Abstract
The kidney consists of many functional modules called nephrons. Each nephron has a tubular structure made up of several structurally and functionally distinct segments. The analysis of individual segments requires the use of microdissection techniques. We describe protocols that have been used to successfully isolate messenger RNA from proximal tubules of both freshly prepared and archival samples using laser capture microdissection and laser-manipulated microdissection.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Moriyama, A., Murohy, H. R., Martin, B. M., and Garcia, P. A. (1990) Detection of specific mRNA in single nephron segments by use of polymerase chain reaction. Am J. Physiol 258, F1470–F1474
Cornea, A. M. (2002) Comparison of current equipment, in Methods in Enzymology (Conn, P. M., ed.), Academic Press, San Diego, CA 356, pp. 3–12.
Emmert-Buck, M. R., Bonner, R. F., Smith, P. D., Chuaqui, R. F., Zhuang, Z., Goldstein, S. R., et al. (1996) Laser capture microdissection. Science 274, 998–1001.
Schutze, K and Lahr, G. (1998) Identification of expressed genes by laser-mediated manipulation of single cells. Nat. Biotechnol. 16,737–742.
Kaimori, J. Y., Takenaka, M., Nagasawa, Y., Nakajima, H., Izumi, M., Akagi, Y., et al. (2002) Quantitative analyses of osteopontin mRNA expression in human proximal tubules isolated from renal biopsy tissue sections of minimal change nephritic syndrome and IgA. Glomerulonephropathy patients. Am. J. Kidney Dis. 39, 9948–9957.
Masuda, N., Ohnishi, T., Kawamoto, S., Monden, M., and Okubo, K. (1999) Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res. 27,4436–4443.
Okubo, K. and Hishiki, T. (2003) Knowledge discovery from the human transcriptome, in Introduction to Bioinformatics (Krawetz, S. A., ed.) Humana Press, Totowa, NJ, pp. 693–710.
Nakajima, H., Takenaka, M., Kaimori, J. Y., Nagasawa, Y., Kosugi, A., Kawamoto, S., et al. (2002) Gene expression profile of renal proximal tubules regulated by proteinuria. Kidney Int. 61, 1577–1587.
Takenaka, M., Imai, I., Nagasawa, Y., Matsuoka, Y., Moriyama, T., Kaneko, T., et al. (2000) Gene expression profile of the collecting duct in the mouse inner medulla. Kidney Int. 57, 19–24.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2005 Humana Press Inc.
About this protocol
Cite this protocol
Kaimori, Jy., Takenaka, M., Okubo, K. (2005). 16 Quantification of Gene Expression in Mouse and Human Renal Proximal Tubules. In: Murray, G.I., Curran, S. (eds) Laser Capture Microdissection. Methods in Molecular Biology™, vol 293. Humana Press. https://doi.org/10.1385/1-59259-853-6:209
Download citation
DOI: https://doi.org/10.1385/1-59259-853-6:209
Publisher Name: Humana Press
Print ISBN: 978-1-58829-260-5
Online ISBN: 978-1-59259-853-3
eBook Packages: Springer Protocols