The close proximity ofEscherichia coli genes: Consequences for stop codon and synonymous codon use Adam Eyre-Walker Articles Pages: 73 - 78
Low synonymous site variation at thelacY locus inEscherichia coli suggests the action of positive selection Robert R. WagnerMargaret A. Riley Articles Pages: 79 - 84
Alternative gene for biotin sulfoxide reduction inEscherichia coli K-12 Alice del Campillo CampbellAllan Campbell Articles Pages: 85 - 90
Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems Albert JeltschAlfred Pingoud Articles Pages: 91 - 96
Recombination between sequences of hepatitis B virus from different genotypes Paul L. BollykyAndrew RambautEdward C. Holmes Articles Pages: 97 - 102
Characterization of species-specifically amplified SINEs in three salmonid species—Chum salmon, pink salmon, and kokanee: The local environment of the genome may be important for the generation of a dominant source gene at a newly retroposed locus Nobuyoshi TakasakiLinda ParkNorihiro Okada Articles Pages: 103 - 116
A dimorphic Alu Sb-like insertion in COL3A1 is ethnic-specific Dianna M. MilewiczPeter H. ByersMadeleine Duvic Articles Pages: 117 - 123
Phylogenetic relationships and evolution of the Japanese Carabinae ground beetles based on mitochondrial ND5 gene sequences Zhi-Hui SuTakeshi OhamaSyozo Osawa Articles Pages: 124 - 129
Geography-linked phylogeny of theDamaster ground beetles inferred from mitochondrial ND5 gene sequences Zhi-Hui SuTakeshi OhamaSyozo Osawa Articles Pages: 130 - 134
Phylogenetic analyses of complete cytochromeb genes of the order Carnivora with particular emphasis on the Caniformia Christina LedjeUlfur Arnason Articles Pages: 135 - 144
comparison between the complete mitochondrial DNA sequences ofHomo and the common chimpanzee based on nonchimeric sequences Ulfur ArnasonXiufeng XuAnette Gullberg Articles Pages: 145 - 152
The mitochondrial genome of a monotreme—the platypus (Ornithrohynchus anatinus) Axel JankeNeil J. GemmellSvante Pääbo Articles Pages: 153 - 159
Complete DNA sequence of the mitochondrial genome ofCepaea nemoralis (Gastropoda: Pulmonata) J. A. TerrettS. MilesR. H. Thomas Articles Pages: 160 - 168
Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of piranhas Guillermo OrtíPaulo PetryAxel Meyer Articles Pages: 169 - 182
Evolutionary relationships of eukaryotic kingdoms Sudhir KumarAndrey Rzhetsky Articles Pages: 183 - 193
Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis Bart NelissenRaymond De BaereRupert De Wachter Articles Pages: 194 - 200
The evolution of stramenopiles and alveolates as derived by “substitution rate calibration» of small ribosomal subunit RNA Yves Van de PeerGert Van der AuweraRupert De Wachter Articles Pages: 201 - 210
Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order isopoda G. B. NunnB. F. TheisenP. Arctander Articles Pages: 211 - 223
Search for ancient patterns in protein sequences Guillermo ThodeJuan Antonio García-ReneaJuan Jimenez Articles Pages: 224 - 233
Parallel origins of the nucleosome core and eukaryotic transcription from Archaea Christos A. OuzounisNikos C. Kyrpides Articles Pages: 234 - 239
Replacement of nucleosomal histones by histone H1-like proteins during spermiogenesis in Cnidaria: Evolutionary implications Corinne RocchiniRoswitha M. MarxJuan Ausio Articles Pages: 240 - 246
Protein phylogeny of translation elongation factor EF-1α suggests microsporidians are extremely ancient eukaryotes Takashi KamaishiTetsuo HashimotoMasami Hasegawa Articles Pages: 257 - 263
Chiloscyllium plagiosum low-density lipoprotein receptor: Evolutionary conservation of five different functional domains Kamal D. MehtaRuixin ChangJames Norman Articles Pages: 264 - 272
Evolutionary analysis of the multigene pregnancy-specific β1-Glycoprotein family: Separation of historical and nonhistorical signals Patricia A. McLenachanPeter J. LockhartBrian C. Mansfield Articles Pages: 273 - 280
Relationships between bacterial drug resistance pumps and other transport proteins J. H. ParishJ. Bentley Articles Pages: 281 - 293
The effect of topology on estimates of among-site rate variation Jack SullivanKent E. HolsingerChris Simon Articles Pages: 308 - 312
Probabilistic reconstruction of ancestral protein sequences Jeffrey M. KoshiRichard A. Goldstein Articles Pages: 313 - 320
Intrastrand parity rules of DNA base composition and usage biases of synonymous codons Noboru Sueoka Erratum Pages: 323 - 323
