Abstract
We analyzed the excited-state structures and emission spectra of firefly emitter, the anionic keto form of firefly oxyluciferin(keto-1), determined by the time dependent-density functional theory(TD-DFT) approach. The analysis is based on a direct comparison with the highly correlated CASSCF(MS-CASPT2) ab initio approach. 49 DFT functionals were considered and applied to the study. Among the tested functionals, mPW3PBE, B3PW91 and B3P86 give the best performance for ground-state geometry, absorption spectrum, excite-state geometry and emission spectrum.
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Fraga H., Photochem. Photobiol. Sci., 2008, 7, 146
Roda A., Pasini P., Mirasoli, M., Michelini E., Guardigli M., Trends Biotechnol., 2004, 22, 295
Branchini B. R., Murtiashaw M. H., Magyar R. A., Portier N. C., Ruggiero M. C., Stroh J. G., J. Am. Chem. Soc., 2002, 124, 2112
Branchini B. R., Southworth T. L., Murtiashaw M. H., Magyar R. A., Gonzalez S. A., Ruggiero M. C., Stroh J. G., Biochemistry, 2004, 43, 7255
Wood K. V., Photochem. Photobiol., 1995, 62, 662
Hastings J. W., Gene, 1996, 173, 5
Liu Y. J., de Vico L., Lindh R., J. Photochem. Photobiol. A, 2008, 194, 261
Navizet I., Liu Y. J., Ferré N., Xiao H. Y., Fang W. H., Lindh R., J. Am. Chem. Soc., 2010, 132, 706
Yang T., Goddard J. D., J. Phys. Chem. A, 2007, 111, 4489
Nakatani N., Hasegawa J. Y., Nakatsuji H., Chem. Phys. Lett., 2009, 469, 191
Nakatani N., Hasegawa J. Y., Nakatsuji H., J. Am. Chem. Soc., 2007, 129, 8756
Li Z. W., Min C. G., Ren A. M., Guo J. F., Goddard J. D., Feng J. K., Zuo L., Bull. Korean Chem. Soc., 2010, 31, 895
Li Z. W., Ren A. M., Guo J. F., Yang T., Goddard J. D., Feng J. K., J. Phys. Chem. A, 2008, 112, 9796
da Silva L. P., Esteves da Silva J. C. G., J. Comput. Chem., 2011, 32, 2654
Min C. G., Ren A. M., Guo J. F., Zou L. Y., Goddard J. D., Sun C. C., ChemPhysChem, 2010, 11, 2199
Jin J., Xu L., Guo S. J., Sun S. Y., Zhang S., Zhu C. L., Kong W., Jiang C. L., Chem. Res. Chinese Universities, 2012, 28(1), 91
Li Z. S., Zou L. Y., Ren A. M., Feng J. K., Chem. J. Chinese Universities, 2012, 33(12), 2757
Sun Y., Ren A. M., Li Z. S., Min C. G., Ren X. F., Feng J. K., Chem. J. Chinese Universities, 2011, 32(11), 2586
Serrano-Andrés L., Merchàn M., J. Mol. Struct.(Theochem.), 2005, 729, 99
Wada N., Sakai H., J. Biol. Phys., 2005, 31, 403
Sundholm D., Chem. Phys. Lett., 1999, 302, 480
Furche F., Ahlrichs R., Wachsmann C., Weber E., Sobanski A., Vogtle F., Grimme S., J. Am. Chem. Soc., 2000, 122, 1717
Dreuw A., Dunietz B. D., Head-Gordon M., J. Am. Chem. Soc., 2002, 124, 12070
Dreuw A., Fleming G. R., Head-Gordon M., J. Phys. Chem. B, 2003, 107, 6500
Frisch M. J., Trucks G. W., Schlegel H. B., et al., Gaussian 09, Revision A.02, Gaussian Inc., Wallingford CT, 2009
Grimme S., J. Comp. Chem., 2006, 27, 1787
Becke A. D., Phys. Rev. A, 1988, 38, 3098
Perdew J. P., Burke K., Ernzerhof M., Phys. Rev. Lett., 1996, 77, 3865
Perdew J. P., Eds.; Ziesche P., Eschig H., Electronic Structure of Solids’ 91, Akademie Verlag, Berlin, 1991, 11
Hamprecht F. A., Cohen A., Tozer D. J., Handy N. C., J. Chem. Phys., 1998, 109, 6264
Boese A. D., Doltsinis N. L., Handy N. C., Sprik M., J. Chem. Phys., 2000, 112, 1670
Boese A. D., Handy N. C., J. Chem. Phys., 2001, 114, 5497
Lee C., Yang W., Parr R. G., Phys. Rev. B, 1988, 37, 785
Adamo C., Barone V., J. Chem. Phys., 1998, 108, 664
Handy N. C., Cohen A., J. Mol. Phys., 2001, 99, 403
Hoe W. M., Cohen A. J., Handy N. C., Chem. Phys. Lett., 2001, 341, 319
Becke A. D., J. Chem. Phys., 1996, 104, 1040
Zhao Y., Truhlar D. G., J. Chem. Phys., 2006, 125, 194101
Boese A. D., Handy N. C., J. Chem. Phys., 2002, 116, 9559
van Voorhis T., Scuseria G. E., J. Chem. Phys., 1998, 109, 400
Perdew J. P., Phys. Rev. B, 1986, 33, 8822
Schmider H. L., Becke A. D., J. Chem. Phys., 1998, 108, 9624
Wilson P. J., Bradley T. J., Tozer D. J., J. Chem. Phys., 2001, 115, 9233
Becke A. D., J. Chem. Phys., 1993, 98, 1372
Henderson T. M., Izmaylov A. F., Scalmani G., Scuseria G. E., J. Chem. Phys., 2009, 131, 044108
Becke A. D., J. Chem. Phys., 1997, 107, 8554
Zhao Y., Truhlar D. G., J. Phys. Chem. A, 2004, 108, 6908
Xu X., Goddard III W. A., Proc. Natl. Acad. Sci. USA, 2004, 101, 2673
Zhao Y., Lynch B. J., Truhlar D. G., J. Phys. Chem. A, 2004, 108, 2715
Boese A. D., Martin J. M. L., J. Chem. Phys., 2004, 121, 3405
Zhao Y., Truhlar D. G., Theor. Chem. Acc., 2008, 120, 215
Zhao Y., Truhlar D. G., J. Phys. Chem. A, 2006, 110, 5121
Yanai T., Tew D. P., Handy N. C., Chem. Phys. Lett., 2004, 393, 51
Chai J. D., Head-Gordon M., J. Chem. Phys., 2008, 128, 084106
Chai J. D., Head-Gordon M., Phys. Chem. Chem. Phys., 2008, 10, 6615
Ugarova N. N., J. Biolumin. Chemilumin., 1989, 4, 406
Viviani V. R., Bechara E. J. H., Photochem. Photobiol., 1995, 62, 490
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Supported by the National Natural Science Foundation of China(Nos.21173099, 20973078, 51164017), the Applied Basic Research Plans Program of Yunnan Province, China(No.2011FZ040), the Scientific Research Fund of Yunnan Provincial Education Department, China(No.2012Y545), the Training Foundation for Talents of Kunming University of Science and Technology(No.KKSY201232040) and the Foundation of State Key Laboratory of Theoretical and Computational Chemistry, China.
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Min, Cg., Leng, Y., Yang, Xk. et al. TD-DFT accuracy in determining excited-state structures and fluorescence spectra of firefly emitter. Chem. Res. Chin. Univ. 29, 982–985 (2013). https://doi.org/10.1007/s40242-013-3050-6
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DOI: https://doi.org/10.1007/s40242-013-3050-6