Uzuhashi S, Okada G, Ohkuma M (2015) Four new Pythium species from aquatic environments in Japan. Anton Leeuw J Microb 107:375–391. doi:10.1007/s10482-014-0336-8

    Article  Google Scholar 

  • Van Buyten E, Höfte M (2013) Pythium species from rice roots differ in virulence, host colonization and nutritional profile. BMC Plant Biol 13:203. doi:10.1186/1471-2229-13-203

    Article  PubMed  PubMed Central  Google Scholar 

  • van der Plaats-Niterink AJ (1981) Monograph of the genus Pythium. Stud Mycol 21:1–242

    Google Scholar 

  • White TJ, Bruns T, Lee SB, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White T (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp 315–322

    Google Scholar 

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Correspondence to Shihomi Uzuhashi.

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Uzuhashi, S., Hata, K., Matsuura, S. et al. Globisporangium oryzicola sp. nov., causing poor seedling establishment of directly seeded rice. Antonie van Leeuwenhoek 110, 543–552 (2017). https://doi.org/10.1007/s10482-016-0822-2

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  • DOI: https://doi.org/10.1007/s10482-016-0822-2

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