Volume 25, issue 1, December 2024
211 articles in this issue
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StatiCAL: an interactive tool for statistical analysis of biomedical data and scientific valorization
Authors (first, second and last of 6)
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Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data
Authors
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Integrating transformers and many-objective optimization for drug design
Authors (first, second and last of 4)
This is part of 2 collections:
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dgfr: an R package to assess sequence diversity of gene families
Authors
This is part of 2 collections:
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RNA-clique: a method for computing genetic distances from RNA-seq data
Authors (first, second and last of 4)
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Equivariant score-based generative diffusion framework for 3D molecules
Authors (first, second and last of 5)
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A guided network estimation approach using multi-omic information
Authors (first, second and last of 4)
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LinG3D: visualizing the spatio-temporal dynamics of clonal evolution
Authors (first, second and last of 4)
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SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines
Authors (first, second and last of 7)
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Maboss for HPC environments: implementations of the continuous time Boolean model simulator for large CPU clusters and GPU accelerators
Authors (first, second and last of 4)
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Improving replicability in single-cell RNA-Seq cell type discovery with Dune
Authors (first, second and last of 10)
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PrCRS: a prediction model of severe CRS in CAR-T therapy based on transfer learning
Authors (first, second and last of 9)
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HMMF: a hybrid multi-modal fusion framework for predicting drug side effect frequencies
Authors (first, second and last of 6)
This is part of 2 collections:
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Semi-quantitative group testing for efficient and accurate qPCR screening of pathogens with a wide range of loads
Authors (first, second and last of 7)
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AMRViz enables seamless genomics analysis and visualization of antimicrobial resistance
Authors (first, second and last of 9)
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Correction: NanoBERTa-ASP: predicting nanobody paratope based on a pretrained RoBERTa model
Authors (first, second and last of 5)
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PrimerEvalPy: a tool for in-silico evaluation of primers for targeting the microbiome
Authors (first, second and last of 6)
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Multi-class boosting for the analysis of multiple incomplete views on microbiome data
Authors (first, second and last of 6)
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Neighborhood based computational approaches for the prediction of lncRNA-disease associations
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Machine learning based DNA melt curve profiling enables automated novel genotype detection
Authors (first, second and last of 10)
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OMD Curation Toolkit: a workflow for in-house curation of public omics datasets
Authors (first, second and last of 4)
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Biclustering analysis on tree-shaped time-series single cell gene expression data of Caenorhabditis elegans
Authors (first, second and last of 5)
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Prediction of anticancer drug sensitivity using an interpretable model guided by deep learning
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A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies
Authors (first, second and last of 7)
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Integrated approach to generate artificial samples with low tumor fraction for somatic variant calling benchmarking
Authors (first, second and last of 4)
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Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization
Authors (first, second and last of 6)
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Computer vision digitization of smartphone images of anesthesia paper health records from low-middle income countries
Authors (first, second and last of 4)
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ViroISDC: a method for calling integration sites of hepatitis B virus based on feature encoding
Authors (first, second and last of 7)
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Freeprotmap: waiting-free prediction method for protein distance map
Authors (first, second and last of 6)
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VCF2PCACluster: a simple, fast and memory-efficient tool for principal component analysis of tens of millions of SNPs
Authors (first, second and last of 8)
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Assessing the reliability of point mutation as data augmentation for deep learning with genomic data
Authors (first, second and last of 6)
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Exploring combinations of dimensionality reduction, transfer learning, and regularization methods for predicting binary phenotypes with transcriptomic data
Authors (first, second and last of 4)
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Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems
Authors (first, second and last of 4)
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Improvements in viral gene annotation using large language models and soft alignments
Authors (first, second and last of 6)
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Orthogonal multimodality integration and clustering in single-cell data
Authors (first, second and last of 6)
