Abstract
AU-rich elements (AREs) are found in 3′ untranslated regions (3′ UTR) of many highly unstable mRNAs for mammalian early-response genes. The minimal AU sequence core within the ARE is the heptamer WAUUUAW, although from a functional point of view, several pentanucleotides clustered in close proximity are the key sequence motif that mediates mRNA degradation (1).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Xu, N., Chen, C. Y., and Shyu, A. B. (1997) Modulation of the fate of cytoplasmic mRNA by AU-rich elements: key sequence features controlling mRNA deadenylation and decay. Mol. Cell Biol. 17, 4611–4621.
Shaw, G. and Kamen, R. (1986) A conserved AU sequence from the 3′ untranslated region of GM-CSF mRNA mediates selective mRNA degradation. Cell 46, 659–667.
Caput, D., Beutler, B., Hartog, K., Thayer, R., Brown-Shimer, S., and Cerami, A. (1986) Identification of a common nucleotide sequence in the 3′-untranslated region of mRNA molecules specifying infammatory mediators. Proc. Natl. Acad. Sci. USA 83, 1670–1674.
Balmer, L. A., Beveridge, D. J., Jazayeri, J. A., Thomson, A. M., Walker, C. E., and Leedman, P. J. (2001) Identification of a novel AU-Rich element in the 3′ untranslated region of epidermal growth factor receptor mRNA that is the target for regulated RNA-binding proteins. Mol. Cell Biol. 21, 2070–2084.
King, L. M. and Francomano, C. A. (2001) Characterization of a human gene encoding nucleosomal binding protein nsbp1. Genomics 71, 163–173.
Liang, P. and Pardee, A. B. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257, 967–971.
Welsh, J., Chada, K., Dalal, S. S., Cheng, R., Ralph, D., and McClelland, M. (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Res. 20, 4965–4970.
Stone, B. and Wharton, W. (1994) Targeted RNA fngerprinting: the cloning of differentially-expressed cDNA fragments enriched for members of the zinc fnger gene family. Nucleic Acids Res. 22, 2612–2618.
Donohue, P. J., Alberts, G. F., Guo, Y., and Winkles, J. A. (1995) Identification by targeted differential display of an immediate early gene encoding a putative Serine/Threonine kinase. J. Biol. Chem. 270, 10,351–10,357.
Fischer, A., Saedler, H., and Theissen, G. (1995) Restriction fragment length polymorphism-coupled domain directed differential display: a highly efficient technique for expression analysis of multigene families. Proc. Natl. Acad. Sci. USA 92, 5331–5335.
Joshi, C. P., Kumar, S., and Nguyen, H. T. (1996) Application of modifed differential display technique for cloning and sequencing of the 3′ region from three putative members of wheat HSP70 gene family. Plant Mol. Biol. 30, 641–646.
Dominguez, O., Ashhab, Y., Sabater, L., Belloso, E., Caro, P., and Pujol-Borrell, R. (1998) Cloning of ARE-containing genes by AU-motif-directed display. Genomics 54, 278–286.
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Plainview, NY.
Chomczynski, P. and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156–159.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2003 Humana Press Inc.
About this protocol
Cite this protocol
Dominguez, O., Sabater, L., Ashhab, Y., Belloso, E., Pujol-Borrell, R. (2003). AU-Differential Display, Reproducibility of a Differential mRNA Display Targeted to AU Motifs. In: Bartlett, J.M.S., Stirling, D. (eds) PCR Protocols. Methods in Molecular Biology™, vol 226. Humana Press. https://doi.org/10.1385/1-59259-384-4:225
Download citation
DOI: https://doi.org/10.1385/1-59259-384-4:225
Publisher Name: Humana Press
Print ISBN: 978-0-89603-642-0
Online ISBN: 978-1-59259-384-2
eBook Packages: Springer Protocols