A Computational model for compressed sensing RNAi cellular screening
Authors (first, second and last of 5)
Volume 13, issue 1, December 2012
337 articles in this issue
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Copy number variation signature to predict human ancestry
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Unlocking the potential of publicly available microarray data using inSilicoDb and inSilicoMerging R/Bioconductor packages
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Protein interface classification by evolutionary analysis
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RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures
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CYPSI: a structure-based interface for cytochrome P450s and ligands in Arabidopsis thaliana
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Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
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Fast detection of de novo copy number variants from SNP arrays for case-parent trios
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Generalization of the normal-exponential model: exploration of a more accurate parametrisation for the signal distribution on Illumina BeadArrays
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Comparison of co-expression measures: mutual information, correlation, and model based indices
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Improving stability and understandability of genotype-phenotype mapping in Saccharomyces using regularized variable selection in L-PLS regression
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A computational pipeline for the development of multi-marker bio-signature panels and ensemble classifiers
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A novel approach for biomarker selection and the integration of repeated measures experiments from two assays
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Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework
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Flexible and efficient genome tiling design with penalized uniqueness score
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Finding quasi-modules of human and viral miRNAs: a case study of human cytomegalovirus (HCMV)
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Multiple-platform data integration method with application to combined analysis of microarray and proteomic data
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On the contributions of topological features to transcriptional regulatory network robustness
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A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs
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TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
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CloudMan as a platform for tool, data, and analysis distribution
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Local functional descriptors for surface comparison based binding prediction
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EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information
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Core Hunter II: fast core subset selection based on multiple genetic diversity measures using Mixed Replica search
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Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools
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Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data
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An assessment on epitope prediction methods for protozoa genomes
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Estimating relative abundances of proteins from shotgun proteomics data
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Gains of ubiquitylation sites in highly conserved proteins in the human lineage
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Copy Number Variation detection from 1000 Genomes project exon capture sequencing data
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Improving protein coreference resolution by simple semantic classification
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Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model
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PolySac3DB: an annotated data base of 3 dimensional structures of polysaccharides
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Clustering of time-course gene expression profiles using normal mixture models with autoregressive random effects
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Human-specific protein isoforms produced by novel splice sites in the human genome after the human-chimpanzee divergence
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Improving accuracy for cancer classification with a new algorithm for genes selection
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Oculus: faster sequence alignment by streaming read compression
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Quantitative fluorescence loss in photobleaching for analysis of protein transport and aggregation
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iMS2Flux– a high–throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysis
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Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction
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Effective inter-residue contact definitions for accurate protein fold recognition
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Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching
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mGOASVM: Multi-label protein subcellular localization based on gene ontology and support vector machines
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The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement
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PAnalyzer: A software tool for protein inference in shotgun proteomics
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