Skip to main content

Cell Surface Protein Biotinylation for SDS-PAGE Analysis

  • Protocol
  • First Online:
Electrophoretic Separation of Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1855))

Abstract

Proteins expressed at the cell surface play important roles in physiology and represent valuable targets for new therapeutic agents. Indeed, the so-called druggable proteome consists, for about two thirds, of proteins that are either integral to or associated with the cell membrane. In spite of its importance, however, a complete characterization of the cell surface proteome has remained elusive because of the difficulty to efficiently purify these proteins from other contaminants. Methods exploiting the strong interaction between biotin and streptavidin have paved the way for the most significant advances in this field. The present chapter focuses on techniques for cell surface biotinylation with commercially available reagents and capture by avidin affinity chromatography and release of the biotinylated surface proteins for downstream analysis by electrophoretic methods.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 189.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Uhlen M, Fagerberg L, Hallstrom BM et al (2015) Proteomics. Tissue-based map of the human proteome. Science 347:1260419

    Article  Google Scholar 

  2. Wishart DS, Knox C, Guo AC et al (2006) DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res 34:D668–D672

    Article  CAS  Google Scholar 

  3. Wu CC, Yates JR 3rd (2003) The application of mass spectrometry to membrane proteomics. Nat Biotechnol 21:262–267

    Article  CAS  Google Scholar 

  4. Macher BA, Yen TY (2007) Proteins at membrane surfaces—a review of approaches. Mol Biosyst 3:705–713

    Article  CAS  Google Scholar 

  5. Tan S, Tan HT, Chung MC (2008) Membrane proteins and membrane proteomics. Proteomics 8:3924–3932

    Article  CAS  Google Scholar 

  6. Zheng YZ, Foster LJ (2009) Biochemical and proteomic approaches for the study of membrane microdomains. J Proteome 72:12–22

    Article  CAS  Google Scholar 

  7. Huber LA, Pfaller K, Vietor I (2003) Organelle proteomics: implications for subcellular fractionation in proteomics. Circ Res 92:962–968

    Article  CAS  Google Scholar 

  8. Castle JD (2003) Purification of organelles from mammalian cells. Curr Protoc Immunol. Chapter 8:Unit 8.1B

    Google Scholar 

  9. Schindler J, Lewandrowski U, Sickmann A et al (2006) Proteomic analysis of brain plasma membranes isolated by affinity two-phase partitioning. Mol Cell Proteomics 5:390–400

    Article  CAS  Google Scholar 

  10. Schindler J, Nothwang HG (2006) Aqueous polymer two-phase systems: effective tools for plasma membrane proteomics. Proteomics 6:5409–5417

    Article  CAS  Google Scholar 

  11. McCarthy FM, Cooksey AM, Burgess SC (2009) Sequential detergent extraction prior to mass spectrometry analysis. Methods Mol Biol 528:110–118

    Article  Google Scholar 

  12. McCarthy FM, Burgess SC, van den Berg BH et al (2005) Differential detergent fractionation for non-electrophoretic eukaryote cell proteomics. J Proteome Res 4:316–324

    Article  CAS  Google Scholar 

  13. Lawson EL, Clifton JG, Huang F et al (2006) Use of magnetic beads with immobilized monoclonal antibodies for isolation of highly pure plasma membranes. Electrophoresis 27:2747–2758

    Article  CAS  Google Scholar 

  14. Ghosh D, Krokhin O, Antonovici M et al (2004) Lectin affinity as an approach to the proteomic analysis of membrane glycoproteins. J Proteome Res 3:841–850

    Article  CAS  Google Scholar 

  15. Robinson JM, Ackerman WE, Tewari AK et al (2009) Isolation of highly enriched apical plasma membranes of the placental syncytiotrophoblast. Anal Biochem 387:87–94

    Article  CAS  Google Scholar 

  16. Simonson AB, Schnitzer JE (2007) Vascular proteomic mapping in vivo. J Thromb Haemost 5(Suppl 1):183–187

    Article  Google Scholar 

  17. Wollscheid B, Bausch-Fluck D, Henderson C et al (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat Biotechnol 27:378–386

    Article  CAS  Google Scholar 

  18. Scheurer SB, Roesli C, Neri D et al (2005) A comparison of different biotinylation reagents, tryptic digestion procedures, and mass spectrometric techniques for 2-D peptide mapping of membrane proteins. Proteomics 5:3035–3039

    Article  CAS  Google Scholar 

  19. Rybak JN, Ettorre A, Kaissling B et al (2005) In vivo protein biotinylation for identification of organ-specific antigens accessible from the vasculature. Nat Methods 2:291–298

    Article  CAS  Google Scholar 

  20. Scheurer SB, Rybak JN, Roesli C et al (2005) Identification and relative quantification of membrane proteins by surface biotinylation and two-dimensional peptide mapping. Proteomics 5:2718–2728

    Article  CAS  Google Scholar 

  21. Elia G (2010) Protein biotinylation. Curr Protoc Protein Sci. Chapter 3:Unit 3.6

    Google Scholar 

  22. Elia G (2008) Biotinylation reagents for the study of cell surface proteins. Proteomics 8:4012–4024

    Article  CAS  Google Scholar 

  23. Yu M-J, Pisitkun T, Wang G et al (2006) LC-MS/MS analysis of apical and basolateral plasma membranes of rat renal collecting duct cells. Mol Cell Proteomics 5:2131–2145

    Article  CAS  Google Scholar 

  24. Gottardi CJ, Dunbar LA, Caplan MJ (1995) Biotinylation and assessment of membrane polarity: caveats and methodological concerns. Am J Phys 268:F285–F295

    CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Giuliano Elia .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Elia, G. (2019). Cell Surface Protein Biotinylation for SDS-PAGE Analysis. In: Kurien, B., Scofield, R. (eds) Electrophoretic Separation of Proteins. Methods in Molecular Biology, vol 1855. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8793-1_37

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-8793-1_37

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-8792-4

  • Online ISBN: 978-1-4939-8793-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics