Nomenclature, databases and bioinformatics in Immunogenetics

In this topical collection (13 articles)

1. Editorial

   Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics

   Can Kesmir, Ronald Bontrop Pages 1-3

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2. 

   Review

   Nomenclature report on the major histocompatibility complex genes and alleles of the laboratory rat (Rattus norvegicus)

   Lutz Walter Pages 5-8

3. Review

   A potential nomenclature for the Immuno Polymorphism Database (IPD) of chicken MHC genes: progress and problems

   Hassnae Afrache, Clive A. Tregaskes, Jim Kaufman Pages 9-24

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4. 

   Review

   Nomenclature report 2019: major histocompatibility complex genes and alleles of Great and Small Ape and Old and New World monkey species

   Natasja G. de Groot, Nel Otting, Giuseppe Maccari, James Robinson… Pages 25-36

5. 

   Review

   Nomenclature report for killer-cell immunoglobulin-like receptors (KIR) in macaque species: new genes/alleles, renaming recombinant entities and IPD-NHKIR updates

   Jesse Bruijnesteijn, Natasja G. de Groot, Nel Otting, Giuseppe Maccari… Pages 37-47

6. Review

   The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system

   Giuseppe Maccari, James Robinson, John A. Hammond, Steven G. E. Marsh Pages 49-55

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7. Review

   The Immune Epitope Database and Analysis Resource Program 2003–2018: reflections and outlook

   Sheridan Martini, Morten Nielsen, Bjoern Peters, Alessandro Sette Pages 57-76

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8. 

   Review

   An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity

   Ivan V. Zvyagin, Vasily O. Tsvetkov, Dmitry M. Chudakov, Mikhail Shugay Pages 77-84

9. 

   Review

   Update 2020: nomenclature and listing of celiac disease–relevant gluten epitopes recognized by CD4⁺ T cells

   Ludvig M. Sollid, Jason A. Tye-Din, Shuo-Wang Qiao, Robert P. Anderson… Pages 85-88

10. Review

    An Illumina approach to MHC typing of Atlantic salmon

    Arvind Y. M. Sundaram, Åse Helen Garseth, Giuseppe Maccari, Unni Grimholt Pages 89-100

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11. Review

    Characterization of the ferret TRB locus guided by V, D, J, and C gene expression analysis

    Bram Gerritsen, Aridaman Pandit, Fatiha Zaaraoui-Boutahar… Pages 101-108

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12. Review

    Revealing factors determining immunodominant responses against dominant epitopes

    Wannisa Ritmahan, Can Kesmir, Renske M.A. Vroomans Pages 109-118

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13. Review

    PIRCHE-II: an algorithm to predict indirectly recognizable HLA epitopes in solid organ transplantation

    Kirsten Geneugelijk, Eric Spierings Pages 119-129

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