Abstract
Asthma, allergic rhinitis (AR) and atopic dermatitis also called eczema are allergic co-morbidites, which are likely to depend on pleiotropic genetic effects as well as on specific genetic factors. After a previous genome-wide linkage screen conducted for asthma and AR in a sample of 295 French EGEA families ascertained through asthmatic subjects, the aim here was to search for genetic factors involved in eczema and more particularly the ones shared by the three allergic diseases using the same EGEA data. In this sake, eczema and phenotypes of “allergic disease” accounting for the joint information on the presence/absence of the three diseases were examined by linkage analyses using the maximum likelihood binomial method. A fine mapping was carried out in regions detected for potential linkage, followed by association studies using the family-based association test (FBAT). Evidence for linkage to 11p14 region was shown for “allergic disease” and eczema. Linkage was also indicated between eczema and 5q13 and between “allergic disease” and both 5p15 and 17q21 regions. Fine mapping supported the evidence of linkage to 11p14 and FBAT analyses showed the association between “allergic disease” and a marker located at the linkage peak on 11p14. Further investigations in this region will allow identifying genetic factor(s) which could have pleiotropic effect in the three allergic diseases.
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Abel L, Muller-Myhsok B (1998) Robustness and power of the maximum-likelihood-binomial and maximum-likelihood-score methods, in multipoint linkage analysis of affected-sibship data. Am J Hum Genet 63(2):638–647
Abel L, Alcais A, Mallet A (1998) Comparison of four sib-pair linkage methods for analyzing sibships with more than two affecteds: interest of the binomial maximum likelihood approach. Genet Epidemiol 15(4):371–390
Ahmad-Nejad P, Mrabet-Dahbi S, Breuer K, Klotz M, Werfel T, Herz U, Heeg K, Neumaier M, Renz H (2004) The toll-like receptor 2 R753Q polymorphism defines a subgroup of patients with atopic dermatitis having severe phenotype. J Allergy Clin Immunol 113(3):565–567
Alcais A, Philippi A, Abel L (1999) Genetic model-free linkage analysis using the maximum-likelihood-binomial method for categorical traits. Genet Epidemiol 17(Suppl 1):467–472
Altmuller J, Seidel C, Lee YA, Loesgen S, Bulle D, Friedrichs F, Jellouschek H, Kelber J, Keller A, Schuster A, Silbermann M, Wahlen W, Wolff P, Schlenvoigt G, Ruschendorf F, Nurnberg P, Wjst M (2005) Phenotypic and genetic heterogeneity in a genome-wide linkage study of asthma families. BMC Pulm Med 5:1
Arkwright PD, Chase JM, Babbage S, Pravica V, David TJ, Hutchinson IV (2001) Atopic dermatitis is associated with a low-producer transforming growth factor beta(1) cytokine genotype. J Allergy Clin Immunol 108(2):281–284
Bouzigon E, Dizier MH, Krähenbühl C, Lemainque A, Annesi-Maesano I, Betard C, Bousquet J, Charpin D, Gormand F, Guilloud-Bataille M, Just J, Le Moual N, Maccario J, Matran R, Neukirch F, Oryszczyn MP, Paty E, Pin I, Rosenberg-Bourgin M, Vervloet D, Kauffmann F, Lathrop M, Demenais F (2004) Clustering patterns of LOD scores for asthma-related phenotypes revealed by a genome-wide screen in 295 French EGEA families. Hum Mol Genet 13:3103–3113
Bouzigon E, Demenais F, Kauffmann F (2005) Genetics of asthma and atopy: how many genes? Bull Acad Natl Med 189(7):1435–1448
Bradley M, Söderhäll C, Luthman H, Wahlgren CF, Kockum I, Nordenskjold M (2002) Susceptibility loci for atopic dermatitis on chromosomes 3, 13, 15, 17 and 18 in a Swedish population. Hum Mol Genet 11(13):1539–1548
Bu LM, Bradley M, Söderhall C, Wahlgren CF, Kockum I, Nordenskjöld M (2005) Genome-wide linkage analysis of allergic rhinoconjunctivitis in a Swedish population. Clin Exp Allergy 36:204–210
Collaborative Study on the Genetics of Asthma (CSGA) (1997) A genome-wide search for asthma susceptibility loci in ethnically diverse populations. Nat Genet 15:389–392
Cookson WO, Ubhi B, Lawrence R, Abecasis GR, Walley AJ, Cox HE, Coleman R, Leaves NI, Trembath RC, Moffatt MF, Harper JI (2001) Genetic linkage of childhood atopic dermatitis to psoriasis susceptibility loci. Nat Genet 27(4):372–373
Cox HE, Moffatt MF, Faux JA, Walley AJ, Coleman R, Trembath RC, Cookson WO, Harper JI (1998) Association of atopic dermatitis to the beta subunit of the high affinity immunoglobulin E receptor. Br J Dermatol 138(1):182–187
Dizier MH, Besse-Schmittler C, Guilloud-Bataille M, Annesi-Maesano I, Boussaha M, Bousquet J Charpin D, Degioanni A, Gormand F, Grimfeld A, Hochez J, Hyne G, Lockhart A, Luillier-Lacombe G, Matran R, Meunier F, Neukirch F, Pacheco Y, Parent V, Paty E, Pin I, Pison C, Scheinmann P, Thobie N, Vervloet D, Kauffmann F, Feingold J, Lathrop M, Demenais F (2000) Genome screen for asthma and related phenotypes in the French EGEA study. Am J Respir Crit Care Med 162:1812–1818
Dizier MH, Bouzigon E, Guilloud-Bataille M, Betard C, Bousquet J, Charpin D, Gormand F, Hochez J, Just J, Lemainque A, Le Moual N, Matran R, Neukirch F, Oryszczyn MP, Paty E, Pin I, Vervloet D, Kauffmann F, Lathrop M, Demenais F, Annesi-Maesano I (2005) Genome screen in the French EGEA Study: detection of linked regions shared or not shared by allergic rhinitis and asthma. Genes Immun 6:95–102
Dizier MH, Bouzigon E, Guilloud-Bataille M, Genin E, Oryszczyn MP, Annesi-Maesano I, Demenais F (2007) Evidence for a locus in 1p31 region specifically linked to the co-morbidity of asthma and allergic rhinitis in the EGEA Study. Hum Hered 63(3–4):162–167
Dold S, Wjst M, von Mutius E, Reitmeir P, Stiepel E (1992) Genetic risk for asthma, rhinitis, and atopic dermatitis. Arch Dis Child 67(8):1018–1022
Ferreira MA, Visscher PM, Martin NG, Duffy DL (2006) A simple method to localise pleiotropic susceptibility loci using univariate linkage analyses of correlated traits. Eur J Hum Genet 14(8):953–962
Folster-Holst R, Moises HW, Yang L, Fritsch W, Weissenbach J, Christophers E (1998) Linkage between atopy and the IgE high-affinity receptor gene at 11q13 in atopic dermatitis families. Hum Genet 102(2):236–239
Guillet G, Guillet MH (1992) Natural history of sensitizations in atopic dermatitis. A 3-year follow-up in 250 children: food allergy and high risk of respiratory symptoms. Arch Dermatol 128(2):187–192
Haagerup A, Bjerke T, Schoitz PO, Binderup HG, Dahl R, Kruse TA (2001) Allergic rhinitis—a total genome-scan for susceptibility genes suggests a locus on chromosome 4q24-q27. Eur J Hum Genet 9(12):945–952
Haagerup A, Bjerke T, Schiotz PO, Dahl R, Binderup HG, Tan Q, Kruse TA (2004) Atopic dermatitis—a total genome-scan for susceptibility genes. Acta Derm Venereol 84(5):346–352
He JQ, Chan-Yeung M, Becker AB, Dimich-Ward H, Ferguson AC, Manfreda J, Watson WT, Sandford AJ (2003) Genetic variants of the IL13 and IL4 genes and atopic diseases in at-risk children. Genes Immun 4(5):385–389
Horvath S, Xu X, Laird NM (2001) The family based association test method: strategies for studying general genotype–phenotype associations. Eur J Hum Genet 9(4):301–306
Johansson SGO, Bieber T, Dahl R, Friedmann PS, Lanier Q, Lockey RF, Motala C, Ortega Martell JAO, Platts-Mills TAE, Ring J, Thien F, Van Cauwenberge P, Williams HC (2004) Revised nomenclature of allergy for global use: report of the nomenclature review committee of the World Allergy Organization, October 2003. J Allergy Clin Immunol 113:832–836
Kauffmann F, Dizier MH, Annesi-Maesano I, Bousquet J, Charpin D, Demenais F, Ecochard D, Feingold J, Gormand F, Grimfeld A, Lathrop M, Matran R, Neukirch F, Paty E, Pin I, Pison C, Scheinmann P, Vervloet D, Lockhart A (1999) EGEA (epidemiological study on the genetics and environment of asthma, bronchial hyperresponsiveness and atopy)—descriptive characteristics. Clin Exp Allergy 29(Suppl 4):17–21
Kauffmann F, Annesi-Maesano I, Liard R, Paty E, Faraldo B, Neukirch F, Dizier MH (2002) Construction et validation d’un questionnaire en épidémiologie respiratoire. L’exemple du questionnaire de l’étude épidémiologique des facteurs génétiques et environnementaux de l’asthme, l’hyperréactivité bronchique et de l’atopie (EGEA). Rev Mal Respir 19(3):323–333
Koppelman GH, Stine OC, Xu J, Howard TD, Zheng SL, Kauffman HF, Bleecker ER, Meyers DA, Postma DS (2002) Genome-wide search for atopy susceptibility genes in Dutch families with asthma. J Allergy Clin Immunol 109(3):498–506
Kullo IJ, de Andrade M, Boerwinkle E, McConnell JP, Kardia SL, Turner ST (2005) Pleiotropic genetic effects contribute to the correlation between HDL cholesterol, triglycerides, and LDL particle size in hypertensive sibships. Am J Hypertens 18:99–103
Kruglyak L, Daly MJ, Reeve-Daly MP, Lander ES (1996) Parametric and nonparametric linkage analysis: a unified multipoint approach. Am J Hum Genet 58:1347–1363
Lake SL, Blacker D, Laird NM (2000) Family-based tests of association in the presence of linkage. Am J Hum Genet 67(6):1515–1525
Lander E, Kruglyak L (1995) Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat Genet 11:241–247
Lee YA, Wahn U, Kehrt R, Tarani L, Businco L, Gustafsson D, Andersson F, Oranje AP, Wolkertstorfer A, van Berg A, Hoffmann U, Kuster W, Wienker T, Ruschendorf F, Reis A (2000) A major susceptibility locus for atopic dermatitis maps to chromosome 3q21. Nat Genet 26(4):470–473
Lange K, Cantor R, Horvath S, Perola M, Sabatti C, Sinsheimer JS, Sobel E (2001) Mendel version 4.0: a complete package for the exact genetic analysis of discrete traits in pedigree and population data sets. Am J Hum Genet 69:A1886
Liu X, Nickel R, Beyer K, Wahn U, Ehrlich E, Freidhoff LR, Bjorksten B, Beaty TH, Huang SK (2000) An IL13 coding region variant is associated with a high total serum IgE level and atopic dermatitis in the German multicenter atopy study (MAS-90). J Allergy Clin Immunol 106:167–170
Majumder PP, Pal N (1987) Nonrandom segregation: uniformly most powerful test and related considerations. Genet Epidemiol 4(4):277–287
Marlow AJ, Fisher SE, Francks C, MacPhie IL, Cherny SS, Richardson AJ, Talcott JB, Stein JF, Monaco AP, Cardon LR (2003) Use of multivariate linkage analysis for dissection of a complex cognitive trait. Am J Hum Genet 72: 561–570
Nickel RG, Casolaro V, Wahn U, Beyer K, Barnes KC, Plunkett BS, Freidhoff LR, Sengler C, Plitt JR, Schleimer RP, Caraballo L, Naidu RP, Levett PN, Beaty TH, Huang SK (2000) Atopic dermatitis is associated with a functional mutation in the promoter of the C-C chemokine RANTES. J Immunol 164(3):1612–1616
Novembre E, Cianferoni A, Lombardi E, Bernardini R, Pucci N, Vierucci A (2001) Natural history of ‘intrinsic’ atopic dermatitis. Allergy 56:452–453
Ober C, Tsalenko A, Parry R, Cox NJ (2000) A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. Am J Hum Genet 67(5):1154–1162
O’Connell J, Weeks DE (1998) PedCheck: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 63:259–266
Postma DS, Meyers DA, Jongepier H, Howard TD, Koppelman GH, Bleecker ER (2005) Genomewide screen for pulmonary function in 200 families ascertained for asthma. Am J Respir Crit Care Med 172:446–452
Satsangi J, Parkes M, Louis E, Hashimoto L, Kato N, Welsh K, Terwilliger JD, Lathrop GM, Bell JI, Jewell DP (1996) Two stage genome-wide search in inflammatory bowel disease provides evidence for susceptibility loci on chromosomes 3, 7 and 12. Nat Genet 14(2):199–202
Spielman RS, Ewens WJ (1998) A sibship test for linkage in the presence of association: the sib transmission/disequilibrium test. Am J Hum Genet 62(2):450–458
Tsunemi Y, Saeki H, Nakamura K, Sekiya T, Hirai K, Kakinuma T, Fujita H, Asano N, Tanida Y, Wakugawa M, Torii H, Tamaki K (2002) Interleukin-13 gene polymorphism G4257A is associated with atopic dermatitis in Japanese patients. J Dermatol Sci 30(2):100–107
The Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14.000 cases of seven common diseases and 3000 shared controls. Nature 447:661–678
Williams JT, Begleiter H, Porjesz B, Edenberg HJ, Foroud T, Reich T, Goate A, Van Eerdewegh P, Almasy L, Blangero J (1999) Joint multipoint linkage analysis of multivariate qualitative and quantitative traits. II. Alcoholism and event-related potentials. Am J Hum Genet 65:1148–1160
Wills-Karp M, Ewart SL (2004) Time to draw breath: asthma-susceptibility genes are identified. Nat Genet 5:376–387
Wjst M for the German Asthma Genetics Group (1999) Specific IgE-one gene fits all? Clin Exp Allergy 29:S5–S10
Yokouchi Y, Shibasaki M, Noguchi E, Nakayama J, Ohtsuki T, Kamioka M, Yamakawa-Kobayashi K, Ito S, Takeda K, Ichikawa K, Nukaga Y, Matsui A, Hamaguchi H, Arinami T (2002) A genome-wide linkage analysis of orchard grass-sensitive childhood seasonal rhinitis in Japanese families. Genes Immun 3:9–13
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This work was partly supported by EU Framework Programme for Research, contract no. FOOD-CT-2004-506378, the GA2LEN project, Global Allergy and Asthma European Network.
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Guilloud-Bataille, M., Bouzigon, E., Annesi-Maesano, I. et al. Evidence for linkage of a new region (11p14) to eczema and allergic diseases. Hum Genet 122, 605–614 (2008). https://doi.org/10.1007/s00439-007-0439-7
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DOI: https://doi.org/10.1007/s00439-007-0439-7