Abstract
The concept of Adverse Outcome Pathways (AOPs) arose as a means of addressing the challenges associated with establishing relationships between high-throughout (HT) in vitro dose response data and in vivo biological outcomes. However, AOP development has also been met with challenges of its own, such as the time, effort, and expertise necessary to achieve a scientifically sound construct able to support ecotoxicology and human health risk assessment. Thus, a staged development process has been developed to match the information content of an AOP with the decision context in which it will be used. This approach allows effort to be spent on detailed evidence evaluation and quantitative assessment of the dose-response characteristics for those AOPs where this level of confidence and precision is needed. In addition, through advances in computational analytical methodologies that integrate HT data (e.g., transcriptomic data) with traditional toxicology information spanning a broad chemical and biological space, computationally predicted AOPs can be rapidly generated to help accelerate the curation of AOPs. AOPs are chemical agnostic thereby allowing a single AOP to be coupled with in vitro dose-response information from a variety of chemicals. To predict an in vivo outcome, however, exposure and pharmacokinetic characteristics (i.e., absorption, metabolism, distribution, and elimination) must be considered. As with the staged development process for AOPs, it is possible to develop ADME predictions in a tiered manner such that lower tiers provide qualitative or semi-quantitative predictions when data is lacking, and higher tiers provide quantitative predictions with increasing confidence when data is abundant. Tiered approaches to AOP development and ADME predictions provide a mechanism for using AOPs, with chemical-specific exposure and pharmacokinetic considerations, for risk assessment both in data poor and data rich scenarios. They also provide a natural mechanism for identifying areas of research that would have the highest impact on risk-based decision making by highlighting AOPs and/or ADME predictions that are insufficient to address the decision context in which they could be used.
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References
AbdulHameed MDM, Tawa GJ, Kumar K et al (2014) Systems level analysis and identification of pathways and networks associated with liver fibrosis. PLoS One 9:e112193. doi:10.1371/journal.pone.0112193
Abt E, Rodricks JV, Levy JI et al (2010) Science and decisions: advancing risk assessment. Risk Anal 30:1028–1036. doi:10.1111/j.1539-6924.2010.01426.x
Alves VM, Muratov E, Fourches D et al (2015a) Predicting chemically-induced skin reactions. Part II: QSAR models of skin permeability and the relationships between skin permeability and skin sensitization. Toxicol Appl Pharmacol 284:273–280. doi:10.1016/j.taap.2014.12.013
Alves VM, Muratov E, Fourches D et al (2015b) Predicting chemically-induced skin reactions. Part I: QSAR models of skin sensitization and their application to identify potentially hazardous compounds. Toxicol Appl Pharmacol 284:262–272. doi:10.1016/j.taap.2014.12.014
Andersen ME, Krewski D (2009) Toxicity testing in the 21st century: bringing the vision to life. Toxicol Sci 107:324–330. doi:10.1093/toxsci/kfn255
Andrade CH, Silva DC, Braga RC (2014) In silico prediction of drug metabolism by P450. Curr Drug Metab 15:514–525
Ankley GT, Bennett RS, Erickson RJ et al (2010) Adverse outcome pathways: a conceptual framework to support ecotoxicology research and risk assessment. Environ Toxicol Chem 29:730–741. doi:10.1002/etc.34
Austin C, Kavlock RJ, Tice R (2008) Tox21: putting a lens on the vision of toxicity testing in the 21st century. Available via AltTox.org. http://alttox.org/tox21-putting-a-lens-on-the-vision-of-toxicity-testing-in-the-21st-century/. Accessed 30 May 2016
Becker RA, Ankley GT, Edwards SW et al (2015) Increasing scientific confidence in adverse outcome pathways: application of tailored Bradford-Hill considerations for evaluating weight of evidence. Regul Toxicol Pharmacol 72:514–537. doi:10.1016/j.yrtph.2015.04.004
Bell SM, Angrish MM, Wood CE, Edwards SW (2016) Integrating publicly available data to generate computationally predicted Adverse Outcome Pathways for fatty liver. Toxicol Sci 150:510–520. doi:10.1093/toxsci/kfw017
Benford D, Bolger PM, Carthew P et al (2010) Application of the margin of exposure (MOE) approach to substances in food that are genotoxic and carcinogenic. Food Chem Toxicol 48(Suppl 1):S2–24. doi:10.1016/j.fct.2009.11.003
Binetti R, Costamagna FM, Marcello I (2008) Exponential growth of new chemicals and evolution of information relevant to risk control. Ann Ist Super Sanita 44:13–15
Boobis AR, Cohen SM, Dellarco V et al (2008) IPCS framework for analyzing the relevance of a cancer mode of action for humans. Crit Rev Toxicol 36:781–792. doi:10.1080/10408440600977677
Browne P, Judson RS, Casey WM et al (2015) Screening chemicals for estrogen receptor bioactivity using a computational model. Environ Sci Technol 49:8804–8814. doi:10.1021/acs.est.5b02641
Caldwell JC, Evans MV, Krishnan K (2012) Cutting edge PBPK models and analyses: providing the basis for future modeling efforts and bridges to emerging toxicology paradigms. J Toxicol. doi:10.1155/2012/852384
Davis JA, Gift JS, Zhao QJ (2011) Introduction to benchmark dose methods and U.S. EPA’s benchmark dose software (BMDS) version 2.1.1. Toxicol Appl Pharmacol 254:181–191. doi:10.1016/j.taap.2010.10.016
Dimelow RJ, Metcalfe PD, Thomas S, Lyubimov AV (2011) In silico models of drug metabolism and drug interactions. In: Lyubimov A (ed) Encyclopedia of drug metabolism and interactions, vol V1. Wiley, Hoboken, pp 1–55
Downs CA, Kramarsky-Winter E, Fauth JE et al (2013) Toxicological effects of the sunscreen UV filter, benzophenone-2, on planulae and in vitro cells of the coral, Stylophora pistillata. Ecotoxicology 23:175–191. doi:10.1007/s10646-013-1161-y
Egeghy PP, Judson R, Gangwal S et al (2012) The exposure data landscape for manufactured chemicals. Sci Total Environ 414:159–166. doi:10.1016/j.scitotenv.2011.10.046
Eisenbrand G, Pool-Zobel B, Baker V et al (2002) Methods of in vitro toxicology. Food Chem Toxicol 40:193–236. doi:10.1016/S0278-6915(01)00118-1
Filipsson AF, Sand S, Nilsson J, Victorin K (2003) The benchmark dose method–review of available models, and recommendations for application in health risk assessment. Crit Rev Toxicol 33:505–542. doi:10.1080/10408440390242360
Goldsmith MR, Peterson SD, Chang DT et al (2012) Informing mechanistic toxicology with computational molecular models. Methods Mol Biol 929:139–165. doi:10.1007/978-1-62703-050-2_7
Goldsmith M-R, Grulke CM, Brooks RD et al (2014) Development of a consumer product ingredient database for chemical exposure screening and prioritization. Food Chem Toxicol 65:269–279. doi:10.1016/j.fct.2013.12.029
Groh KJ, Carvalho RN, Chipman JK et al (2015) Development and application of the adverse outcome pathway framework for understanding and predicting chronic toxicity: I. Challenges and research needs in ecotoxicology. Chemosphere 120:764–777. doi:10.1016/j.chemosphere.2014.09.068
Hill AB (1965) The environment and disease: association or causation? Proc R Soc Med 58:295–300
Isaacs KK, Glen WG, Egeghy P et al (2014) SHEDS-HT: an integrated probabilistic exposure model for prioritizing exposures to chemicals with near-field and dietary sources. Environ Sci Technol 48:12750–12759. doi:10.1021/es502513w
Jameson JL, Wheetman AP (2001) Disorders of the thyroid gland. In: Braunwald E, Fauci AS, Kasper DL et al (eds) Harrsison’s principles of internal medicine; chapter 405, 11th edn. McGraw-Hill, New York, pp 2048–2060
Judson RS, Kavlock RJ, Setzer RW et al (2011) Estimating toxicity-related biological pathway altering doses for high-throughput chemical risk assessment. Chem Res Toxicol 24:451–462. doi:10.1021/tx100428e
Judson R, Houck K, Martin M et al (2014) In vitro and modelling approaches to risk assessment from the U.S. Environmental Protection Agency ToxCast programme. Basic Clin Pharmacol Toxicol 115:69–76. doi:10.1111/bcpt.12239
Judson RS, Magpantay FM, Chickarmane V et al (2015) Integrated model of chemical perturbations of a biological pathway using 18 in vitro high-throughput screening assays for the estrogen receptor. Toxicol Sci 148:137–154. doi:10.1093/toxsci/kfv168
Kavlock RJ, Austin CP, Tice R (2009) Toxicity testing in the 21st century: implications for human health risk assessment. Risk Anal 29:485–497. doi:10.1111/j.1539-6924.2008.01168.x
Kirchmair J, Göller AH, Lang D et al (2015) Predicting drug metabolism: experiment and/or computation? Nat Rev Drug Discov 14:387–404. doi:10.1038/nrd4581
Kirkland D, Zeiger E, Madia F et al (2014) Can in vitro mammalian cell genotoxicity test results be used to complement positive results in the Ames test and help predict carcinogenic or in vivo genotoxic activity? I. Reports of individual databases presented at an EURL ECVAM workshop. Mutat Res Genet Toxicol Environ Mutagen 775–776:55–68. doi:10.1016/j.mrgentox.2014.10.005
Kleinstreuer NC, Judson RS, Reif DM et al (2011) Environmental impact on vascular development predicted by high-throughput screening. Environ Health Perspect 119:1596–1603. doi:10.1289/ehp.1103412
Kramer VJ, Etterson MA, Hecker M et al (2011) Adverse outcome pathways and ecological risk assessment: bridging to population-level effects. Environ Toxicol Chem 30:64–76. doi:10.1002/etc.375
Krewski D, Andersen ME, Mantus E, Zeise L (2009) Toxicity testing in the 21st century: implications for human health risk assessment. Risk Anal 29:474–479. doi:10.1111/j.1539-6924.2008.01150.x
Leonard JA, Sobel Leonard A, Chang DT et al (2016a) Evaluating the impact of uncertainties in clearance and exposure when prioritizing chemicals screened in high-throughput assays. Environ Sci Technol. doi:10.1021/acs.est.6b00374. Epub ahead of print
Leonard JA, Tan Y-M, Gilbert M et al (2016b) Estimating margin of exposure to thyroid peroxidase inhibitors using high-throughput in vitro data, high-throughput exposure modeling, and physiologically based pharmacokinetic/pharmacodynamic modeling. Toxicol Sci 151:57–70. doi:10.1093/toxsci/kfw022
Lin JH, Lu AYH (1997) Role of pharmacokinetics and metabolism in drug discovery and development. Pharmacol Rev 49:403–449
MacIntosh DL, Spengler JD (2000) Human exposure assessment. World Health Organization, Geneva, p 375. Accessed 31 Aug 2016. http://www.inchem.org/documents/ehc/ehc/ehc214.htm
Mackay D, Giesy JP, Solomon KR (2014) Fate in the environment and long-range atmospheric transport of the organophosphorus insecticide, chlorpyrifos and its oxon. Rev Environ Contam Toxicol 231:35–76. doi:10.1007/978-3-319-03865-0_3
McCurdy T, Glen G, Smith L, Lakkadi Y (2000) The national exposure research laboratory’s consolidated human activity database. J Expo Anal Environ Epidemiol 10:566–578
Meek MEB, Bucher JR, Cohen SM et al (2003) A framework for human relevance analysis of information on carcinogenic modes of action. Crit Rev Toxicol 33:591–653. doi:10.1080/713608373
Meek ME, Boobis A, Cote I et al (2014) New developments in the evolution and application of the WHO/IPCS framework on mode of action/species concordance analysis. J Appl Toxicol 34:1–18. doi:10.1002/jat.2949
Meibohm B, Derendorf H (1997) Basic concepts of pharmacokinetic/pharmacodynamic (PK/PD) modelling. Int J Clin Pharmacol Ther 35:401–413
Myint KZ, Xie X-Q (2010) Recent advances in fragment-based QSAR and multi-dimensional QSAR methods. Int J Mol Sci 11:3846–3866. doi:10.3390/ijms11103846
National Research Council (NRC) (1983) Risk assessment in the Federal Government: managing the process. National Academies Press, Washington, DC
National Research Council (NRC) (2007) Toxicity testing in the 21st century: a vision and a strategy. National Academies Press, Washington, DC
National Research Council (NRC) (2009) Science and decisions. National Academies Press, Washington, DC
Oki NO, Nelms MD, Bell SM et al (2016) Accelerating adverse outcome pathway development using publicly available data sources. Curr Environ Health Rep 3:53–63. doi:10.1007/s40572-016-0079-y
Organization for Economic Cooperation and Development (OECD) (2013a) Guidance document on developing and assessing adverse outcome pathways. Available via OECD. http://www.oecd.org/officialdocuments/publicdisplaydocumentpdf/?cote=env/jm/mono(2013)6&doclanguage=en. Accessed 30 May 2016
Organization for Economic Cooperation and Development (OECD) (2013b) Users’ handbook supplement to the guidance document for developing and assessing AOPs. Available via OECD. http://aopkb.org/common/AOP_Handbook.pdf. Accessed 14 Apr 2016
Patlewicz G, Simon TW, Rowlands JC et al (2015) Proposing a scientific confidence framework to help support the application of adverse outcome pathways for regulatory purposes. Regul Toxicol Pharmacol 71:463–477. doi:10.1016/j.yrtph.2015.02.011
Paul KB, Hedge JM, Rotroff DM et al (2014) Development of a thyroperoxidase inhibition assay for high-throughput screening. Chem Res Toxicol 27:387–399. doi:10.1021/tx400310w
Perkins EJ, Chipman JK, Edwards S et al (2011) Reverse engineering adverse outcome pathways. Environ Toxicol Chem 30:22–38. doi:10.1002/etc.374
Perkins EJ, Antczak P, Burgoon L et al (2015) Adverse outcome pathways for regulatory applications: examination of four case studies with different degrees of completeness and scientific confidence. Toxicol Sci 148:14–25. doi:10.1093/toxsci/kfv181
Phillips RD, Bahadori T, Barry BE et al (2009) Twenty-first century approaches to toxicity testing, biomonitoring, and risk assessment: perspectives from the global chemical industry. J Expo Sci Environ Epidemiol 19:536–543. doi:10.1038/jes.2009.38
Phillips MB, Leonard JA, Grulke CM et al (2016) A workflow to investigate exposure and pharmacokinetics influences on high-throughput in vitro chemical screening based on adverse outcome pathways. Environ Health Perspect 124:53–60. doi:10.1289/ehp.140945
Seed J, Carney EW, Corley RA et al (2005) Overview: using mode of action and life stage information to evaluate the human relevance of animal toxicity data. Crit Rev Toxicol 35:664–672
Shlomi T, Cabili MN, Herrgard MJ et al (2008) Network-based prediction of human tissue-specific metabolism. Nat Biotechnol 26:1003–1010. doi:10.1038/nbt.1487. [pii]10.1038/nbt.1487
Shukla SJ, Huang R, Austin CP, Xia M (2010) The future of toxicity testing: a focus on in vitro methods using a quantitative high throughput screening platform. Drug Discov Today 15:997–1007. doi:10.1016/j.drudis.2010.07.007
Simmons JE, Evans MV, Boyes WK (2005) Moving from external exposure concentration to internal dose: duration extrapolation based on physiologically based pharmacokinetic derived estimates of internal dose. J Toxicol Environ Health A 68:927–950. doi:10.1080/15287390590912586
Soldatow VY, LeCluyse EL, Griffith LG, Rusyn I (2013) In vitro models for liver toxicity testing. Toxicol Res (Camb) 2:23–39. doi:10.1039/C2TX20051A
Stadnicka-Michalak J, Tanneberger K, Schirmer K, Ashauer R (2014) Measured and modeled toxicokinetics in cultured fish cells and application to in vitro – in vivo toxicity extrapolation. PLoS One 9:e92303. doi:10.1371/journal.pone.0092303
Sun H (2005) Predicting ADMET properties by projecting onto chemical space: benefits and pitfalls. Curr Comput – Aided Drug Des 1:179–193. doi:10.2174/1573409053585708
Sun H, Xia M, Austin CP, Huang R (2012) Paradigm shift in toxicity testing and modeling. AAPS J 14:473–480. doi:10.1208/s12248-012-9358-1
Thompson A, Griffin P, Stuetz R, Cartmell E (2005) The fate and removal of triclosan during wastewater treatment. Water Environ Res 77:63–67. doi:10.2175/106143005X41636
Tollefsen KE, Scholz S, Cronin MT et al (2014) Applying adverse outcome pathways (AOPs) to support integrated approaches to testing and assessment (IATA). Regul Toxicol Pharmacol 70:629–640. doi:10.1016/j.yrtph.2014.09.009
Villeneuve DL, Crump D, Garcia-Reyero N et al (2014a) Adverse outcome pathway development II: best practices. Toxicol Sci 142:321–330. doi:10.1093/toxsci/kfu200
Villeneuve DL, Crump D, Garcia-Reyero N et al (2014b) Adverse outcome pathway (AOP) development I: strategies and principles. Toxicol Sci 142:312–320. doi:10.1093/toxsci/kfu199
Vinken M (2013) The adverse outcome pathway concept: a pragmatic tool in toxicology. Toxicology 312:158–165. doi:10.1016/j.tox.2013.08.011
Wambaugh JF, Wang A, Dionisio KL et al (2014) High throughput heuristics for prioritizing human exposure to environmental chemicals. Environ Sci Technol 48:12760–12767. doi:10.1021/es503583j
Wegner JK, Fröhlich H, Mielenz HM, Zell A (2006) Data and graph mining in chemical space for ADME and activity data sets. QSAR Comb Sci 25:205–220. doi:10.1002/qsar.200510009
Wetmore BA, Wambaugh JF, Allen B et al (2015) Incorporating high-throughput exposure predictions with dosimetry-adjusted in vitro bioactivity to inform chemical toxicity testing. Toxicol Sci 148:121–136. doi:10.1093/toxsci/kfv171
Willett P, Barnard JM, Downs GM (1998) Chemical similarity searching. J Chem Inf Comput Sci 38:983–996. doi:10.1021/ci9800211
Yang C, Tarkhov A, Marusczyk J et al (2015) New publicly available chemical query language, CSRML, to support chemotype representations for application to data mining and modeling. J Chem Inf Model 55:510–528. doi:10.1021/ci500667v
Zurlo J, Rudacille D, Goldberg AM (2001) Animals and alternatives in testing: history, science, and ethics. Mary Ann Liebert, Larchmont
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Leonard, J., Bell, S., Oki, N., Nelms, M., Tan, YM., Edwards, S. (2018). Tiered Approaches to Incorporate the Adverse Outcome Pathway Framework into Chemical-Specific Risk-Based Decision Making. In: Garcia-Reyero, N., Murphy, C. (eds) A Systems Biology Approach to Advancing Adverse Outcome Pathways for Risk Assessment. Springer, Cham. https://doi.org/10.1007/978-3-319-66084-4_12
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