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Mapping MHC Class II Genes and Disease-Susceptibility

Use of Polymerase Chain Reaction and Dot Hybridization for Human Leukocyte Antigen Allele Typing

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PCR Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 15))

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Abstract

The genes of the human leukocyte antigen (HLA) region control a variety of functions involved in the immune response and influence susceptibility to over 40 diseases. The region maps to the short arm of chromosome 6 and is divided into three regions, denoted class I, II, and III. The HLA class II gene complex is approx 1000 kb in length and is arranged into three main subregions (HLA-DP, −DQ, and −DR), each of which contains genes of two types, A and B. The A genes encode α-polypeptides and B genes encode β-polypeptides; together these form the functional class II αβ dimer. Although some haplotypes contain up to 14 class II loci, not all are expressed, and limitations on functionally permissive heterodimer formation restricts the expressed repertoire to 4 class II molecules/haplotype: DPαβ, DQαβ, DRαβ1, and DRαβ3,4,5(the second DR molecule is either DRαβ3, DRαβ4, or DRαβ5, depending on the haplotype). With the exception of the DRA locus, the genes encoding each of these polypeptides are highly polymorphic.

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References

  1. Todd, J. A., Mijovic, C., Fletcher, J., Jenkins, D., Bradwell, A. R., and Bamett, A. H. (1989) Identification of susceptibility loci for insulin-dependent diabetes mellitus by trans-racial mapping. Nature 338, 587–589.

    Article  PubMed  CAS  Google Scholar 

  2. Todd, J. A., Bell, J. I., and McDevitt, H. O. (1987) HLA-DQb gene contributes to susceptibility and resistance to insulin-dependent diabetes mellitus. Nature 329, 599–604.

    Article  PubMed  CAS  Google Scholar 

  3. Todd, J. A., Fukui, Y., Kitagawa, T., and Sasazuki, T. (1990) The A3 allele of the HLA-DQA1 locus is associated with susceptibility to type 1 diabetes in Japanese. Proc. Natl. Acad. Sci. USA 87, 1094–1098.

    Article  PubMed  CAS  Google Scholar 

  4. Lanchbury, J. S. S., Hall, M. A., Welsh, K. I., and Panayi, G. S. (1990) Sequence analysis of HLA-DR4B1 subtypes: Additional fast domain variability is detected by oligonucleotide hybridisation and nucleotide sequencing. Hum. Immunol. 27, 136–144.

    Article  PubMed  CAS  Google Scholar 

  5. Wordsworth, B. P., Allsopp, C. E. M., Young, R. P., and Bell, J. I. (1990) HLA-DR typing using DNA amplification by the polymerase chain reaction and sequential hybridization to sequence-specific oligonucleotide probes. Immunogenetics 32, 413–418.

    Article  PubMed  CAS  Google Scholar 

  6. Rosenberg, W. M. C., Wordsworth, B. P., Jewel, D. P., and Bell, J. I. (1989) A locus telomeric to HLA-DPB encodes susceptibility to coeliac disease. Immunogenetics 30, 307–310.

    Article  PubMed  CAS  Google Scholar 

  7. Bugawan, T. L., Horn, T. L., Long, C. M., Meckelson, E., Hansen, J. A., Ferrara, G. B., Angelini, G., and Erlich, H.A. (1988) Analysis of HLA-DP allelic sequence polymorphism using the in-vitro enzymatic DNA amplification of DP-a and DP-b loci. J. Immunol. 141, 4024–4030.

    PubMed  CAS  Google Scholar 

  8. Mijovic, C. H., Jenkins, D., Jacobs, K. H., Penny, M. A., Fletcher, J. A., and Barnett, A. H. (1991) HLA-DQA1 and-DQB1 alleles associated with genetic susceptibility to IDDM in a black population. Diabetes 40, 748–753.

    Article  PubMed  CAS  Google Scholar 

  9. Bugawan, T. L., Angelini, G., Larrick. J., Auricchio, S., Ferrara, G. B., and Erlich, H. A. (1989) A combination of a particular HLA-DPb allele and an HLA-DQ heterodimer confers susceptibility to coeliac disease. Nature 339, 470–473.

    Article  PubMed  CAS  Google Scholar 

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© 1993 Humana Press Inc., Totowa, NJ

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Bain, S.C., Todd, J.A. (1993). Mapping MHC Class II Genes and Disease-Susceptibility. In: White, B.A. (eds) PCR Protocols. Methods in Molecular Biology, vol 15. Humana Press, Totowa, NJ. https://doi.org/10.1385/0-89603-244-2:95

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  • DOI: https://doi.org/10.1385/0-89603-244-2:95

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-0-89603-244-6

  • Online ISBN: 978-1-59259-502-0

  • eBook Packages: Springer Protocols

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