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Proteomic Analysis of Human Bladder Tissue Using SELDI® Approach Following Microdissection Techniques

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Laser Capture Microdissection

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 293))

Abstract

Lysing of a complete biopsy sample results in a mixture of desired and undesired proteins, reflecting the originating cell types. Therefore microdissecting tissue material is mandatory prior to sample lysis and all downstream applications of protein analysis (proteomics). The two most important dissecting methods for bladder tissue specimens are manual microdissection and laser microdissection. Sample transfer can further be separated into manual laser pressure catapulting (LPC) and laser capture microdissection (LCM). One of the possible downstream applications of protein analysis is surfaceenhanced laser desorption ionization (SELDI) time-of-flight mass spectrometry. The small quantities of tissue obtained by microdissection are sufficient for use in the SELDI technique.

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References

  1. Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., SuHon, G. G., et al. (2001) The sequence of the human genome. Science 291, 1304–1351.

    Article  PubMed  CAS  Google Scholar 

  2. McPherson, J. D., Marra, M., Hillier, L., Waterston, R. H., Chinwalla, A., et al. (2001) A physical map of the human genome. Nature 409, 934–941.

    Article  PubMed  CAS  Google Scholar 

  3. Wasinger, V. C., Cordwell, S. J., Cerpa-Poljak, A., Yan, J.X., Gooley, A.A., Wilkins, M.R., et al. (1995) progress with gene-product mapping of the mollicutes: mycoplasma genitalium. Electrophoresis 16, 1090–1094.

    Article  CAS  Google Scholar 

  4. Krieg, R. C., Paweletz, C. P., Liotta, L. A., and Petricoin, E. F. (2002) Clinical proteomics for cancer biomarker discovery and therapeutic targeting technology. Cancer Research and Treatment 1, 1–10.

    Google Scholar 

  5. Srinivasan, R. (1986) Ablation of polymers and biological tissue by ultraviolet lasers. Science 234, 559–565.

    Article  PubMed  CAS  Google Scholar 

  6. Schutze, K. and Clement-Sengewald, A. (1994) Catch and move-cut or fuse. Nature 368, 667–669.

    Article  PubMed  CAS  Google Scholar 

  7. Emmert-Buck, M. R., Bonner, R. F., Smith, P. D., Chuaqui, R. F., Zhuang, Z., Goldstein, S. R., et al. (1996) Laser capture microdissection. Science 274, 998–1001.

    Article  PubMed  CAS  Google Scholar 

  8. Bonner, R.F., Emmert-Buck, M. R., Cole, K., Pohida, T., Chuaqui, R., Goldstein, S., and Liotta, L. A. (1997) Laser capture microdissection: molecular analysis of tissue. Science 278, 1481–1483.

    Article  PubMed  CAS  Google Scholar 

  9. Zaak, D., Kriegmair, M., Stepp, H., Stepp, H., Baumgartner, R., Oberneder, R., et al. (2001) Endoscopic detection of transitional cell carcinoma with 5-amino-levulinic acid: results of 1012 fluorescence endoscopies. Urology 57, 690–694.

    Article  PubMed  CAS  Google Scholar 

  10. Kriegmair, M., Baumgartner, R., Lumper, W., Waidelich, R., and Hofstetter, A. (1996) Early clinical experience with 5-aminolevulinic acid for the photodynamic therapy of superficial bladder cancer. Br. J. Urol. 77, 667–671.

    PubMed  CAS  Google Scholar 

  11. Messmann, H., Knüchel, R., Bäumler, W., Holstege, A., and Schölmerich, J. (1999) Endoscopic fluorescence detection of dysplasia in patients with Barrett’s esophagus, ulcerative colitis, or adenomatous polyps after 5-aminolevulinic acid-induced protoporphyrin IX sensitization. Gastrointest. Endosc. 49, 97–101.

    Article  PubMed  CAS  Google Scholar 

  12. Burck, H. C. (ed.) (1988) Histologische Technik. Georg Thieme Verlag, Stuttgart.

    Google Scholar 

  13. Romeis, B. and Böck, P. (ed.) (1989) Mikroskopische Technik. Urban & Schwarzenberg, München.

    Google Scholar 

  14. Petricoin, E. F., Ardekani, A. M., Hitt, B. A., Levine, P. J., Fusaro, V. A., Steinberg, S. M., et al. (2002) Use of proteomic patterns in serum to identify ovarian cancer. Lancet 359, 572–577.

    Article  PubMed  CAS  Google Scholar 

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© 2005 Humana Press Inc.

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Krieg, R.C., Gaisa, N.T., Paweletz, C.P., Knuechel, R. (2005). Proteomic Analysis of Human Bladder Tissue Using SELDI® Approach Following Microdissection Techniques. In: Murray, G.I., Curran, S. (eds) Laser Capture Microdissection. Methods in Molecular Biology™, vol 293. Humana Press. https://doi.org/10.1385/1-59259-853-6:255

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  • DOI: https://doi.org/10.1385/1-59259-853-6:255

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-260-5

  • Online ISBN: 978-1-59259-853-3

  • eBook Packages: Springer Protocols

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