Abstract
Small GTP-binding proteins of the Rab family are involved in the vesicular traffic inside eukaryotic cells. A gene library from the yeast Yarrowia lipolytica was screened with an oligonucleotide deduced from a highly conserved sequence in the Rab family. Four different genes were isolated. One of them, RYL1, was shown to be essential for cell viability. RYL1p displayed a high similarity with and tight phylogenetic relationships to SEC4p. When placed under the control of the GAL10 promoter, RYL1 was able to specifically relieve the thermosensitivity of a sec4–8 mutant of Saccharomyces cerevisiae. Therefore, it is proposed that RYL1 is a functional homologue of the S. cerevisiae SEC4 gene and is involved in the fusion of secretory vesicles with the plasma membrane in the general protein secretion pathway.
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References
Bacon RA, Salminen A, Ruohola H, Novick P, Ferro-Novick S (1989) The GTP-binding protein Ypt1 is required for transport in vitro: the Golgi apparatus is defective in ypt1 mutants. J Cell Biol 109: 1015–1022
Barbacid M (1987) Ras genes. Annu Rev Biochem 56:779–827
Beckerich JM, Lambert M, Gaillardin C (1994) LYC1 is the structural gene for lysine N-6-acetyl transferase in yeast. Curr Genet 25:24–29
Boeke JD, Trueheart J, Natsoulis G, Fink GR (1987) 5-fluoroorotic acid as a selective agent in yeast molecular genetics. In: Wu R, Grossman L (eds) Method Enzymol 154: 164–174
Bourne HR (1988) Do GTPases direct membrane traffic in secretion? Cell 53:669–671
Bourne HR, Sanders DA, McCormick F (1990) The GTPase superfamily: a conserved switch for diverse cell functions. Nature 348: 125–132
Brennwald P, Novick P (1993) Interactions of three domains distinguishing the Ras-related GTP-binding proteins Ypt1 and Sec4. Nature 362:560–563
Davidow LS, Kaczmarek FS, De Zeeuw JR, Conlon SW, Lauth MR, Pereira DA, Franke AE (1987a) The Yarrowia lipolytica LEU2 gene. Curr Genet 11:377–383
Davidow LS, O'Donnell MM, Kaczmarek FS, Pereira DA, De Zeeuw JR, Franke AE (1987b) Cloning and sequencing of the alkaline extracellular protease gene of Yarrowia lipolytica. J Bacteriol 169:4621–4629
Dessen P, Fondrat C, Valencien C, Mugnier C (1990) BISANCE: a french service for access to biomolecular sequence databases. CABIOS 6:355–356
Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequences and analysis programs for the VAX. Nucleic Acids Res 12:387–395
Dunn B, Stearns T, Botstein D (1993) Specificity domains distinguish the Ras-related GTPases Ypt1 and Sec4. Nature 362:563–565
Fournier P, Guyaneux L, Chasles M, Gaillardin C (1991) Scarcity of ars sequences isolated in a morphogenesis mutant of the yeast Yarrowia lipolytica. Yeast 7:25–36
Grand RJA, Owen D (1991) The biochemistry of ras p21. Biochem J 279:609–631
Goud B, Salminen A, Walworth NC, Novick PJ (1988) A GTP-binding protein required for secretion rapidly associates with secretory vesicles and the plasma membrane in yeast. Cell 53:753–768
Haubruck H, Prange R, Vorgias C, Gallwitz D (1989) The ras-related mouse ypt1 protein can functionally replace the YPT1 gene product in yeast. EMBO J 8:1427–1432
Haubruck H, Engelke U, Mertins P, Gallwitz D (1990) Structural and functional analysis of ypt2 an essential ras-related gene in the fission yeast S. pombe encoding a Sec4 protein homolog. EMBO J 9:1957–1990
Johnson DI, Pringle JR (1990) Molecular characterization of CDC42, a Saccharomyces cerevisiae gene involved in the development of cell polarity. J Cell Biol 111:143–152
Kunkel TA, Roberts JD, Zakour RA (1987) Rapid and efficient site-specific mutagenesis without phenotypic selection. In: Wu R, Grossman L (eds) Methods Enzymol 154:367–382
Nakano A, Muramatsu M (1989) A novel GTP-binding protein, Sarlp, is involved in transport from the endoplasmic reticulum to the Golgi apparatus. J Cell Biol 109:2677–2691
Pearson WR, Lipman DJ (1988) Improved tools for biological sequences comparison. Proc Natl Acad Sci USA 85:2444–2448
Ridley AJ, Hall A (1992) The small GTP-binding protein rho regulates the assembly of focal adhesions and actin stress fibers in response to growth factors. Cell 70:389–399
Rossi G, Jiang Y, Newman AP, Ferro-Novick S (1991) Dependence of Ypt1 and Sec4 membrane attachment on Bet2. Nature 351: 158–161
Rothman JE, Orci L (1992) Molecular dissection of the secretory pathway. Nature 355:409–415
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Salminen A, Novick P (1987) A ras-like protein is required for a post-Golgi event in yeast secretion. Cell 49:527–538
Schmitt HD, Puzicha M, Gallwitz D (1988) Study of a temperature-sensitive mutant of the ras-related YPT1 gene product in yeast suggests a role in the regulation of the intracellular calcium. Cell 53:635–647
Segev N, Mulholland J, Botstein D (1988) The yeast GTP-binding Ypt1 protein and a mammalian counterpart are associated with the secrection machinery. Cell 52:915–924
Sherman F, Fink GR, Hicks JB (1983) Methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Touchot N, Chardin P, Tavitian A (1987) Four additional members of the ras gene family isolated by an oligonucleotide strategy: molecular cloning of the YPT1-related cDNAs from a rat brain library. Proc Natl Acad Sci USA 84:8210–8214
Treton BY, Le Dall MT, Gaillardin CM (1992) Complementation of a Saccharomyces cerevisiae acid phosphatase mutation by a genomic sequence from the yeast Yarrowia lipolytica identifies a new phosphatase. Curr Genet 22:345–355
Valencia A, Chardin P, Wittinghofer A, Sander C (1991) The ras protein family: evolutionary tree and role of conserved amino acids. Biochemistry 30:4637–4648
Wagner P, Molenaar CM, Rauh AJ, Brokel R, Schmidt HD, Gallwitz D (1987) Biochemical properties of the ras-related YPT1 protein in yeast: a mutational analysis. EMBO J 6:2373–2379
Walworth NC, Goud B, Kastan-Kabcenell A, Novick P (1989) Mutational analysis of SEC4 suggest a cyclical mechanism for the regulation of vesicular traffic. EMBO J 8:1685–1693
Xuan JW, Fournier P, Gaillardin C (1988) Cloning of the LYS5 gene encoding saccharopine dehydrogenase from the yeast Yarrowia lipolytica by target integration. Curr Genet 14:15–21
Xuan JW, Fournier P, Declerck N, Chasles M, Gaillardin C (1990) Overlapping reading frames at the LYS5 locus in the yeast Yarrowia lipolytica. Mol Cell Biol 10:4795–4806
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Pertuiset, B., Beckerich, JM. & Gaillardin, C. Molecular cloning of Rab-related genes in the yeast Yarrowia lipolytica. Analysis of RYL1, an essential gene encoding a SEC4 homologue. Curr Genet 27, 123–130 (1995). https://doi.org/10.1007/BF00313425
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DOI: https://doi.org/10.1007/BF00313425