Volume 14, Issue 1

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March 2022

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23 articles in this issue

A Review of Parallel Implementations for the Smith–Waterman Algorithm
Zeyu Xia
Yingbo Cui
Xiangke Liao
Review 06 September 2021 Pages: 1 - 14
Machine Learning Applications in Drug Repurposing
Fan Yang
Qi Zhang
Fuzhong Xue
Review 23 January 2022 Pages: 15 - 21
HTRPCA: Hypergraph Regularized Tensor Robust Principal Component Analysis for Sample Clustering in Tumor Omics Data
Yu-Ying Zhao
Cui-Na Jiao
Chun-Hou Zheng
Original Research Article 11 June 2021 Pages: 22 - 33
The Application of Convolutional Neural Network Model in Diagnosis and Nursing of MR Imaging in Alzheimer's Disease
Xiaoxiao Chen
Linghui Li
S. Vimal
Original research article 05 July 2021 Pages: 34 - 44
Similarity and Dissimilarity Regularized Nonnegative Matrix Factorization for Single-Cell RNA-seq Analysis
Ya-Li Zhu
Sha-Sha Yuan
Jin-Xing Liu
Original research article 06 July 2021 Pages: 45 - 54
Discovery of a Natural Product with Potent Efficacy Against SARS-CoV-2 by Drug Screening
Daixi Li
Cheng Wang
Dongqing Wei
Original research article 12 September 2021 Pages: 55 - 63
Target-Based In Silico Screening for Phytoactive Compounds Targeting SARS-CoV-2
Yong Zhao
Yu Tian
Yi Sheng
Original research article 25 July 2021 Pages: 64 - 79
Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis
Ying-Xian Goh
Yang He
Hong-Yu Ou
Original research article 18 October 2021 Pages: 80 - 88
Automatic Detection of Covid-19 with Bidirectional LSTM Network Using Deep Features Extracted from Chest X-ray Images
Kemal Akyol
Baha Şen
Original research article 27 July 2021 Pages: 89 - 100
LncRNA-Encoded Short Peptides Identification Using Feature Subset Recombination and Ensemble Learning
Siyuan Zhao
Jun Meng
Yushi Luan
Original research article 25 July 2021 Pages: 101 - 112
Deep Learning Based Capsule Neural Network Model for Breast Cancer Diagnosis Using Mammogram Images
T. Kavitha
Paul P. Mathai
S. Neelakandan
Original research article 02 August 2021 Pages: 113 - 129
Identification of Benign and Malignant Lung Nodules in CT Images Based on Ensemble Learning Method
Yifei Xu
Shijie Wang
Chuanliang Chen
Original research article 02 November 2021 Pages: 130 - 140
A Hierarchical Error Correction Strategy for Text DNA Storage
Xiangzhen Zan
Xiangyu Yao
Wenbin Liu
Original research article 31 August 2021 Pages: 141 - 150
Integrating Protein–Protein Interaction Networks and Somatic Mutation Data to Detect Driver Modules in Pan-Cancer
Hao Wu
Zhongli Chen
Quanzhong Liu
Original research article 07 September 2021 Pages: 151 - 167
Inferring Gene Regulatory Networks Using the Improved Markov Blanket Discovery Algorithm
Wei Liu
Yi Jiang
Huanrong Tang
Original research article 08 September 2021 Pages: 168 - 181
OTNet: A CNN Method Based on Hierarchical Attention Maps for Grading Arteriosclerosis of Fundus Images with Small Samples
Hang Bai
Li Gao
Jiaqiang Qi
Original research article 18 September 2021 Pages: 182 - 195
Anti-cancer Peptide Recognition Based on Grouped Sequence and Spatial Dimension Integrated Networks
Hongfeng You
Long Yu
Weidong Wu
Original research article 12 October 2021 Pages: 196 - 208
EnANNDeep: An Ensemble-based lncRNA–protein Interaction Prediction Framework with Adaptive k-Nearest Neighbor Classifier and Deep Models
Lihong Peng
Jingwei Tan
Liqian Zhou
Original research article 10 January 2022 Pages: 209 - 232
Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase
Qian Yu
Lefan Xie
Ting Shi
Original research article 26 October 2021 Pages: 233 - 244
Construction of a Pearson- and MIC-Based Co-expression Network to Identify Potential Cancer Genes
Dan Cao
Na Xu
Zheming Yuan
Original research article 25 October 2021 Pages: 245 - 257
PredAPP: Predicting Anti-Parasitic Peptides with Undersampling and Ensemble Approaches
Wei Zhang
Enhua Xia
Junfeng Xia
Original research article 04 October 2021 Pages: 258 - 268
Rhythmic Component Analysis Tool (RCAT): A Precise, Efficient and User-Friendly Tool for Circadian Clock Genes Analysis
Zhibo Liu
Meng Meng
Moli Huang
Short communication 09 August 2021 Pages: 269 - 278
SMART v1.0: A Database for Small Molecules with Functional Implications in Plants
Beilei Lei
Minggui Song
Chuang Ma
Short communication 14 October 2021 Pages: 279 - 283

Volume 14, Issue 1

A Review of Parallel Implementations for the Smith–Waterman Algorithm

Machine Learning Applications in Drug Repurposing

HTRPCA: Hypergraph Regularized Tensor Robust Principal Component Analysis for Sample Clustering in Tumor Omics Data

The Application of Convolutional Neural Network Model in Diagnosis and Nursing of MR Imaging in Alzheimer's Disease

Similarity and Dissimilarity Regularized Nonnegative Matrix Factorization for Single-Cell RNA-seq Analysis

Discovery of a Natural Product with Potent Efficacy Against SARS-CoV-2 by Drug Screening

Target-Based In Silico Screening for Phytoactive Compounds Targeting SARS-CoV-2

Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis

Automatic Detection of Covid-19 with Bidirectional LSTM Network Using Deep Features Extracted from Chest X-ray Images

LncRNA-Encoded Short Peptides Identification Using Feature Subset Recombination and Ensemble Learning

Deep Learning Based Capsule Neural Network Model for Breast Cancer Diagnosis Using Mammogram Images

Identification of Benign and Malignant Lung Nodules in CT Images Based on Ensemble Learning Method

A Hierarchical Error Correction Strategy for Text DNA Storage

Integrating Protein–Protein Interaction Networks and Somatic Mutation Data to Detect Driver Modules in Pan-Cancer

Inferring Gene Regulatory Networks Using the Improved Markov Blanket Discovery Algorithm

OTNet: A CNN Method Based on Hierarchical Attention Maps for Grading Arteriosclerosis of Fundus Images with Small Samples

Anti-cancer Peptide Recognition Based on Grouped Sequence and Spatial Dimension Integrated Networks

EnANNDeep: An Ensemble-based lncRNA–protein Interaction Prediction Framework with Adaptive k-Nearest Neighbor Classifier and Deep Models

Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase

Construction of a Pearson- and MIC-Based Co-expression Network to Identify Potential Cancer Genes

PredAPP: Predicting Anti-Parasitic Peptides with Undersampling and Ensemble Approaches

Rhythmic Component Analysis Tool (RCAT): A Precise, Efficient and User-Friendly Tool for Circadian Clock Genes Analysis

SMART v1.0: A Database for Small Molecules with Functional Implications in Plants

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