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miRNA Target Prediction in Plants

  • Noah Fahlgren
  • James C. CarringtonEmail author
Protocol
Part of the Methods in Molecular Biology book series (MIMB, volume 592)

Abstract

In plants, miRNA bind to target RNAs with a high degree of complementarity. In this chapter, a simple method for computationally predicting plant miRNA targets, using a position-dependent scoring system, is described.

Key words

MicroRNA miRNA Target prediction Plant Database search 

Notes

Acknowledgments

We are grateful that research on miRNA targets in our lab is supported by National Science Foundation Grant MCB-0618433. We thank Christopher M. Sullivan, Scott A. Givan, Kristin D. Kasschau, Edwards Allen and Jason S. Cumbie for productive discussions and advice.

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Copyright information

© Humana Press, a part of Springer Science+Business Media, LLC 2010

Authors and Affiliations

  1. 1.Department of Botany and Plant PathologyCenter for Genome Research and Biocomputing, Oregon State UniversityCorvallisUSA

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