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Mass Spectrometric Characterization of Neuropeptides

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Mass Spectrometry of Proteins and Peptides

Part of the book series: Methods In Molecular Biology ((MIMB,volume 492))

Summar

Because of their great biological significance, neuropeptides are the subject of intensive research. Mass spectrometry (MS) is a highly informative and sensitive method used for detecting and characterizing these compounds. Successful MS analysis of neuropeptides is dependent on careful sample preparation. Herein, we present two common sample preparation strategies: direct tissue analysis and pooled tissue extraction coupled with fractionation.

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References

  1. Strand, F. L. (1994) Models of neuropep-tide action. New York Academy of Sciences, New York, NY

    Google Scholar 

  2. Kutz, K. K., Schmidt, J. J., and Li, L. (2004)In situ tissue analysis of neuropeptides by MALDI FTMS in-cell accumulation. Anal. Chem. 76, 5630–5640

    Article  CAS  PubMed  Google Scholar 

  3. Fournier, I., Day, R., and Salzet, M. (2003)Direct analysis of neuropeptides by in situ MALDI-TOF mass spectrometry in the rat brain. Neuro. Endocrinol. Lett. 24, 9.–14

    CAS  PubMed  Google Scholar 

  4. DeKeyser, S. S., and Li, L. (2007) Massspectrometric charting of neuropeptides inarthropod neurons. Anal. Bioanal. Chem. 387 (1), 29–35 DOI: 10.1007/s00216- 006-0596-x

    Article  CAS  PubMed  Google Scholar 

  5. Neupert, S., Predel, R., Russell, W. K., Dav-ies, R., Pietrantonio, P. V., and Nachman, R. J. (2005) Identification of tick periviscero-kinin, the first neurohormone of ixodidae: Single cell analysis by means of MALDI-TOF/TOF mass spectrometry. Biochem. Biophys. Res. Commun. 338, 1860–1864

    Article  CAS  PubMed  Google Scholar 

  6. Yew, J. Y., Dikler, S., and Stretton, A. O.(2003) De novo sequencing of novel neu-ropeptides directly from ascaris suum tissueusing matrix-assisted laser desorption/ioni-zation time-of-flight/time-of-flight. Rapid Commun. Mass Spectrom. 17, 2693–2698

    Article  CAS  PubMed  Google Scholar 

  7. Jespersen, S., Chaurand, P., van Strien,F. J., Spengler, B., and van der Greef, J. (1999) Direct sequencing of neuropeptides in biological tissue by MALDI-PSD mass spectrometry. Anal. Chem. 71, 660–666

    Article  CAS  PubMed  Google Scholar 

  8. Hummon, A. B., Amare, A., and Sweedler,J. V. (2006) Discovering new invertebrate neuropeptides using mass spectrometry. Mass Spectrom. Rev. 25, 77–98

    Article  CAS  PubMed  Google Scholar 

  9. O'Connor, P. B., and Costello, C. E. (2000)Internal calibration on adjacent samples (InCAS) with Fourier transform mass spec-trometry. Anal. Chem. 72, 5881–5885

    Article  PubMed  Google Scholar 

  10. Svensson, M., Skold, K., Svenningsson,P., and Andren, P. E. (2003) Peptidomics-based discovery of novel neuropeptides. J.Proteome Res. 2, 213–219

    Article  CAS  PubMed  Google Scholar 

  11. Che, F. Y., Lim, J., Pan, H., Biswas, R.,and Fricker, L. D. (2005) Quantitative neuropeptidomics of microwave-irradiated mouse brain and pituitary. Mol. Cell. Pro-teomic. 4, 1391–1405

    Article  CAS  Google Scholar 

  12. Baggerman, G., Boonen, K., Verleyen, P.,De Loof, A., and Schoofs, L. (2005) Pep-tidomic analysis of the larval drosophila melanogaster central nervous system by two-dimensional capillary liquid chromatog-raphy quadrupole time-of-flight mass spec-trometry. J. Mass Spectrom. 40, 250–260

    Article  CAS  PubMed  Google Scholar 

  13. Fu, Q., Goy, M. F., and Li, L. (2005) Identification of neuropeptides from the deca pod crustacean sinus glands using nanoscale liquid chromatography tandem mass spec-trometry. Biochem. Biophys. Res. Commun. 337, 765–778

    Article  CAS  PubMed  Google Scholar 

  14. Mohring, T., Kellmann, M., Jurgens, M.,and Schrader, M. (2005) Top-down identification of endogenous peptides up to 9 kDa in cerebrospinal fluid and brain tissue by nanoelectrospray quadrupole time-of-flight tandem mass spectrometry. J. Mass Spectrom. 40, 214–226

    Article  PubMed  Google Scholar 

  15. Fu, Q., and Li, L. (2005) De novo sequencing of neuropeptides using reductive iso-topic methylation and investigation of ESI QTOF MS/MS fragmentation pattern of neuropeptides with N-terminal dimethyla-tion. Anal. Chem. 77, 7783–7795

    Article  CAS  PubMed  Google Scholar 

  16. Hsu, J. L., Huang, S. Y., Shiea, J. T., Huang,W. Y., and Chen, S. H. (2005) Beyond quantitative proteomics: Signal enhancement of the a1 ion as a mass tag for peptide sequencing using dimethyl labeling. J. Proteome Res. 4, 101–108

    Article  CAS  PubMed  Google Scholar 

  17. De Keyser, S. S., and Li, L. (2006) Matrix-assisted laser desorption/ionization fourier transform mass spectrometry quantita-tion via in cell combination. Analyst 131, 281–290

    Article  Google Scholar 

  18. Falth, M., Skold, K., Norrman, M., Sven-sson, M., Fenyo, D., and Andren, P. E. (2006) SwePep, a database designed for endogenous peptides and mass spectrom-etry. Mol. Cell. Proteomic. 5, 998–1005

    Article  Google Scholar 

  19. Ducret, A., Van Oostveen, I., Eng, J. K.,Yates, J. R. III, and Aebersold, R. (1998) High throughput protein characterization by automated reverse-phase chromatogra-phy/electrospray tandem mass spectrom-etry. Protein Sci. 7, 706–719

    Article  CAS  PubMed  Google Scholar 

  20. Mann, M., and Wilm, M. (1994) Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem. 66, 4390–4399

    Article  CAS  PubMed  Google Scholar 

  21. Baggerman, G., Liu, F., Wets, G., andSchoofs, L. (2005) Bioinformatic analysis of peptide precursor proteins. Ann. N. Y. Acad. Sci. 1040, 59–65

    Article  CAS  PubMed  Google Scholar 

  22. Neupert, S., and Predel, R. (2005) Massspectrometric analysis of single identified neurons of an insect. Biochem. Biophys. Res. Commun. 327, 640–645

    Article  CAS  PubMed  Google Scholar 

  23. Stemmler, E. A., Provencher, H. L., Guiney,M. E., Gardner, N. P., and Dickinson, P. S. (2005) Matrix-assisted laser desorption/ ionization fourier transform mass spectrom-etry for the identification of orcokinin neu-ropeptides in crustaceans using metastable decay and sustained off-resonance irradiation. Anal. Chem. 77, 3594–3606

    Article  CAS  PubMed  Google Scholar 

  24. Laugesen, S., and Roepstorff, P. (2003)Combination of two matrices results in improved performance of MALDI MS for peptide mass mapping and protein analysis. J. Am. Soc. Mass Spectrom. 14, 992–1002

    Article  CAS  PubMed  Google Scholar 

  25. Cohen, S. L., and Chait, B. T. (1996) Influ-ence of matrix solution conditions on the MALDI-MS analysis of peptides and proteins. Anal. Chem. 68, 31–37

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

This work was supported in part by National Science Foundation CAREER Award (CHE-0449991), National Institutes of Health through grant 1R01DK071801, and an Alfred P. Sloan Research Fellowship (L.L.). S.S.C. is supported by an individual NRSA predoctoral fellowship 1F31NS053283. J.A.D. acknowledges an American Foundation for Pharmaceutical Education (AFPE) pre-doctoral fellowship.

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© 2009 Humana Press, a part of Springer Science+Business Media, LLC

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Cape, S.S., Dowell, J.A., Li, L. (2009). Mass Spectrometric Characterization of Neuropeptides. In: Lipton, M.S., Paša-Tolic, L. (eds) Mass Spectrometry of Proteins and Peptides. Methods In Molecular Biology, vol 492. Humana Press. https://doi.org/10.1007/978-1-59745-493-3_23

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  • DOI: https://doi.org/10.1007/978-1-59745-493-3_23

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-934115-48-0

  • Online ISBN: 978-1-59745-493-3

  • eBook Packages: Springer Protocols

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