Abstract
Surface plasmon resonance (SPR) is now widely embraced as a technology for monitoring a diverse range of protein-protein interactions and is considered almost de rigueur for characterizing antibody-antigen interactions. The technique obviates the need to label either of the interacting species, and the binding event is visualized in real time. Thus, it is ideally suited for screening crude, unpurified antibody samples that dominate early candidate panels following antibody selection campaigns. SPR returns not only concentration and affinity data but when used correctly can resolve the discrete component kinetic parameters (association and dissociation rate constants) of the affinity interaction. Herein, we outline some SPR-based generic antibody screening configurations and methodologies in the context of expediting data-rich ranking of candidate antibody panels and ensuring that antibodies with the optimal kinetic binding characteristics are reliably identified.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Hearty S, O’Kennedy R (2011) Exploiting recombinant antibodies in point-of-care (POC) diagnostics: the combinatorial advantage. Bioeng Bugs 2(3):1–5
Foote J, Eisen HN (1995) Kinetic and affinity limits on antibodies produced during immune responses. Proc Natl Acad Sci 92(5):1254–1256
Batista FD, Neuberger MS (2000) B cells extract and present immobilized antigen: implications for affinity discrimination. EMBO J 19:513–520
Rader C (1997) Barbas III CF phage display of combinatorial antibody libraries. Curr Opin Biotechnol 8(4):503–508
Boder ET, Midelfort KS, Wittrup KD (2000) Directed evolution of antibody fragments with monovalent femtomolar antigen-binding affinity. Proc Natl Acad Sci 97(20):10701–10705
Steckbeck JD, Orlov I, Chow C, Grieser H, Miller K, Bruno J, Robinson JE, Montelaro RC, Cole KS (2005) Kinetic rates of antibody binding correlate with neutralization sensitivity of variant simian immunodeficiency virus strains. J Virology 79(19):12311–12320
Hearty S, Conroy PJ, Vijayalakshmi Ayyar B, Byrne B, O’Kennedy R (2010) Surface plasmon resonance for vaccine design and efficacy studies: recent applications and future trends. Exp Rev Vaccines 9(6):645–664
Ma H, O’Kennedy R (2016) Generation and optimisation of antibodies for biosensor applications. Institution of Engineering and Technology (IET) press.:209–230
Nagata K, Handa H (2000) Real-time analysis of biomolecular interactions. Springer-Verlag, Tokyo, pp 26–27
SPR-pages (2017) SPR Instruments. https://www.sprpages.nl/instruments
Leonard P, Hayes CJ, O’Kennedy R (2011) Rapid temperature-dependent antibody ranking using Biacore A100. Anal Biochem 409(2):290–292
Conroy PJ, O’Kennedy RJ, Hearty S (2012) Cardiac troponin I: a case study in rational antibody design for human diagnostics. Protein Eng Des Sel 25(6):295–305
Säfsten P (2009) Epitope mapping by surface plasmon resonance. Methods Mol Biol 524:67–76
Pola E, Roosa H, Markeya F, Elwingera F, Shawb A, Karlssona R (2016) Evaluation of calibration-free concentration analysis provided by Biacore™ systems. Anal Biochem 510:88–97
Etayash H, Jiang K, Azmi S, Thundat T, Kaura K (2015) Real-time detection of breast cancer cells using peptide-functionalized microcantilever arrays. Sci Rep 5:13967
Kari OK, Rojalin T, Salmaso S, Barattin M, Jarva H, Meri S, Yliperttula M, Viitala T, Urtti A (2017) Multi-parametric surface plasmon resonance platform for studying liposome-serum interactions and protein corona formation. Drug Deliv Transl Res 7(2):228–240
Liu P, Viitala T, Kartal-Hodzic A, Liang H, Laaksonen T, Hirvonen J, Peltonen L (2015) Interaction studies between indomethacin nanocrystals and PEO/PPO copolymer stabilizers. Pharm Res 32(2):628–639
Rezabakhsh A, Nabat E, Yousefi M, Montazersaheb S, Cheraghi O, Mehdizadeh A, Fathi F, Movassaghpour AA, Maleki-Dizaji N, Rahbarghazi R, Garjani A (2017) Endothelial cells' biophysical, biochemical, and chromosomal aberrancies in high-glucose condition within the diabetic range. Cell Biochem Funct 35(2):83–97
Yordanov G, Gemeiner P, Katrlík J (2016) Study of interactions between blood plasma proteins and poly(butyl cyanoacrylate) drug nanocarriers by surface plasmon resonance. Colloids Surf A Physicochem Eng Asp 510:309–316
Choi YS, Moon JH, Kim TG, Lee JY (2016) Potent in vitro and in vivo activity of p antibody specific for Porphyromonas gingivalis fimA. Clin Vaccine Immunol 23(4):346–352
Wen X, Pickens J, Mousa JJ, Leser GP, Lamb RA, Crowe JE Jr, Jardetzky TS (2016) A chimeric pneumovirus fusion protein carrying neutralizing epitopes of both MPV and RSV. PLoS One 11(5):e0155917
Gupta S, Hirota M, Waugh SM, Murakami I, Suzuki T, Muraguchi M, Shibamori M, Ishikawa Y, Jarvis TC, Carter JD, Zhang C, Gawande B, Vrkljan M, Janjic N, Schneider DJ. (2014) Chemically modified DNA aptamers bind interleukin-6 with high affinity and inhibit signaling by blocking its interaction with interleukin-6 receptor. J Biol Chem 289(12):8706-8719
Chardin H, Mercier K, Frydman C, Vollmer N (2014) Surface Plasmon resonance imaging: a method to measure the affinity of the antibodies in allergy diagnosis. J Immunol Methods 405:23–28
Zeidan E, Shivaji R, Henrich CV, Sandrosa GM (2016) Nano-SPRi aptasensor for the detection of progesterone in buffer. Sci Rep 6:26714
Aydin H, Sultana A, Li S, Thavalingam A, Lee EJ (2016) Molecular architecture of the human sperm IZUMO1 and egg JUNO fertilization complex. Nature 534:562–565
Liu C, Balsamo V, Sun D, Naja M, Wang X, Rosen B, Li CZ (2012) A 3D localized surface plasmon resonance biosensor for the study of trivalent arsenic binding to the ArsA ATPase. Biosens Bioelectron 38(1):19–26
Zagorodko O, Bouckaert J, Dumych T, Bilyy R, Larroulet I, Serrano AY, Dorta DA, Gouin SG, Dima SO, Oancea F, Boukherroub R, Szunerits S (2015) Surface plasmon resonance (SPR) for the evaluation of shear-force-dependent bacterial adhesion. Biosensors 5(2):276–287
Schmidt TP, Perna AM, Fugmann T, Böhm M, Hiss J, Haller S, Götz C, Tegtmeyer N, Hoy B, Rau TT, Neri D, Backert S, Schneider G, Wesslerb S (2016) Identification of E-cadherin signature motifs functioning as cleavage sites for Helicobacter pylori HtrA. Sci Rep 6:23264
Gebert LFR, Rebhan MAE, Crivelli SEM, Denzler R, Stoffe M, Hall J (2014) Miravirsen (SPC3649) can inhibit the biogenesis of miR-122. Nucleic Acids Res 42(1):609–621
Affinite instruments (2017) Application Notes. http://affiniteinstruments.com/p4spr-features/notes/
Baccara H, Mejria MB, Hafaiedha I, Ktaria T, Aounic M, Abdelghani A (2010) Surface plasmon resonance immunosensor for bacteria detection. Talanta 82(2):810–814
Riskin M, Tel-Vered R, Willner I (2010) Imprinted au-nanoparticle composites for the ultrasensitive surface plasmon resonance detection of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). Adv Mater 22:1387–1391
Stojanović I, Schasfoort RB, Terstappen LW (2014) Analysis of cell surface antigens by surface Plasmon resonance imaging. Biosens Bioelectron 52:36–43
Stojanović I, van der Velden TJ, Mulder HW, Schasfoort RB, Terstappen LW (2015) Quantification of antibody production of individual hybridoma cells by surface plasmon resonance imaging. Anal Biochem 485:112–118
McGurn LD, Moazami-Goudarzi M, White SA, Suwal T, Brar B, Tang JQ, Espie GS, Kimber MS (2016) The structure, kinetics and interactions of the β-carboxysomal β-carbonic anhydrase. Biochem J 473(24):4559–4572
Vachali P, Li B, Nelson K, Bernstein PS (2012) Surface plasmon resonance (SPR) studies on the interactions of carotenoids and their binding proteins. Arch Biochem Biophys 519(1):32–37
Yang X, Wang Z, Xiang Z, Li D, Hu Z, Cui W, Geng L, Fang Q (2017) Peptide probes derived from pertuzumab by molecular dynamics modeling for HER2-positive tumor imaging. PLoS Comput Biol 13(4):e1005441
Wang W, Wu J, Zhang X, Hao C, Zhao X, Jiao G, Shan X, Tai W, Yua G (2017) Inhibition of influenza a virus infection by fucoidan targeting viral neuraminidase and cellular EGFR pathway. Sci Rep 7:40760
Efimov GA, Kruglov AA, Khlopchatnikova ZV, Rozov FN, Mokhonov VV, Rose-John S, Scheller J, Gordon S, Stacey M, Drutskaya MS, Tillib SV, Nedospasov SA (2016) Cell-type-restricted anti-cytokine therapy: TNF inhibition from one pathogenic source. Proc Natl Acad Sci U S A 113(11):3006–3011
Bronner V, Denkberg G, Peled M, Elbaz Y, Zahavi E, Kasoto H, Reiter Y, Notcovich A, Bravman T (2010) Therapeutic antibodies: discovery and development using the ProteOn XPR36 biosensor interaction array system. Anal Biochem 406(2):147–156
Cummins E, Luxenberg DP, McAleese F, Widom A, Fennell BJ, Darmanin-Sheehan A, Whitters MJ, Bloom L, Gill G, Cunningham O (2008) A simple high-throughput purification method for hit identification in protein screening. J Immunol Methods 339(1):38–46
Cloutier SM, Couty S, Terskikh A, Marguerat L, Crivelli V, Pugnières M, Mani JC, Leisinger HJ, Mach JP, Deperthes D (2000) Streptabody, a high avidity molecule made by tetramerization of in vivo biotinylated, phage display-selected scFv fragments on streptavidin. Mol Immunol 37(17):1067–1077
Canziani GA, Klakamp S, Myszka DG (2004) Kinetic screening of antibodies from crude hybridoma samples using Biacore. Anal 325(2):301–307
Karlsson R (1999) Affinity analysis of non-steady-state data obtained under mass transport limited conditions using Biacore technology. J Mol Recognit 12:285–292
Ayyar BV, Hearty S, O’Kennedy R (2010) Highly sensitive recombinant antibodies capable of reliably differentiating heart-type fatty acid binding protein from noncardiac isoforms. Anal Biochem 407(2):165–171
Leonard P, Säfsten P, Hearty S, McDonnell B, Finlay W, O’Kennedy R (2007) High throughput ranking of recombinant avian scFv antibody fragments from crude lysates using the Biacore A100. J Immunol Methods 323(2):172–179
Acknowledgments
The authors gratefully acknowledge the technical contributions from C. J. Hayes, P. J. Conroy, and B. Vijayalakshmi Ayyar. This material is based on work supported by the Science Foundation Ireland (grants 10/CE/B1821 and 14/IA/2646) and Enterprise Ireland (grant CF/2015/0105).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Hearty, S., Leonard, P., Ma, H., O’Kennedy, R. (2018). Measuring Antibody-Antigen Binding Kinetics Using Surface Plasmon Resonance. In: Nevoltris, D., Chames, P. (eds) Antibody Engineering. Methods in Molecular Biology, vol 1827. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8648-4_22
Download citation
DOI: https://doi.org/10.1007/978-1-4939-8648-4_22
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-8647-7
Online ISBN: 978-1-4939-8648-4
eBook Packages: Springer Protocols