Skip to main content

16 Quantification of Gene Expression in Mouse and Human Renal Proximal Tubules

  • Protocol
Laser Capture Microdissection

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 293))

  • 530 Accesses

Abstract

The kidney consists of many functional modules called nephrons. Each nephron has a tubular structure made up of several structurally and functionally distinct segments. The analysis of individual segments requires the use of microdissection techniques. We describe protocols that have been used to successfully isolate messenger RNA from proximal tubules of both freshly prepared and archival samples using laser capture microdissection and laser-manipulated microdissection.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Moriyama, A., Murohy, H. R., Martin, B. M., and Garcia, P. A. (1990) Detection of specific mRNA in single nephron segments by use of polymerase chain reaction. Am J. Physiol 258, F1470–F1474

    PubMed  CAS  Google Scholar 

  2. Cornea, A. M. (2002) Comparison of current equipment, in Methods in Enzymology (Conn, P. M., ed.), Academic Press, San Diego, CA 356, pp. 3–12.

    Google Scholar 

  3. Emmert-Buck, M. R., Bonner, R. F., Smith, P. D., Chuaqui, R. F., Zhuang, Z., Goldstein, S. R., et al. (1996) Laser capture microdissection. Science 274, 998–1001.

    Article  PubMed  CAS  Google Scholar 

  4. Schutze, K and Lahr, G. (1998) Identification of expressed genes by laser-mediated manipulation of single cells. Nat. Biotechnol. 16,737–742.

    Article  PubMed  CAS  Google Scholar 

  5. Kaimori, J. Y., Takenaka, M., Nagasawa, Y., Nakajima, H., Izumi, M., Akagi, Y., et al. (2002) Quantitative analyses of osteopontin mRNA expression in human proximal tubules isolated from renal biopsy tissue sections of minimal change nephritic syndrome and IgA. Glomerulonephropathy patients. Am. J. Kidney Dis. 39, 9948–9957.

    Article  Google Scholar 

  6. Masuda, N., Ohnishi, T., Kawamoto, S., Monden, M., and Okubo, K. (1999) Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res. 27,4436–4443.

    Article  PubMed  CAS  Google Scholar 

  7. Okubo, K. and Hishiki, T. (2003) Knowledge discovery from the human transcriptome, in Introduction to Bioinformatics (Krawetz, S. A., ed.) Humana Press, Totowa, NJ, pp. 693–710.

    Chapter  Google Scholar 

  8. Nakajima, H., Takenaka, M., Kaimori, J. Y., Nagasawa, Y., Kosugi, A., Kawamoto, S., et al. (2002) Gene expression profile of renal proximal tubules regulated by proteinuria. Kidney Int. 61, 1577–1587.

    Article  PubMed  CAS  Google Scholar 

  9. Takenaka, M., Imai, I., Nagasawa, Y., Matsuoka, Y., Moriyama, T., Kaneko, T., et al. (2000) Gene expression profile of the collecting duct in the mouse inner medulla. Kidney Int. 57, 19–24.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Humana Press Inc.

About this protocol

Cite this protocol

Kaimori, Jy., Takenaka, M., Okubo, K. (2005). 16 Quantification of Gene Expression in Mouse and Human Renal Proximal Tubules. In: Murray, G.I., Curran, S. (eds) Laser Capture Microdissection. Methods in Molecular Biology™, vol 293. Humana Press. https://doi.org/10.1385/1-59259-853-6:209

Download citation

  • DOI: https://doi.org/10.1385/1-59259-853-6:209

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-260-5

  • Online ISBN: 978-1-59259-853-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics