Skip to main content
SpringerLink
Log in

Jindonia aestuariivivens gen. nov., sp. nov., isolated from a tidal flat on the south-western sea in Republic of Korea

  • Microbial Systematics and Evolutionary Microbiology
  • Published:
Journal of Microbiology Aims and scope Submit manuscript

Abstract

A Gram-stain-negative, aerobic, non-flagellated, and coccoid, ovoid or rod-shaped bacterium, designated JDTF-65T, was isolated from a tidal flat on the south-western sea in Republic of Korea. Strain JDTF-65T grew optimally at 25°C, at pH 7.0–8.0 and in the presence of 2.0% (w/v) NaCl. Strain JDTF-65T exhibited 16S rRNA gene sequence similarities of 97.1–97.6% to the type strains of ‘Aliisedimentitalea scapharcae’, Phaeobacter gallaeciensis, Phaeobacter inhibens, Leisingera aquimarina, Tropicibacter litoreus, Sulfitobacter pseudonitzschiae, and Pseudoseohaeicola caenipelagi. Phylogenetic trees based on 16S rRNA gene sequences showed that strain JDTF-65T forms an independent lineage within the radiation enclosed by the family Rhodobacteraceae. Strain JDTF-65T contained Q-10 as the predominant ubiquinone and C18:1 ω7c as the major fatty acid. The major polar lipids of strain JDTF-65T were phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, one unidentified aminolipid, and one unidentified lipid. The DNA G+C content of strain JDTF-65T was 56.8 mol% and its DNA-DNA relatedness values with the type strains of the phylogenetically related species were 13–27%. Differential phenotypic properties revealed that strain JDTF-65T is separated from representatives of some phylogenetically related taxa. On the basis of the data presented, strain JDTF-65T represents a new genus and species within the family Rhodobacteraceae, for which the name Jindonia aestuariivivens gen. nov., sp. nov. is proposed. The type strain of Jindonia aestuariivivens is JDTF-65T (=KCTC 52564T =NBRC 112534T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Barrow, G.I. and Feltham, R.K.A. 1993. Cowan and Steel’s Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge University Press, Cambridge, UK.

    Book  Google Scholar 

  • Baumann, P. and Baumann, L. 1981. The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes, pp. 1302–1331. In Starr, M.P., Stolp, H., Trüper, H.G., Balows, A., and Schlegel, H.G. (eds.), The Prokaryotes. Springer-Verlag, Berlin, Germany.

    Google Scholar 

  • Brinkhoff, T., Giebel, H.A., and Simon, M. 2008. Diversity, ecology, and genomics of the Roseobacter clade: a short overview. Arch. Microbiol. 189, 531–539.

    Article  CAS  PubMed  Google Scholar 

  • Bruns, A., Rohde, M., and Berthe-Corti, L. 2001. Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int. J. Syst. Evol. Microbiol. 51, 1997–2006.

    Article  CAS  PubMed  Google Scholar 

  • Buchan, A., González, J.M., and Moran, M.A. 2005. Overview of the marine Roseobacter lineage. Appl. Environ. Microbiol. 71, 5665–5677.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cohen-Bazire, G., Sistrom, W.R., and Stanier, R.Y. 1957. Kinetic studies of pigment synthesis by nonsulfur purple bacteria. J. Cell Comp. Physiol. 49, 25–68.

    Article  CAS  PubMed  Google Scholar 

  • Embley, T.M. and Wait, R. 1994. Structural lipids of eubacteria, pp. 121–161. In Goodfellow, M. and O’Donnell, A.G. (eds.), Modern Microbial Methods. Chemical Methods in Prokaryotic Systematics. John Wiley & Sons, Chichester, England.

    Google Scholar 

  • Ezaki, T., Hashimoto, Y., and Yabuuchi, E. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224–229.

    Article  Google Scholar 

  • Hong, Z., Lai, Q., Luo, Q., Jiang, S., Zhu, R., Liang, J., and Gao, Y. 2015. Sulfitobacter pseudonitzschiae sp. nov., isolated from the toxic marine diatom Pseudo-nitzschia multiseries. Int. J. Syst. Evol. Microbiol. 65, 95–100.

    Article  CAS  PubMed  Google Scholar 

  • Jung, Y.T., Kim, B.H., Oh, T.K., and Yoon, J.H. 2010. Pseudoruegeria lutimaris sp. nov., isolated from a tidal flat sediment, and emended description of the genus Pseudoruegeria. Int. J. Syst. Evol. Microbiol. 60, 1177–1181.

    Article  CAS  PubMed  Google Scholar 

  • Kim, Y.O., Park, S., Nam, B.H., Kim, D.G., Won, S.M., Park, J.M., and Yoon, J.H. 2015. Aliisedimentitalea scapharcae gen. nov., sp. nov., isolated from ark shell Scapharva broughtonii. J. Microbiol. 53, 495–502.

    Article  PubMed  Google Scholar 

  • Komagata, K. and Suzuki, K.I. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19, 161–207.

    Article  CAS  Google Scholar 

  • Lányí, B. 1987. Classical and rapid identification methods for medically important bacteria. Methods Microbiol. 19, 1–67.

    Article  Google Scholar 

  • Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B.J., and Brinkhoff, T. 2006. Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int. J. Syst. Evol. Microbiol. 56, 1293–1304.

    Article  CAS  PubMed  Google Scholar 

  • Minnikin, D.E., O’Donnell, A.G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J.H. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2, 233–241.

    Article  CAS  Google Scholar 

  • Park, S., Jung, Y.T., Won, S.M., Park, J.M., and Yoon, J.H. 2015a. Sulfitobacter undariae sp. nov., isolated from a brown algae reservoir. Int. J. Syst. Evol. Microbiol. 65, 1672–1678.

    Article  CAS  PubMed  Google Scholar 

  • Park, S., Park, J.M., Kang, C.H., Kim, S.G., and Yoon, J.H. 2015b. Pseudoseohaeicola caenipelagi gen. nov., sp. nov., isolated from a tidal flat. Int. J. Syst. Evol. Microbiol. 65, 1819–1824.

    Article  CAS  PubMed  Google Scholar 

  • Park, S., Won, S.M., Kim, H., Park, D.S., and Yoon, J.H. 2014. Aestuariivita boseongensis gen. nov., sp. nov., isolated from a tidal flat sediment. Int. J. Syst. Evol. Microbiol. 64, 2969–2974.

    Article  CAS  PubMed  Google Scholar 

  • Rappé, M.S., Vergin, K., and Giovannoni, S.J. 2000. Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol. Ecol. 33, 219–232.

    Article  PubMed  Google Scholar 

  • Ruiz-Ponte, C., Cilia, V., Lambert, C., and Nicolas, J.L. 1998. Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. Int. J. Syst. Bacteriol. 48, 537–542.

    Article  CAS  PubMed  Google Scholar 

  • Sasser, M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI. Inc., Newark, DE, USA.

    Google Scholar 

  • Staley, J.T. 1968. Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. J. Bacteriol. 95, 1921–1942.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Tamaoka, J. and Komagata, K. 1984. Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol. Lett. 25, 125–128.

    Article  CAS  Google Scholar 

  • Vandecandelaere, I., Segaert, E., Mollica, A., Faimali, M., and Vandamme, P. 2008. Leisingera aquimarina sp. nov., isolated from a marine electroactive biofilm, and emended descriptions of Leisingera methylohalidivorans Schaefer et al. 2002, Phaeobacter daeponensis Yoon et al. 2007 and Phaeobacter inhibens Martens et al. 2006. Int. J. Syst. Evol. Microbiol. 58, 2788–2793.

    Article  CAS  PubMed  Google Scholar 

  • Wayne, L.G., Brenner, D.J., Colwell, R.R., Grimont, P.A.D., Kandler, O., Krichevsky, M.I., Moore, L.H., Moore, W.E.C., Murray, R.G.E., Stackebrandt, E., et al. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463–464.

    Article  Google Scholar 

  • Yoon, J.H., Kang, S.J., Jung, Y.T., and Oh, T.K. 2010. Gaetbulicola byunsanensis gen. nov., sp. nov., isolated from tidal flat sediment. Int. J. Syst. Evol. Microbiol. 60, 196–199.

    Article  CAS  PubMed  Google Scholar 

  • Yoon, J.H., Kang, K.H., and Park, Y.H. 2003. Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int. J. Syst. Evol. Microbiol. 53, 449–454.

    Article  CAS  PubMed  Google Scholar 

  • Yoon, J.H., Kim, H., Kim, S.B., Kim, H.J., Kim, W.Y., Lee, S.T., Goodfellow, M., and Park, Y.H. 1996. Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int. J. Syst. Bacteriol. 46, 502–505.

    Article  CAS  Google Scholar 

  • Yoon, J.H., Lee, S.Y., Jung, Y.T., Lee, J.S., and Lee, K.C. 2013 Litorisediminicola beolgyonensis gen. nov., sp. nov., isolated from a coastal sediment. Int. J. Syst. Evol. Microbiol. 63, 2025–2031.

    Article  CAS  PubMed  Google Scholar 

  • Yoon, J.H., Lee, S.T., Kim, S.B., Kim, W.Y., Goodfellow, M., and Park, Y.H. 1997. Restriction fragment length polymorphism analysis of PCR-amplified 16S ribosomal DNA for rapid identification of Saccharomonospora strains. Int. J. Syst. Bacteriol. 47, 111–114.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon, 03063, Republic of Korea

    Sooyeon Park, Sun Young Yoon, Min-Ji Ha & Jung-Hoon Yoon

Authors
  1. Sooyeon Park
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Sun Young Yoon
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Min-Ji Ha
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Jung-Hoon Yoon
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Jung-Hoon Yoon.

Additional information

Supplemental material for this article may be found at http://www.springerlink.com/content/120956.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Park, S., Yoon, S.Y., Ha, MJ. et al. Jindonia aestuariivivens gen. nov., sp. nov., isolated from a tidal flat on the south-western sea in Republic of Korea. J Microbiol. 55, 421–427 (2017). https://doi.org/10.1007/s12275-017-6621-2

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12275-017-6621-2

Keywords

Search

Navigation