Abstract
Several firefly luciferases eliciting light emission in the yellow-green range of the spectrum and with distinct kinetic properties have been already cloned, sequenced, and characterized. Some of them are currently being applied as analytical reagents and reporter genes for bioimaging and biosensors, and more recently as potential color tuning indicators of intracellular pH and toxic metals. They were cloned from the subfamilies Lampyrinae (Photinini: Photinus pyralis, Macrolampis sp2; Cratomorphini: Cratomorphus distinctus), Photurinae (Photuris pennsylvanica), Luciolinae (Luciola cruciata, L. lateralis, L. mingrelica, L. italica, Hotaria parvula), and Amydetinae (Amydetes vivianii) occurring in different parts of the world. The largest number has been cloned from fireflies occurring in Brazilian biomes. Taking advantage of the large biodiversity of fireflies occurring in the Brazilian Atlantic rainforest, here we report the cloning and characterization of a novel luciferase cDNA from the Photurinae subfamily, Bicellonycha lividipennis, which is a very common firefly in marshlands in Brazil. As expected, multialignements and phylogenetic analysis show that this luciferase clusters with Photuris pennsylvanica adult isozyme, and with other adult lantern firefly luciferases, in reasonable agreement with traditional phylogenetic analysis. The luciferase elicits light emission in the yellow-green region, has kinetics properties similar to other adult lantern firefly luciferases, including pH- and metal sensitivities, but displays a lower sensitivity to nickel, which is suggested to be caused by the natural substitution of H310Y.
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Niwa, K., Ichino, Y., Kumata, S., Nakajima, Y., Hiraishi, Y., Kato, D. I., & Ohmiya, Y. (2010). Quantum yields and kinetics of the firefly bioluminescence reaction of beetle luciferases. Photochemistry and Photobiology, 86(5), 1046–1049.
Viviani, V. R. (2002). The origin, diversity, and structure function relationships of insect luciferases. Cellular and Molecular Life Sciences, 59(11), 1833–1850.
Wood, K. V. (1995). The chemical mechanism and evolutionary development of beetle bioluminescence. Photochemistry and Photobiology, 62(4), 662–673.
Seliger, H. H., & McElroy, W. D. (1964). The colors of firefly bioluminescence: enzyme configuration and species specificity. Proceedings of the National Academy of Sciences, 52(1), 75–81.
Viviani, V. R., & Bechara, E. J. H. (1995). Bioluminescence of Brazilian fireflies (Coleoptera: Lampyridae): spectral distribution and PH effect on luciferase-elicited colors. Comparison with elaterid and phengodid luciferases. Photochemistry and Photobiology, 62(3), 490–495.
Viviani, V. R., & Ohmiya, Y. (2006). Beetle luciferases: Colorful lights on biological processes and diseases. In S. Daunert & S. K. Deo (Eds.), Photoproteins in bioanalysis (pp. 49–63). Wiley.
Roda, A., Pasini, P., Mirasole, M., Michelini, E., & Guardigli, M. (2004). Biotechnological application of bioluminescence and chemiluminescence. Trends in Biotechnology, 22, 295–303.
Yeh, H., & Ai, H. (2019). Development and applications of bioluminescent and chemiluminescent reporters and biosensors. Annual Review of Analytical Chemistry, 12(9), 1–22.
Viviani, V. R., Rodrigues, J., & Lee Ho, P. (2021). A novel brighter bioluminescent fusion protein based on ZZ domain and amydetes vivianii firefly luciferase for immunoassays. Frontiers in bioengineering and biotechnology, 9, 1–8. https://doi.org/10.3389/fbioe.2021.755045
Gabriel, G. V., & Viviani, V. R. (2014). Novel application of as dual reporter genes for of intracellular pH and gene expression/location. Photochemical and Photobiological Sciences, 13, 1661–1670.
Gabriel, G. V. M., & Viviani, V. R. (2016). Engineering the metal sensitive sites in Macrolampis sp2 firefly luciferase and use as a novel bioluminescent ratiometric biosensor for heavy metals. Analytical and Bioanalytical Chemistry, 408(30), 8881–8893.
Yang, W., Kubota, H., Yamada, N., Irie, T., & Akiyama, H. (2011). Quantum yields and quantitative spectra of firefly bioluminescence with various bivalent metal ions. Photochemistry and Photobiology, 87, 846–852.
Sala-Newby, G. B., Thomson, C. M., & Campbell, A. K. (1996). Sequence and biochemical similarities between the luciferases of the glow-worm Lampyris noctiluca and the firefly Photinus pyralis. Biochemical Journal, 313(3), 761–767.
Alipour, B. S., Hosseinkhani, S., Nikkhah, M., Naderi- Manesh, H., Chaichi, M. J., & Osaloo, S. K. (2004). Molecular cloning, sequence analysis, and expression of a cDNA encoding the luciferase from the glow-worm, Lampyris turkestanicus. Biochemical and Biophysical Research Communications, 325, 215–222.
De Wet, J. R., Wood, K. V., Helinski, D. R., & DeLuca, M. (1985). Cloning of firefly luciferase cDNA and the expression of active luciferase in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, 82(23), 7870–7873.
Viviani, V. R., Ohelmeyer, T. L., Arnoldi, F. G. C., & Brochetto-Braga, M. R. (2005). A new firefly luciferase with bimodal spectrum: Identification of structural determinants of spectral sensitivity in firefly luciferases. Photochemistry and Photobiology, 81, 843–848. https://doi.org/10.1562/2004-12-09-RA-398R.1
Viviani, V. R., Arnoldi, F. G. C., Brochetto-Braga, M. R., & Ohmiya, Y. (2004). Cloning and characterization of the cDNA for the Brazilian Cratomorphus distinctus larval firefly luciferase: Similarities with the European Lampyris noctiluca and Asiatic Pyrocoelia luciferases. Comparative Biochmistry and Physiology, 139, 151–156.
Carvalho, M. C., Tomazini, A., Amaral, D. T., Murakami, M. T., & Viviani, V. R. (2020). Luciferase isozymes from the Brazilian Aspisoma lineatum (Lampyridae) firefly: origin of efficient pH-sensitive lantern luciferases from fat body pH-insensitive ancestors. Photochemical and Photobiological Sciences, 11, 1–15. https://doi.org/10.1039/d0pp00272k
Branchini, B. R., Southworth, T. L., Salituro, L. J., Fontaine, D. M., & Oba, Y. (2017). Cloning of the blue ghost (Phausis reticulata) luciferase reveals a glowing source of green light. Photochemistry and Photobiology, 93, 473–478.
Ye, L., Buck, L. M., Schaeffer, H. J., & Leach, F. R. (1997). Cloning and sequencing of a cDNA for firefly luciferase from Photuris pennsylvanica. Biochimica et Biophysica Acta, 1339(1), 39–52.
Masuda, T., Tatsumi, H., & Nakano, E. (1989). Cloning and sequence analysis of cDNA for luciferase of a Japanese firefly, Luciola cruciata. Gene, 77(2), 265–270.
Cho, K. H., Lee, J. S., Choi, Y. D., & Boo, K. S. (1999). Structural polymophism of the luciferase gene in the firefly, Luciola lateralis. Insect Molecular Biology, 8(2), 193–200.
Tatsumi, H., Kajiyama, N., & Nakano, E. (1992). Molecular cloning and expression in Escherichia coli of a cDNA clone encoding luciferase of a firefly, Luciola lateralis. Biochimica et Biophysica Acta, 1131(2), 161–165.
Devine, J. H., Kutuzova, G. D., Green, V. A., Ugarova, N. N., & Baldwin, T. O. (1993). Luciferase from the East European firefly Luciola mingrelica: Cloning and nucleotide sequence of the cDNA, overexpression in Escherichia coli and purification of the enzyme. Biochimica et Biophysica Acta, 1173(2), 121–132.
Branchini, B. R., Southworth, T. L., DeAngelis, J. P., Roda, A., & Michelini, E. (2006). Luciferase from the Italian firefly Luciola italica: Molecular cloning and expression. Comparative Biochemistry and Physiology B, 145(2), 159–167.
Ohmiya, Y., Ohba, N., Toh, H., & Tsuji, F. I. (1995). Cloning, expression and sequence analysis of cDNA for the luciferases from the japanese fireflies, Pyrocoelia tniyako and Hotaria parvula. Photochemistry and Photobiology, 62(2), 309–313.
Viviani, V. R., Amaral, D., Prado, R. A., & Arnoldi, F. G. C. (2011). A new blue-shifted luciferase from the Brazilian Amydetes fanestratus (Coleoptera: Lampyridae) firefly: Molecular evolution and structural/functional properties. Photochemical and Photobiological Sciences, 10, 1879–1886. https://doi.org/10.1039/C1PP05210A
Bessho-Uehara, M., Konishi, K., & Oba, Y. (2017). Biochemical characteristics and gene expression profiles of two paralogous luciferases from the Japanese firefly Pyrocoelia atripennis (Coleoptera, Lampyridae, Lampyrinae): Insight into the evolution of firefly luciferase genes. Photochemical and Photobiological Sciences, 16, 1301–1310.
Carrasco-López, C., Ferreira, J. C., Lui, N. M., Schramm, S., Berraud-Pache, R., Navizet, I., & Rabeh, W. M. (2018). Beetle luciferases with naturally red- and blue-shifted emission. Life Science Alliance, 1(4), 1–10.
Conti, E., Franks, N. P., & Brick, P. (1996). Crystal structure of firefly luciferase throws light on a super-family of adenylate-forming enzymes. Structure, 4(3), 287–298.
Kheirabadi, M., Sharafian, Z., Naderi-Manesh, H., Heineman, U., Gohlke, U., & Hosseinkhani, S. (2013). Crystal structure of native and a mutant of Lampyris turkestanicus luciferase implicate in bioluminescence color shift. Biochimica et Biophysica Acta - Proteins and Proteomics, 1834(12), 2729–2735.
Nakatsu, T., Ichiyama, S., Hiratake, J., Saldanha, A., Kobashi, N., Sakata, K., & Kato, H. (2006). Structural basis for the spectral difference in luciferase bioluminescence. Nature, 440(7082), 372–376.
Branchini, B. R., Magyar, R. A., Murtiashaw, M. H., Anderson, S. M., & Zimmer, M. (1998). Site-directed mutagenesis of Histidine 245 in firefly luciferase: A proposed model of the active site. Biochemistry, 37, 15311–15319.
Branchini, B. R., Southworth, T. L., Murtiashaw, M. H., Boije, H., & Fleet, S. E. (2003). A mutagenesis study of the luciferin binding site residues of firefly luciferase. Biochemistry, 42, 10429–10436. https://doi.org/10.1021/bi030099x
Kajiyama, N., & Nakano, E. (1991). Isolation and characterization of mutants of firefly luciferase which produce different colors of light. Protein Engineering, 4, 691–693.
Koksharov, M. I., & Ugarova, N. N. (2011). Thermostabilization of firefly luciferase by in vivo directed evolution. Protein Engineering, Design and Selection, 24, 835–844.
Sandalova, T. P., & Ugarova, N. N. (1999). Model of the active site of firefly luciferase. Biochemistry (Moscow Russian, Federation), 64, 962–967.
Viviani, V. R., Uchida, A., Viviani, A., & Ohmiya, Y. (2002). The influence of Ala243(Gly247), Arg 215 and Thr226(Asn230) on the bioluminescence spectra and pH-sensitivity of railroad worm, click beetle and firefly luciferases. Photochemical and Photobiological Sciences, 76, 538–544.
Viviani, V. R., et al. (2006). Active-site properties of Phrixotrix railroad worm green and red bioluminescence-eliciting luciferases. The Journal of Biochemistry, 140, 467–474.
Viviani, V. R., Silva Neto, A. J., Arnoldi, F. C., Barbosa, J. A., & Ohmiya, Y. (2008). The influence of the loop between residues 223–235 in beetle luciferases bioluminescence spectra: A solvent gate for the active site of pH-sensitive luciferases. Photochemistry and Photobiology, 83, 138–144.
Viviani, V. R., Amaral, D. T., Neves, D. R., Simões, A., & Arnoldi, F. G. C. (2013). The luciferin binding site residues C/T311 (S314) influence the bioluminescence color of beetle luciferase through main-chain interaction with oxyluciferin phenolate. Biochemistry, 52, 19–27.
Viviani, V. R., & Ohmiya, Y. (2000). Bioluminescence color determinants of Phrixothrix railroadworm luciferases: Chimeric luciferases, site- directed mutagenesis of Arg215 and guanidine effect. Photochemical and Photobiological Sciences, 72, 267–271.
Viviani, V. R., Gabriel, G. V. M., Bevilaqua, V. R., Simões, A. F., Hirano, T., & Lopes-de-Oliveira, P. S. (2018). The proton and metal binding sites responsible for the pH-dependent green-red bioluminescence color tuning in firefly luciferases. Scientific Reports, 8(1), 1–14.
Pelentir, G. F., Bevilaqua, V. R., & Viviani, V. R. (2019). A highly efficient, thermostable and cadmium selective firefly luciferase suitable for ratiometric metal and pH-biosensing and for sensitive ATP assays. Photochemical and Photobiological Sciences, 18(8), 2061–2070.
Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95–98.
Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, S., Wilkins, M. R., Appel, R. D., & Bairoch, A. (2005). Protein identification and analysis tools on the ExPASy server. The proteomics protocols handbook (pp. 571–607). London: Humana Press.
Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D. L., Darling, A., Höhna, S., & Huelsenbeck, J. P. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61(3), 539–542.
Katoh, K., Kuma, K. I., Toh, H., & Miyata, T. (2005). MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Research, 33(2), 511–518.
Minh, B. Q., Schmidt, H. A., Chernomor, O., Schrempf, D., Woodhams, M. D., Von Haeseler, A., & Lanfear, R. (2020). IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Molecular Biology and Evolution, 37(5), 1530–1534.
Gould, S. J., Keller, G.-A., & Subramani, S. (1987). Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase. Journal of Cell Biology, 105, 2923–2931.
Gould, S. J., Keller, G.-A., Hosken, N., Wilkinson, J., & Subramani, S. (1989). A Conserved Tripeptide Sorts Proteins to Peroxisomes. Journal of Cell Biology, 108, 1657–1664.
Gould, S. J., Keller, G.-A., Schneider, M., Howell, S. H., Garrard, L. J., Goodman, J. M., Distel, B., Tabak, H., & Subramani, S. (1990). Peroxisomal protein import is conserved between yeast, plants, insects and mammals. The EMBO Journal, 9(1), 85–90.
Amaral, D. T., Arnoldi, F. G. C., Rosa, S. P., & Viviani, V. R. (2014). Molecular phylogeny of neotropical bioluminescent beetles (Coleoptera: Elateroidea) in southern and central Brazil. Luminescence, 29(5), 412–422.
Kutuzova, G. D., Hannah, R. H., & Wood, K. V. (2022). Bioluminescence color variation and kinetic behavior relationship among beetle luciferases. In: Bioluminescence and Chemiluminescence: Molecular Reporting with Photons, Proceedings of 9th International Symposium of Bioluminescence and Chemiluminescence, pp. 248–252.
Viviani, V. R., Silva, A. C. R., Perez, G. L. O., Santelli, R. V., Bechara, E. J. H., & Reinach, F. C. (1999). Molecular cloning and characterization of cDNA for the larval Pyrearinus termitilluminans luciferase. Photochemistry and Photobiology, 70, 254–260.
Viviani, V. R., Bechara, E. J. H., & Ohmiya, Y. (1999). Cloning, sequence analysis and expression of cDNAs for Phrixothrix railroad worm luciferases: Relationship between bioluminescence spectra and primary structures. Biochemistry, 38, 8271–8279.
Funding
This research was funded by Fundação de Amparo à Pesquisa do Estado de São Paulo, Grant no [2010/05426-8], Conselho Nacional de Desenvolvimento Científico e Tecnológico, Grant no [401.867/2016-1].
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Moreira, A.C., Amaral, D.T., Gabriel, G.V.M. et al. Cloning and molecular properties of a novel luciferase from the Brazilian Bicellonycha lividipennis (Lampyridae: Photurinae) firefly: comparison with other firefly luciferases. Photochem Photobiol Sci 21, 1559–1571 (2022). https://doi.org/10.1007/s43630-022-00240-0
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DOI: https://doi.org/10.1007/s43630-022-00240-0