Learning directed acyclic graphs from large-scale genomics data Fabio NikolayMarius PesaventoNassos Typas Research Open access 20 September 2017 Article: 10
Bayesian inference for biomarker discovery in proteomics: an analytic solution Noura DridiAudrey GiremusPascal Roy Research Open access 14 July 2017 Article: 9
Review of stochastic hybrid systems with applications in biological systems modeling and analysis Xiangfang LiOluwaseyi OmotereEdward R. Dougherty Review Open access 30 June 2017 Article: 8
BCC-NER: bidirectional, contextual clues named entity tagger for gene/protein mention recognition Gurusamy MurugesanSabenabanu AbdulkadharJeyakumar Natarajan Research Open access 05 May 2017 Article: 7
From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data Danila VellaItalo ZoppisDario Di Silvestre Review Open access 20 March 2017 Article: 6
On biometric systems: electrocardiogram Gaussianity and data synthesis Wael LouisShahad AbdulnourDimitrios Hatzinakos Research Open access 21 February 2017 Article: 5
Biomedical informatics with optimization and machine learning Shuai HuangJiayu ZhouYang Shen Editorial Open access 08 February 2017 Article: 4
Autism spectrum disorder detection from semi-structured and unstructured medical data Jianbo YuanChester HoltzJiebo Luo Research Open access 01 February 2017 Article: 3
Reverse engineering gene regulatory networks from measurement with missing values Oyetunji E. OgundijoAbdulkadir ElmasXiaodong Wang Research Open access 10 January 2017 Article: 2
Graph reconstruction using covariance-based methods Nurgazy SulaimanovHeinz Koeppl Research Open access 23 November 2016 Article: 19
Towards organizing health knowledge on community-based health services Mohammad AkbariXia HuTat-Seng Chua Research Open access 17 November 2016 Article: 18
Enhancing interacting residue prediction with integrated contact matrix prediction in protein-protein interaction Tianchuan DuLi LiaoCathy H. Wu Research Open access 22 October 2016 Article: 17
Complex temporal topic evolution modelling using the Kullback-Leibler divergence and the Bhattacharyya distance Victor AndreiOgnjen Arandjelović Research Open access 29 September 2016 Article: 16
Stochastic convex sparse principal component analysis Inci M. BaytasKaixiang LinJiayu Zhou Research Open access 09 September 2016 Article: 15
Machine learning to predict rapid progression of carotid atherosclerosis in patients with impaired glucose tolerance Xia HuPeter D. Reaventhe ACT NOW Study Investigators Research Open access 05 September 2016 Article: 14
Detecting Visually Observable Disease Symptoms from Faces Kuan WangJiebo Luo Research Open access 31 August 2016 Article: 13
Heterogeneous multimodal biomarkers analysis for Alzheimer’s disease via Bayesian network Yan JinYi SuThe Alzheimer’s Disease Neuroimaging Initiative Research Open access 19 August 2016 Article: 12
A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLAB Shriprakash Sinha Research Open access 08 August 2016 Article: 1
A new method to detect event-related potentials based on Pearson’s correlation William GiroldiniLuciano PederzoliPatrizio Tressoldi Research Open access 07 June 2016 Article: 11
The prediction of virus mutation using neural networks and rough set techniques Mostafa A. SalamaAboul Ella HassanienAhmad Mostafa Research Open access 13 May 2016 Article: 10
Stochastic block coordinate Frank-Wolfe algorithm for large-scale biological network alignment Yijie WangXiaoning Qian Research Open access 08 April 2016 Article: 9
Inference of protein-protein interaction networks from multiple heterogeneous data Lei HuangLi LiaoCathy H. Wu Research Open access 19 February 2016 Article: 8
shRNA target prediction informed by comprehensive enquiry (SPICE): a supporting system for high-throughput screening of shRNA library Kenta KamatukaMasahiro HattoriTomoyasu Sugiyama Research Open access 19 February 2016 Article: 7
Gene expression analysis supports tumor threshold over 2.0 cm for T-category breast cancer Hiroko K. SolvangArnoldo FrigessiBettina K. Andreassen Research Open access 08 February 2016 Article: 6
Bayesian module identification from multiple noisy networks Siamak Zamani DadanehXiaoning Qian Research Open access 05 February 2016 Article: 5
Relationship between digital information and thermodynamic stability in bacterial genomes Dawit NigatuWerner HenkelGeorgi Muskhelishvili Research Open access 02 February 2016 Article: 4
Precise periodic components estimation for chronobiological signals through Bayesian Inference with sparsity enforcing prior Mircea DumitruAli Mohammad-DjafariSimona Baghai Sain Research Open access 20 January 2016 Article: 3
Incorporating prior knowledge induced from stochastic differential equations in the classification of stochastic observations Amin ZollanvariEdward R. Dougherty Research Open access 20 January 2016 Article: 2
Bayesian estimation of the discrete coefficient of determination Ting ChenUlisses M. Braga-Neto Research Open access 15 January 2016 Article: 1
Identification of Th1/Th2 regulatory switch to promote healing response during leishmaniasis: a computational approach Piyali GanguliSaikat ChowdhuryRam Rup Sarkar Research Open access 01 December 2015 Article: 13
Network inference through synergistic subnetwork evolution Lipi AcharyaRobert ReynoldsDongxiao Zhu Research Open access 27 November 2015 Article: 12
Carcinogenesis: alterations in reciprocal interactions of normal functional structure of biologic systems Garri Davydyan Research Open access 18 November 2015 Article: 11
Computing interaction probabilities in signaling networks Haitham GabrJuan Carlos Rivera-MuliaTamer Kahveci Research Open access 11 November 2015 Article: 10
Molecular network control through boolean canalization David MurrugarraElena S. Dimitrova Research Open access 04 November 2015 Article: 9
On optimal Bayesian classification and risk estimation under multiple classes Lori A. DaltonMohammadmahdi R. Yousefi Research Open access 24 October 2015 Article: 8
MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring Marzieh AyatiSinan ErtenMehmet Koyutürk Research Open access 30 June 2015 Article: 7
Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning Antti LarjoHarri Lähdesmäki Research Open access 20 June 2015 Article: 6
Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods Jie HouGary StaceyJianlin Cheng Research Open access 20 June 2015 Article: 5
Analysis of miRNA, mRNA, and TF interactions through network-based methods Pietro H GuzziMaria Teresa Di MartinoMario Cannataro Review Open access 04 June 2015 Article: 4
The post-genomic era of biological network alignment Fazle E FaisalLei MengTijana Milenković Review Open access 04 June 2015 Article: 3
40-Hz ASSR fusion classification system for observing sleep patterns Gulzar A KhuwajaSahar Javaher HaghighiDimitrios Hatzinakos Research Open access 05 February 2015 Article: 2
Optimal cancer prognosis under network uncertainty Mohammadmahdi R YousefiLori A Dalton Research Open access 27 January 2015 Article: 1
Modeling and systematic analysis of biomarker validation using selected reaction monitoring Esmaeil Atashpaz-GargariUlisses M Braga-NetoEdward R Dougherty Research Open access 15 November 2014 Article: 17
Simultaneous identification of robust synergistic subnetwork markers for effective cancer prognosis Navadon KhunlertgitByung-Jun Yoon Research Open access 06 November 2014 Article: 19
Discovering irregular pupil light responses to chromatic stimuli using waveform shapes of pupillograms Minoru NakayamaWioletta NowakYoshiaki Ichibe Research Open access 07 October 2014 Article: 18
Unbiased bootstrap error estimation for linear discriminant analysis Thang VuChao SimaEdward R Dougherty Research Open access 03 October 2014 Article: 15
Inference of dynamic biological networks based on responses to drug perturbations Noah BerlowLara DavisRanadip Pal Research Open access 25 September 2014 Article: 14
Wavelet analysis of frequency chaos game signal: a time-frequency signature of the C. elegans DNA Imen MessaoudiAfef Elloumi OueslatiZied Lachiri Research Open access 12 September 2014 Article: 16
Template-based intervention in Boolean network models of biological systems Michael P VerdicchioSeungchan Kim Research Open access 19 July 2014 Article: 11
Gene regulatory network inference and validation using relative change ratio analysis and time-delayed dynamic Bayesian network Peng LiPing GongChaoyang Zhang Research Open access 16 July 2014 Article: 12
