Volume 13, issue 1, December 2022
26 articles in this issue
-
-
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology
Authors (first, second and last of 43)
- Yongqun He
- Hong Yu
- Barry Smith
- Content type: Research
- Open Access
- Published: 21 October 2022
- Article: 25
-
Alignment of vaccine codes using an ontology of vaccine descriptions
Authors (first, second and last of 4)
- Benedikt FH Becker
- Jan A Kors
- Miriam CJM Sturkenboom
- Content type: Research
- Open Access
- Published: 18 October 2022
- Article: 24
-
Pathling: analytics on FHIR
Authors (first, second and last of 5)
- John Grimes
- Piotr Szul
- Kylynn Loi
- Content type: Software
- Open Access
- Published: 08 September 2022
- Article: 23
-
Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs
Authors (first, second and last of 5)
- Warren Manuel
- Rashmie Abeysinghe
- Licong Cui
- Content type: Research
- Open Access
- Published: 13 August 2022
- Article: 22
-
DCSO: towards an ontology for machine-actionable data management plans
Authors (first, second and last of 7)
- João Cardoso
- Leyla J. Castro
- José Borbinha
- Content type: Research
- Open Access
- Published: 26 July 2022
- Article: 21
-
Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature
Authors (first, second and last of 9)
- Samar Binkheder
- Heng-Yi Wu
- Lang Li
- Content type: Correction
- Open Access
- Published: 20 July 2022
- Article: 20
-
Performance assessment of ontology matching systems for FAIR data
Authors (first, second and last of 6)
- Philip van Damme
- Jesualdo Tomás Fernández-Breis
- Ronald Cornet
- Content type: Research
- Open Access
- Published: 15 July 2022
- Article: 19
-
Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research
Authors
- Lars Vogt
- István Mikó
- Thomas Bartolomaeus
- Content type: Research
- Open Access
- Published: 27 June 2022
- Article: 18
-
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature
Authors (first, second and last of 9)
- Samar Binkheder
- Heng-Yi Wu
- Lang Li
- Content type: Research
- Open Access
- Published: 11 June 2022
- Article: 17
-
Synthesizing evidence from clinical trials with dynamic interactive argument trees
Authors (first, second and last of 6)
- Olivia Sanchez-Graillet
- Christian Witte
- Philipp Cimiano
- Content type: Research
- Open Access
- Published: 03 June 2022
- Article: 16
This is part of 1 collection: -
Exploiting document graphs for inter sentence relation extraction
Authors
- Hoang-Quynh Le
- Duy-Cat Can
- Nigel Collier
- Content type: Research
- Open Access
- Published: 03 June 2022
- Article: 15
-
An annotated corpus of clinical trial publications supporting schema-based relational information extraction
Authors (first, second and last of 4)
- Olivia Sanchez-Graillet
- Christian Witte
- Philipp Cimiano
- Content type: Research
- Open Access
- Published: 23 May 2022
- Article: 14
-
SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks
Authors (first, second and last of 9)
- Lucas Emanuel Silva e Oliveira
- Ana Carolina Peters
- Claudia Maria Cabral Moro
- Content type: Research
- Open Access
- Published: 08 May 2022
- Article: 13
-
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic
Authors (first, second and last of 13)
- Núria Queralt-Rosinach
- Rajaram Kaliyaperumal
- COVID-19 LUMC Group
- Content type: Research
- Open Access
- Published: 25 April 2022
- Article: 12
-
Improving reusability along the data life cycle: a regulatory circuits case study
Authors (first, second and last of 7)
- Marine Louarn
- Fabrice Chatonnet
- Olivier Dameron
- Content type: Research
- Open Access
- Published: 28 March 2022
- Article: 11
-
Defining health data elements under the HL7 development framework for metadata management
Authors (first, second and last of 9)
- Zhe Yang
- Kun Jiang
- Peng Yang
- Content type: Research
- Open Access
- Published: 18 March 2022
- Article: 10
-
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data
Authors (first, second and last of 19)
- Rajaram Kaliyaperumal
- Mark D. Wilkinson
- Marco Roos
- Content type: Research
- Open Access
- Published: 15 March 2022
- Article: 9
-
Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma
Authors (first, second and last of 8)
- Amara Tariq
- Omar Kallas
- Imon Banerjee
- Content type: Research
- Open Access
- Published: 23 February 2022
- Article: 8
-
A multipurpose TNM stage ontology for cancer registries
Authors (first, second and last of 10)
- Nicholas Charles Nicholson
- Francesco Giusti
- Carmen Martos
- Content type: Software
- Open Access
- Published: 22 February 2022
- Article: 7
-
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction
Authors (first, second and last of 5)
- Raphaël Gazzotti
- Catherine Faron
- David Darmon
- Content type: Research
- Open Access
- Published: 22 February 2022
- Article: 6
-
Text mining-based measurement of precision of polysomnographic reports as basis for intervention
Authors (first, second and last of 7)
- Florent Baty
- Jemima Hegermann
- Martin Brutsche
- Content type: Research
- Open Access
- Published: 31 January 2022
- Article: 5
This is part of 1 collection: -
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation
Authors (first, second and last of 6)
- Max Schröder
- Susanne Staehlke
- Frank Krüger
- Content type: Research
- Open Access
- Published: 31 January 2022
- Article: 4
-
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature
Authors
- Bernd Müller
- Leyla Jael Castro
- Dietrich Rebholz-Schuhmann
- Content type: Research
- Open Access
- Published: 24 January 2022
- Article: 3
-
An annotated dataset for extracting gene-melanoma relations from scientific literature
Authors (first, second and last of 5)
- Roberto Zanoli
- Alberto Lavelli
- Fabio Rinaldi
- Content type: Research
- Open Access
- Published: 19 January 2022
- Article: 2
-
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach
Authors
- Sheeba Samuel
- Birgitta König-Ries
- Content type: Research
- Open Access
- Published: 06 January 2022
- Article: 1