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Plant growth promoting activities of rhizobacteria isolated from Podophyllum hexandrum growing in North-West regions of the Himalaya

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Abstract

A collection of 50 rhizospheric and 43 endorhizospheric bacteria was obtained from Podophyllum hexandrum grown in high hills of Churdhar, Himachal Pradesh, India and subjected to replica plating for one step screening of plant growth promoting (PGP) traits. After replica plating, 41 bacterial isolates simultaneously growing on Pikovskaya’s, Chrome-azurol-S, and Jensen’s medium were characterized for additional PGP traits. Of the total, 80.48 % isolates produced indole-3-acetic acid, 12.20 % produced HCN, 53.65 % exhibited chitinase and 41.46 % exhibited protease activity. In vitro inhibition of fungal pathogens viz., Alternaria solani, Fusarium oxysporum, Dematophora necatrix, Sclerotium rolfsii and Phytophthora spp. ranged from 44 % to 88 %. Twenty most efficient PGPR under in vitro conditions were evaluated for growth promotion of tomato in growth chamber. Significantly highest root length (43.00 mm), shoot length (73.00 mm), plant dry weight (12.90 mg plant−1) and vigour index (10,567.60) were recorded for isolate 2a1. The efficacy of isolate 2a1 was further evaluated under net house and resulted in remarkable increase in root length (58.02 %), shoot length (66.89 %), root dry weight (98.67 %), shoot dry weight (88.58 %), available nitrogen (31.89 %), phosphorus (22.15 %) and potassium (4.51 %) content in soil over untreated control. Remarkable increase was also recorded in nitrogen (11.85 %), phosphorus (23.08 %) and potassium (36.84 %) content of shoot biomass over control. Strain 2a1 was identified as Bacillus subtilis after biochemical and phylogenetic analysis. These results demonstrated that strain 2a1 from Podophyllum hexandrum exhibited multiple PGP attributes for development as a biofertilizer to enhance soil fertility and promote plant growth.

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References

  1. Thakur PS, Dutt V, Thakur A (2008) Impact of inter annual climate variability on the phenology of eleven multipurpose tree species. Curr Sci 94:1053–1057

    Google Scholar 

  2. Hill GT, Nitkowski NA, Aldrich WL, Emele LR, Jurkonie DD, Ficke A, Maldonado RS, Lynch V, Nelson EB (2000) Methods for assessing the composition and diversity of soil microbial communities. Appl Soil Microbiol 15:25–36

    Google Scholar 

  3. Tilak KVBR, Ranganayaki N, Pal KK, De R, Saxena AK, Shekhar Nautiyal C, Shilpi Mittal AK, Tripathi AK, Johri BN (2005) Diversity of plant growth and soil health supporting bacteria. Curr Sci 89:136–150

    CAS  Google Scholar 

  4. Glick BR (2012) Plant growth promoting bacteria: mechanisms and applications. Scientifica. doi:10.6064/2012/963401

    PubMed  PubMed Central  Google Scholar 

  5. Bakthavatchalu S, Shivakumar S, Sullia S (2012) Identification of multi-trait PGPR isolates and evaluation of their potential as biocontrol agents. Acta Biol Ind 1:61–67

    Google Scholar 

  6. Malleswari D, Bagyanarayana G (2013) In vitro screening of rhizobacteria isolated from the rhizosphere of medicinal and aromatic plants for multiple plant growth promoting activities. J Microbiol Biotechnol Res 3(1):84–91

    CAS  Google Scholar 

  7. Chauhan A, Balgir PP, Shirkot CK (2014) Characterization of Aneurinibacillus aneurinilyticus strain CKMV1 as a plant growth promoting rhizobacteria. Int J Agric Environ Biotechnol 7(1):37–45

    Article  Google Scholar 

  8. Herman MAB, Nault BA, Smart CD (2008) Effects of plant growth promoting rhizobacteria on bell pepper production and green peach aphid infestations in New York. Crop Prot 27:996–1002

    Article  Google Scholar 

  9. Ashrafuzzaman M, Akhtar HF, Ismail Razi M, Hoque M, Anamul ZI, Shahidullah MS (2009) Efficiency of plant growth-promoting rhizobacteria (PGPR) for the enhancement of rice growth. Afr J Biotechnol 8(7):1247–1252

    CAS  Google Scholar 

  10. Sharma R, Chauhan A, Shirkot CK (2015) Characterization of plant growth promoting Bacillus strains and their potential as crop protectants against Phytophthora capsici in tomato. Biol Agric Hortic. doi:10.1080/01448765-2015-1009860

    Google Scholar 

  11. Mehta P, Walia A, Kakkar N, Shirkot CK (2014) Tricalcium phosphate solubilisation by new endophyte Bacillus methylotrophicus CKAM isolated from apple root endosphere and its plant growth-promoting activities. Acta Physiol Plant 36(8):2033–2045

    Article  CAS  Google Scholar 

  12. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160:47–56

    Article  CAS  PubMed  Google Scholar 

  13. Pikovskaya RI (1948) Mobilization of phosphorus in soil in connection with the vital activity of some microbial species. Mikrobiologiya 7:362–370

    Google Scholar 

  14. Gorden SA, Paleg LG (1957) Observations on the quantitative determination of indole acetic acid. Physiol Plant 10:39–47

    Article  Google Scholar 

  15. Bray RH, Kurtz LT (1945) Determination of total organic and available forms of phosphorus in soils. Soil Sci 59:39–45

    Article  CAS  Google Scholar 

  16. Baker AW, Schippers B (1987) Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas sp. mediated plant growth stimulation. Soil Biol Biochem 19:451–457

    Article  Google Scholar 

  17. Robert WK, Selitrennikoff CP (1988) Plant and bacterial chitinase differ in antifungal activity. J Gen Microbiol 134:169–176

    Google Scholar 

  18. Fleming HP, Etchells JL, Costilus RH (1975) Microbial inhibition by an isolate of Pediococcus from cucumber brines. Appl Microbiol 30:1040–1042

    CAS  PubMed  PubMed Central  Google Scholar 

  19. Vincent JM (1947) Distortion of fungal hyphae in the presence of certain inhibitors. Nature 150:850

    Article  Google Scholar 

  20. Mortensen CN (1997) Seed bacteriology laboratory guide. Danish Government Institute of Seed Pathology for Developing Countries, Copenhagen

    Google Scholar 

  21. Hyun KR, Song HG (2007) Effect of application of Rhodopseudomonas sp. on seed germination and growth of tomato under axenic conditions. J Microbiol Biotechnol 17(11):1805–1810

    Google Scholar 

  22. Abdul-Baki AA, Anderson JD (1973) Vigour determination in soybean seed by multiple criteria. Crop Sci 13(6):630–633

    Article  Google Scholar 

  23. Subbiah BV, Asija GL (1956) A rapid procedure for the estimation of the available nitrogen in soils. Curr Sci 25:259–260

    CAS  Google Scholar 

  24. Olsen SRCV, Cole DS, Watenabe DS, Dean LA (1954) Estimation of available phosphorus in soils by extraction with sodium bicarbonate. USDS Circular, 939 pp

  25. Merwin HD, Peech M (1951) Exchange ability of soil potassium in the sand, silt and clay fractions as influenced by the nature and complementary exchangeable cations. Soil Sci Soc Am J 15:125–128

    Article  CAS  Google Scholar 

  26. Jackson ML (1973) Soil chemical analysis. Prentice Hall, New Delhi

    Google Scholar 

  27. Holt JG, Krieg NR, Sneath PHA, Staley JT, Williams ST (1994) Bergey’s manual of determinative bacteriology, 9th edn. Williams & Wilkins, Baltimore

    Google Scholar 

  28. Mehta P, Walia A, Chauhan A, Shirkot CK (2013) Plant growth promoting traits of phosphate-solubilizing rhizobacteria isolated from apple trees in trans Himalayan region of Himachal Pradesh. Arch Microbiol 195(5):357–369

    Article  CAS  PubMed  Google Scholar 

  29. Altschul SF, Thomas LM, Alejandro AS, Jinghui Z (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acid Res 25:3389–3402

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  30. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res 22:4673–4680

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Koo SY, Hong SH, Ryu HW, Cho KS (2010) Plant growth promoting trait of rhizobacteria isolated from soil contaminated with petroleum and heavy metals. J Microbiol Biotechnol 20:587–593

    CAS  PubMed  Google Scholar 

  32. Kumar A, Guleria S, Mehta P, Walia A, Chauhan A, Shirkot CK (2015) Plant growth-promoting traits of phosphate solubilizing bacteria isolated from Hippophae rhamnoides L. (Sea-buckthorn) growing in cold desert Trans-Himalayan Lahul and Spiti regions of India. Acta Physiol Plant 37(3):37–48

    Article  Google Scholar 

  33. Yeon KS, Hong SH, Ryu HW, Cho KS (2010) Plant growth promoting trait of rhizobacteria isolated from soil contaminated with petroleum and heavy metals. J Microbiol Biotechnol 20(3):587–593

    Google Scholar 

  34. Mehta P, Walia A, Chauhan A, Shirkot CK (2013) Plant growth promoting traits of phosphate-solubilizing rhizobacteria isolated from apple trees in trans Himalayan region of Himachal Pradesh. Arch Microbiol 195:357–369

    Article  CAS  PubMed  Google Scholar 

  35. Selvakumar G, Kundu S, Gupta AD, Shouche YS, Gupta HS (2008) Isolation and characterization of nonrhizobial plant growth promoting bacteria from nodules of Kudzu (Pueraria thunbergiana) and their effect on wheat seedling growth. Curr Microbiol 56:134–139

    Article  CAS  PubMed  Google Scholar 

  36. Srivastava N, Bhandari B, Bhatt AB (2014) PGPR isolated from rhizospheric soil of Zanthoxylum armatum DC in Garhwal Himalaya. Int J Herb Med 2(1):100–108

    Google Scholar 

  37. Rodriguez H, Fraga R, Gonzalez T, Bashan Y (2006) Genetics of phosphate solubilisation and its potential applications for improving plant-growth promoting bacteria. Plant Soil 287:15–21

    Article  CAS  Google Scholar 

  38. Rroco ER, Kosegarten H, Harizaj F, Imani J, Mengel K (2003) The importance of soil microbial activity for the supply of iron to sorghum and rape. Eur J Agronom 19:487–493

    Article  CAS  Google Scholar 

  39. Sharma A, Johri BN, Sharma AK, Glick BR (2003) Plant growth promoting bacterium Pseudomonas sp. Strain GRP3 influences iron acquisition in mung bean. Soil Biol Biochem 35:887–894

    Article  CAS  Google Scholar 

  40. Blumer C, Haas D (2000) Mechanism, regulation, and ecological role of bacterial cyanide biosynthesis. Arch Microbiol 173:170–177

    Article  CAS  PubMed  Google Scholar 

  41. Ahl P, Viosard C, Defago G (1986) Iron bound siderophores, cyanic acid and antibiotics involved in suppression of Thielaviopsis basicola by Pseudomonas fluorescence strain. J Phytopathol 116:121–134

    Article  CAS  Google Scholar 

  42. Kloepper JW, Leong J, Teintze M, Schroth MN (1980) Enhanced plant growth by siderophores produced by plant growth promoting rhizobacteria. Nature 286:885–886

    Article  CAS  Google Scholar 

  43. Cazorla FM, Romero D, Pérez Garciá A, Lugtenberg BJJ, Vincente AD, Bloemberg G (2007) Isolation and characterization of antagonistic Bacillus subtilis strains from the avocado rhizoplane displaying biocontrol activity. J Appl Microbiol 103:1950–1959

    Article  CAS  PubMed  Google Scholar 

  44. Kumar D, Shivay YS, Dhar S, Kumar C, Prasad R (2013) Rhizospheric flora and the influence of agronomic practices on them-a review. Proc Natl Acad Sci India B Biol Sci 83(1):1–14

    Article  Google Scholar 

  45. Dubeikovsky AN, Mordeekhora EA, Kochetkov VV, Polikarpova FY, Boronin AM (1993) Growth promotion of blackcurrant softwood cuttings by recombinant strain Pseudomonas fluorescens BSP53a synthesizing an increased amount of indole-3-acetic acid. Soil Biol Biochem 25:1277–1281

    Article  Google Scholar 

  46. Alstrom S, Burns RG (1989) Cyanide production by rhizobacteria as a possible mechanism of plant growth inhibition. Biol Fertil Soil 7:232–238

    Article  Google Scholar 

  47. Sharma R, Walia A, Chauhan A, Shirkot CK (2015) Multi-trait plant growth promoting bacteria from tomato and evaluation of their potential as bioinoculants. Adv Biol Res. doi:10.5958/0974-4517.2015.00019.1

    Google Scholar 

  48. Kaushal M, Kaushal R (2013) Plant growth promoting rhizobacteria- impacts on cauliflower yield and soil health. Bioscan 8(2):549–552

    Google Scholar 

  49. Han HS, Supanjani Lee KD (2006) Effect of co-inoculation with phosphate and potassium solubilizing bacteria on mineral uptake and growth of pepper and cucumber. Plant Soil Environ 52(3):130–136

    CAS  Google Scholar 

  50. Supanjani Han HS, Jung JS, Lee KD (2006) Rock phosphate-potassium and rock-solubilising bacteria as alternative, sustainable fertilisers. Agron Sustain Develop 26(4):233–240

    Article  CAS  Google Scholar 

  51. Kumar P, Dubey RC, Maheshwari DK (2012) Bacillus strains isolated from rhizosphere showed plant growth promoting and antagonistic activity against phytopathogens. Microbiol Res 167:493–499

    Article  CAS  PubMed  Google Scholar 

  52. Rinu K, Pandey A (2009) Bacillus subtilis NRRL B-30408 inoculation enhances the symbiotic efficiency of Lens esculenta Moench at a Himalayan location. J Plant Nutri Soil Sci 172(1):134–139

    Article  CAS  Google Scholar 

  53. Jongsik C, Kyung SB (2000) Phylogenetic analysis of Bacillus subtilis and related taxa based on partial gyrA gene sequences. Anton van Leeuwen 78:123–127

    Article  Google Scholar 

  54. Kaki AA, Chaouche NA, Dehimat L, Milet A, Youcef-Ali M, Ongena V, Thonart P (2013) Biocontrol and plant growth promotion characterization of Bacillus species isolated from Calendula officinalis rhizosphere. Ind J Microbiol 53(4):447–452

    Article  Google Scholar 

  55. Köberll M, Zachowl C, Müllerl H, Ramadan EM, Bauer R, Berg G (2012) Biological control agents for combating soil-bornes pathogens in Egypt. IOP Publishing EbookBrowse. http://ebookbrowse.com/bi/biological-control-agents.html Accessed 15 July 2012

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Acknowledgments

The authors would like to thank ICAR (AINP on Soil Biodiversity and Biofertilizer), New Delhi, India, for providing the financial support. The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Correspondence to C. K. Shirkot.

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Sharma, R., Sharma, P., Chauhan, A. et al. Plant growth promoting activities of rhizobacteria isolated from Podophyllum hexandrum growing in North-West regions of the Himalaya. Proc. Natl. Acad. Sci., India, Sect. B Biol. Sci. 87, 1443–1457 (2017). https://doi.org/10.1007/s40011-016-0722-2

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