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Changpingibacter yushuensis gen. nov., sp. nov., isolated from fluvial sediment in Qinghai Tibet Plateau of China

  • Microbial Systematics and Evolutionary Microbiology
  • Published:
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Abstract

Two facultatively anaerobic, short rod-shaped, non-motile, Gram-stain-positive, unknown bacterial strains (JY-X040T and JY-X174) were isolated from fluvial sediments of Tongtian River in Yushu Tibetan Autonomous Prefecture, Qinghai province, China. Cells formed translucent, gray, round and convex colonies, with a diameter of less than 0.5 mm after 5 days of incubation at 30°C on brain heart infusion-5% sheep blood agar. The 16S rRNA gene sequence similarity between strain JY-X040T and Fudania jinshanensis 313T is 93.87%. In the four phylogenetic trees constructed based on the 16S rRNA gene and 423 core genes, the two isolates form an independent branch, phylogenetically closest to F. jinshanensis 313T, but could not be classified as a member of the genus Fudania or any other genus of the family Arcanobacteriaceae. The DNA G + C content of strain JY-X040T was 57.8%. Calculation results of average nucleotide identity, digital DNA-DNA hybridization value and amino acid identity between strain JY-X040T and F. jinshanensis 313T are 69.9%, 22.9%, and 64.1%. The major cellular fatty acids were C16:0 (23%) and C18:1ω9c (22%). The cell-wall peptidoglycan type was A5α (l-Lys-l-Ala-l-Lys-d-Glu). The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside and four unidentified components. The whole-cell sugars contained rhamnose and ribose. MK-10(H4) was the sole respiratory quinone. The minimum inhibitory concentration of streptomycin was 32 μg/ml. All physiological, biochemical, chemotaxonomic and genomic characteristics support that strains JY-X040T and JY-X174 represent members of a novel species in a new genus, Changpingibacter yushuensis gen. nov., sp. nov. The type strain is JY-X040T (GDMCC 1.1996T = KCTC 49514T).

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Acknowledgements

This work was supported by grants from National Key R&D Program of China (2019YFC1200501 and 2019YFC1200505) and Research Units of Discovery of Unknown Bacteria and Function (2018RU010).

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Authors and Affiliations

  1. Department of Epidemiology, Shanxi Medical University School of Public Health, Taiyuan, Shanxi, 030001, P. R. China

    Yifan Jiao, Kui Dong, Yanpeng Cheng, Suping Wang & Jianguo Xu

  2. National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, State Key Laboratory of Infectious Disease Prevention and Control, Beijing, 102206, P. R. China

    Yifan Jiao, Sihui Zhang, Jing Yang, Kui Dong, Yanpeng Cheng, Mingchao Xu, Wentao Zhu, Shan Lu, Dong Jin, Ji Pu, Ying Huang, Liyun Liu & Jianguo Xu

  3. Shanghai Institute for Emerging and Re-emerging Infectious Diseases, Shanghai Public Health Clinical Center, Shanghai, 201508, P. R. China

    Jing Yang, Shan Lu, Dong Jin & Jianguo Xu

  4. Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing, 100730, P. R. China

    Jing Yang, Shan Lu, Dong Jin & Jianguo Xu

  5. Henan Key Laboratory of Biomolecular Recognition and Sensing, College of Chemistry and Chemical Engineering, Henan Joint International Research Laboratory of Chemo/Biosensing and Early Diagnosis of Major Diseases, Shangqiu Normal University, Shangqiu, 476000, P. R. China

    Xin-He Lai

  6. Institute of Public Health, Nankai University, Tianjin, 300350, P. R. China

    Jianguo Xu

  7. Department of Laboratorial Science and Technology & Vaccine Research Center, School of Public Health, Peking University, Beijing, 100191, P. R. China

    Sihui Zhang & Jianguo Xu

  8. Department of Epidemiology, Center for Global Health, School of Public Health, Nanjing Medical University, Nanjing, 211166, P. R. China

    Mingchao Xu & Jianguo Xu

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  1. Yifan Jiao
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Jiao, Y., Zhang, S., Yang, J. et al. Changpingibacter yushuensis gen. nov., sp. nov., isolated from fluvial sediment in Qinghai Tibet Plateau of China. J Microbiol. 60, 147–155 (2022). https://doi.org/10.1007/s12275-022-1199-8

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